Wall clock time and date at job start Tue Mar 31 2020 13:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00174 * 2 1 4 4 H 1.48495 * 109.47039 * 269.99479 * 3 2 1 5 5 H 1.48502 * 109.47109 * 29.99382 * 3 2 1 6 6 H 1.48500 * 109.47296 * 149.99367 * 3 2 1 7 7 C 1.37877 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00023 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47050 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47141 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46802 * 55.00088 * 11 10 9 13 13 N 1.46896 * 109.47123 * 295.00277 * 11 10 9 14 14 C 1.50693 * 109.47056 * 174.99778 * 11 10 9 15 15 O 1.21289 * 119.99931 * 100.00371 * 14 11 10 16 16 N 1.34776 * 120.00361 * 279.99979 * 14 11 10 17 17 C 1.46370 * 119.77129 * 359.97438 * 16 14 11 18 18 C 1.52178 * 111.20096 * 243.73512 * 17 16 14 19 19 O 1.43248 * 110.13798 * 298.82036 * 18 17 16 20 20 C 1.35568 * 115.81303 * 89.24692 * 19 18 17 21 21 C 1.38858 * 120.21532 * 108.28350 * 20 19 18 22 22 C 1.38117 * 119.90566 * 183.70440 * 21 20 19 23 23 C 1.38483 * 120.33054 * 359.16459 * 22 21 20 24 24 F 1.35095 * 120.05743 * 179.37371 * 23 22 21 25 25 C 1.38636 * 119.89135 * 359.34569 * 23 22 21 26 26 C 1.37660 * 119.67064 * 0.71274 * 25 23 22 27 27 C 1.46641 * 119.77078 * 180.02562 * 16 14 11 28 28 H 0.97000 * 119.99860 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47031 * 60.00140 * 9 7 2 30 30 H 1.08994 * 109.46869 * 299.99875 * 9 7 2 31 31 H 1.09002 * 109.47109 * 60.00164 * 10 9 7 32 32 H 1.09002 * 109.47299 * 300.00311 * 10 9 7 33 33 H 1.00902 * 110.99818 * 299.99787 * 13 11 10 34 34 H 1.00904 * 111.00406 * 63.95148 * 13 11 10 35 35 H 1.09000 * 109.13369 * 4.18186 * 17 16 14 36 36 H 1.09003 * 109.13544 * 123.29298 * 17 16 14 37 37 H 1.08999 * 109.35939 * 59.03055 * 18 17 16 38 38 H 1.08999 * 109.36208 * 178.61979 * 18 17 16 39 39 H 1.08002 * 120.04573 * 3.46366 * 21 20 19 40 40 H 1.08002 * 119.83853 * 179.44884 * 22 21 20 41 41 H 1.07996 * 120.16587 * 180.68351 * 25 23 22 42 42 H 1.08993 * 109.58629 * 339.78611 * 27 16 14 43 43 H 1.09002 * 109.69172 * 219.43843 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 1 5.9148 -2.0472 0.8429 13 7 6.0411 -2.0512 -1.2542 14 6 6.0538 -4.0520 0.1247 15 8 6.4279 -4.6511 -0.8613 16 7 6.0873 -4.6521 1.3310 17 6 5.6353 -3.9243 2.5177 18 6 6.7758 -3.7165 3.5035 19 8 7.2815 -4.9815 3.9464 20 6 8.2775 -5.5143 3.1968 21 6 9.5766 -5.5521 3.6860 22 6 10.5994 -6.0257 2.8878 23 6 10.3338 -6.4799 1.6069 24 9 11.3403 -6.9303 0.8264 25 6 9.0332 -6.4722 1.1269 26 6 8.0156 -5.9985 1.9237 27 6 6.5776 -6.0294 1.4456 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8751 -0.6805 -0.8888 31 1 3.6585 -3.1502 -0.8893 32 1 3.6578 -3.1507 0.8907 33 1 5.7176 -2.5800 -2.0503 34 1 5.7717 -1.0818 -1.3304 35 1 5.2443 -2.9533 2.2139 36 1 4.8416 -4.4916 3.0040 37 1 7.5757 -3.1575 3.0180 38 1 6.4128 -3.1519 4.3623 39 1 9.7874 -5.2079 4.6878 40 1 11.6108 -6.0463 3.2662 41 1 8.8195 -6.8357 0.1326 42 1 6.5270 -6.5175 0.4724 43 1 5.9664 -6.5784 2.1619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424165336.