Wall clock time and date at job start Tue Mar 31 2020 13:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00233 * 2 1 4 4 H 1.48497 * 109.47103 * 270.00099 * 3 2 1 5 5 H 1.48505 * 109.47116 * 29.99737 * 3 2 1 6 6 H 1.48496 * 109.47467 * 149.99799 * 3 2 1 7 7 C 1.37871 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00036 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46889 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46788 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47242 * 55.00016 * 11 10 9 13 13 N 1.46900 * 109.47324 * 295.00291 * 11 10 9 14 14 C 1.50694 * 109.47070 * 175.00301 * 11 10 9 15 15 O 1.21283 * 120.00363 * 99.99964 * 14 11 10 16 16 N 1.34784 * 119.99988 * 280.00082 * 14 11 10 17 17 C 1.46493 * 119.99864 * 179.72721 * 16 14 11 18 18 H 1.09005 * 109.43980 * 35.08654 * 17 16 14 19 19 C 1.53070 * 109.43755 * 155.00139 * 17 16 14 20 20 C 1.53402 * 108.30058 * 168.24723 * 19 17 16 21 21 O 1.42830 * 108.36039 * 295.26920 * 20 19 17 22 22 C 1.35905 * 117.85274 * 49.14499 * 21 20 19 23 23 C 1.39340 * 118.49182 * 162.95022 * 22 21 20 24 24 F 1.35097 * 119.91085 * 359.84094 * 23 22 21 25 25 C 1.38132 * 120.17899 * 179.80823 * 23 22 21 26 26 C 1.38311 * 119.92654 * 359.97438 * 25 23 22 27 27 C 1.38077 * 119.99808 * 0.08055 * 26 25 23 28 28 C 1.38281 * 121.81858 * 342.90770 * 22 21 20 29 29 H 0.97004 * 119.99849 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46890 * 60.00372 * 9 7 2 31 31 H 1.08994 * 109.46941 * 299.99565 * 9 7 2 32 32 H 1.08996 * 109.46833 * 60.00605 * 10 9 7 33 33 H 1.08994 * 109.47192 * 299.99679 * 10 9 7 34 34 H 1.00898 * 111.00354 * 176.04606 * 13 11 10 35 35 H 1.00900 * 110.99611 * 300.00476 * 13 11 10 36 36 H 0.97000 * 119.99339 * 0.02562 * 16 14 11 37 37 H 1.09005 * 109.69369 * 287.95110 * 19 17 16 38 38 H 1.09002 * 109.69574 * 48.54087 * 19 17 16 39 39 H 1.08996 * 109.68729 * 54.98950 * 20 19 17 40 40 H 1.08999 * 109.68889 * 175.51456 * 20 19 17 41 41 H 1.08002 * 120.04019 * 179.97438 * 25 23 22 42 42 H 1.07993 * 119.99883 * 180.02562 * 26 25 23 43 43 H 1.07994 * 119.81705 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 6 5.5514 -2.6367 0.0022 12 1 5.9148 -2.0465 0.8435 13 7 6.0411 -2.0523 -1.2534 14 6 6.0537 -4.0519 0.1271 15 8 6.4278 -4.6519 -0.8583 16 7 6.0873 -4.6511 1.3340 17 6 6.5700 -6.0290 1.4545 18 1 7.3750 -6.1953 0.7386 19 6 7.0940 -6.2628 2.8736 20 6 7.3145 -7.7690 3.0635 21 8 6.0471 -8.4228 2.9835 22 6 5.2402 -8.1173 1.9336 23 6 4.1866 -8.9780 1.6324 24 9 3.9897 -10.0880 2.3769 25 6 3.3425 -8.6990 0.5752 26 6 3.5430 -7.5621 -0.1864 27 6 4.5870 -6.7082 0.1094 28 6 5.4389 -6.9836 1.1671 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8911 31 1 3.8752 -0.6805 -0.8888 32 1 3.6585 -3.1509 -0.8875 33 1 3.6578 -3.1498 0.8924 34 1 7.0476 -1.9818 -1.2512 35 1 5.7175 -2.5818 -2.0490 36 1 5.7877 -4.1713 2.1221 37 1 8.0372 -5.7334 3.0088 38 1 6.3635 -5.9040 3.5987 39 1 7.9720 -8.1455 2.2800 40 1 7.7629 -7.9543 4.0396 41 1 2.5268 -9.3680 0.3436 42 1 2.8835 -7.3426 -1.0129 43 1 4.7411 -5.8215 -0.4875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424169950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:47 Heat of formation + Delta-G solvation = -99.864182 kcal Electronic energy + Delta-G solvation = -27458.044505 eV Core-core repulsion = 23417.452081 eV Total energy + Delta-G solvation = -4040.592424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.89102 -41.26104 -39.74841 -37.71242 -36.05780 -35.28019 -32.81281 -32.20385 -30.95348 -30.55394 -30.01767 -27.16926 -25.57482 -24.26973 -23.44819 -22.40265 -20.75052 -20.57501 -19.98778 -18.22883 -17.80832 -17.14699 -17.06443 -16.72782 -16.42920 -15.90556 -15.69319 -15.54370 -15.12619 -14.83313 -14.63157 -14.37143 -14.13478 -13.82416 -13.56595 -13.36011 -13.15818 -12.71252 -12.63244 -12.41219 -12.34121 -11.85770 -11.72384 -11.53155 -11.22910 -11.10411 -11.04567 -10.91683 -10.47726 -10.05693 -9.76322 -9.65247 -9.39672 -9.14966 -8.94016 -8.56644 -8.45829 -8.39259 -6.01752 -3.99671 0.91239 1.06519 2.49816 2.80281 2.98634 3.35238 3.41988 3.45614 3.46569 3.95423 4.12054 4.31918 4.37291 4.48752 4.59544 4.65402 4.73535 4.86184 4.95610 5.03269 5.08633 5.16382 5.20651 5.29086 5.34487 5.43312 5.53071 5.58727 5.69974 5.94356 6.09123 6.16132 6.24038 6.34784 6.39869 6.46999 6.81623 7.05367 7.13819 7.32742 7.36746 7.52060 7.58326 7.83088 8.06432 8.55045 9.02785 9.61078 11.11698 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.003292 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.485689 B = 8504.579828 C = 9369.225070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.088 4.088 11 C 0.075 3.925 12 H 0.099 0.901 13 N -0.810 5.810 14 C 0.485 3.515 15 O -0.546 6.546 16 N -0.721 5.721 17 C 0.190 3.810 18 H 0.102 0.898 19 C -0.168 4.168 20 C 0.067 3.933 21 O -0.309 6.309 22 C 0.105 3.895 23 C 0.063 3.937 24 F -0.135 7.135 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.074 4.074 28 C -0.152 4.152 29 H 0.262 0.738 30 H 0.012 0.988 31 H 0.029 0.971 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.336 0.664 35 H 0.350 0.650 36 H 0.406 0.594 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.443 -15.759 5.332 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.126 4.126 11 C -0.041 4.041 12 H 0.117 0.883 13 N -0.338 5.338 14 C 0.272 3.728 15 O -0.424 6.424 16 N -0.373 5.373 17 C 0.085 3.915 18 H 0.120 0.880 19 C -0.206 4.206 20 C -0.009 4.009 21 O -0.223 6.223 22 C 0.058 3.942 23 C 0.043 3.957 24 F -0.113 7.113 25 C -0.136 4.136 26 C -0.140 4.140 27 C -0.093 4.093 28 C -0.155 4.155 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.242 0.758 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 16.112 -15.557 5.000 22.948 hybrid contribution 0.689 0.102 0.317 0.765 sum 16.801 -15.455 5.317 23.440 Atomic orbital electron populations 1.69924 1.06360 1.26838 1.51343 1.25011 0.94690 0.99208 0.94566 0.86738 0.80226 0.83463 0.78575 1.20283 1.21713 1.18935 1.21165 0.89691 0.94345 1.50795 0.91293 1.19478 0.96411 0.91060 0.97165 1.21486 0.87798 1.01736 1.01577 1.21897 0.99459 0.87521 0.95208 