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:12 Heat of formation + Delta-G solvation = -109.056867 kcal Electronic energy + Delta-G solvation = -27566.441620 eV Core-core repulsion = 23525.450572 eV Total energy + Delta-G solvation = -4040.991048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.96528 -42.00674 -40.59992 -38.41482 -37.27383 -36.68685 -34.83584 -33.28144 -32.09484 -31.63505 -29.63246 -29.00451 -27.39933 -25.36809 -24.51496 -23.41882 -22.60305 -21.97502 -20.37380 -19.32587 -18.95763 -18.54539 -18.31526 -17.80516 -17.27033 -16.71686 -16.45477 -16.37553 -16.21115 -15.76924 -15.68685 -15.38516 -15.34248 -14.95120 -14.71742 -14.61955 -14.34185 -14.24900 -14.17341 -13.67040 -13.51578 -13.09849 -12.83633 -12.81790 -12.61614 -12.53074 -12.24034 -12.02013 -11.90886 -11.66654 -11.40014 -11.26715 -10.80345 -10.75070 -10.17059 -9.90235 -9.68182 -9.47843 -8.28442 -6.34131 -0.14911 0.05456 1.40455 1.41054 1.48688 1.52501 1.77241 2.22661 2.37410 2.82790 3.07466 3.11802 3.36452 3.52094 3.66377 3.68086 3.90865 3.97102 4.03097 4.05798 4.13160 4.13200 4.19717 4.35498 4.45740 4.55062 4.58073 4.69061 4.73764 4.78520 4.84267 4.93724 5.02650 5.05845 5.24991 5.35056 5.36608 5.46406 5.57332 5.63383 5.98854 6.23178 6.26569 6.36425 6.45940 6.74724 7.04419 7.30883 8.88332 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.003017 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.913132 B = 9278.626069 C = 9715.606087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.232 1.232 7 C -0.533 4.533 8 H 0.026 0.974 9 C -0.005 4.005 10 C -0.120 4.120 11 C 0.080 3.920 12 H 0.121 0.879 13 N -0.832 5.832 14 C 0.524 3.476 15 O -0.564 6.564 16 N -0.606 5.606 17 C 0.061 3.939 18 C 0.050 3.950 19 O -0.326 6.326 20 C 0.091 3.909 21 C -0.101 4.101 22 C -0.128 4.128 23 C 0.073 3.927 24 F -0.145 7.145 25 C -0.129 4.129 26 C -0.117 4.117 27 C 0.154 3.846 28 H 0.266 0.734 29 H 0.036 0.964 30 H 0.022 0.978 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.345 0.655 34 H 0.356 0.644 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.146 0.854 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.135 0.865 42 H 0.087 0.913 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.381 -9.171 10.967 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.155 1.155 7 C -0.571 4.571 8 H 0.045 0.955 9 C -0.042 4.042 10 C -0.159 4.159 11 C -0.034 4.034 12 H 0.138 0.862 13 N -0.364 5.364 14 C 0.313 3.687 15 O -0.442 6.442 16 N -0.338 5.338 17 C -0.061 4.061 18 C -0.024 4.024 19 O -0.242 6.242 20 C 0.047 3.953 21 C -0.120 4.120 22 C -0.147 4.147 23 C 0.054 3.946 24 F -0.124 7.124 25 C -0.149 4.149 26 C -0.119 4.119 27 C 0.032 3.968 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.172 0.828 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.164 0.836 39 H 0.185 0.815 40 H 0.184 0.816 41 H 0.153 0.847 42 H 0.105 0.895 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 22.098 -9.629 10.862 26.439 hybrid contribution -1.338 0.555 -1.033 1.779 sum 20.760 -9.074 9.829 24.697 Atomic orbital electron populations 1.70081 1.08600 1.28212 1.52513 1.26070 0.95572 1.03752 0.94013 0.85632 0.79933 0.77801 0.79105 1.19651 1.21533 1.15517 1.21420 0.92165 0.92857 1.50645 0.95529 1.19498 0.93793 0.93565 0.97366 1.22068 0.93049 0.98988 1.01842 1.21485 0.93631 0.92059 0.96275 0.86170 1.58759 1.66560 1.07739 1.03298 1.20958 0.76399 0.88782 0.82573 1.90625 1.49041 1.66538 1.38013 1.47889 1.64120 1.14378 1.07457 1.22469 0.98300 0.99641 0.85679 1.23392 0.95858 0.83241 0.99954 1.86138 1.50763 1.36619 1.50707 1.18746 0.88736 0.97972 0.89893 1.21390 0.89409 0.99367 1.01796 1.21305 1.02063 0.99622 0.91682 1.17905 0.84495 1.01483 0.90729 1.91486 1.59330 1.87031 1.74555 1.20912 0.91055 1.01988 1.00908 1.20591 0.96379 1.00475 0.94422 1.20558 0.89920 0.83278 1.03037 0.92565 0.94538 0.96007 0.94095 0.91246 0.84177 0.82849 0.86999 0.88561 0.91776 0.83631 0.81507 0.81583 0.84741 0.89506 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.15 13.96 21.45 0.30 -57.85 16 2 C 0.00 0.15 5.47 84.66 0.46 0.61 16 3 Si 0.95 41.08 27.47 68.60 1.88 42.96 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.23 -8.73 6.54 99.48 0.65 -8.08 16 7 C -0.53 -28.82 9.66 25.60 0.25 -28.57 16 8 H 0.03 1.62 7.99 -2.91 -0.02 1.60 16 9 C 0.00 -0.19 3.81 29.85 0.11 -0.08 16 10 C -0.12 -4.14 4.44 30.59 0.14 -4.01 16 11 C 0.08 2.32 2.34 44.17 0.10 2.42 16 12 H 0.12 2.91 6.69 -2.38 -0.02 2.89 16 13 N -0.83 -24.58 8.94 -171.81 -1.54 -26.12 16 14 C 0.52 15.89 6.92 87.65 0.61 16.50 16 15 O -0.56 -20.85 15.68 -3.06 -0.05 -20.90 16 16 N -0.61 -14.59 2.69 -826.09 -2.22 -16.81 16 17 C 0.06 1.12 5.53 86.13 0.48 1.59 16 18 C 0.05 0.73 6.68 71.71 0.48 1.21 16 19 O -0.33 -5.79 9.90 -88.76 -0.88 -6.67 16 20 C 0.09 1.73 5.61 22.53 0.13 1.86 16 21 C -0.10 -1.51 10.00 22.39 0.22 -1.29 16 22 C -0.13 -1.96 10.00 22.30 0.22 -1.74 16 23 C 0.07 1.50 7.31 22.42 0.16 1.66 16 24 F -0.15 -3.24 17.27 44.97 0.78 -2.46 16 25 C -0.13 -2.90 9.69 22.23 0.22 -2.69 16 26 C -0.12 -2.54 5.49 -19.61 -0.11 -2.65 16 27 C 0.15 3.50 5.66 85.88 0.49 3.99 16 28 H 0.27 15.14 8.31 -92.71 -0.77 14.36 16 29 H 0.04 1.38 7.20 -2.39 -0.02 1.36 16 30 H 0.02 0.85 6.29 -2.39 -0.02 0.84 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 2.32 6.98 -2.39 -0.02 2.30 16 33 H 0.35 10.82 8.58 -89.69 -0.77 10.05 16 34 H 0.36 9.75 7.55 -89.69 -0.68 9.07 16 35 H 0.11 2.03 4.67 -2.39 -0.01 2.02 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 0.97 7.88 -2.39 -0.02 0.95 16 38 H 0.15 1.24 8.14 -2.39 -0.02 1.23 16 39 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.13 3.11 8.00 -2.91 -0.02 3.09 16 42 H 0.09 2.21 6.96 -2.39 -0.02 2.20 16 43 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -71.15 351.05 1.79 -69.35 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.44 Total: 29.68 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 3.96 Total: -11.19 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -3.46 Total: -100.77 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.93 Total: -27.57 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.88 Total: 42.96 kcal Total: -71.15 1.79 -69.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424165336.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.702 kcal (2) G-P(sol) polarization free energy of solvation -71.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds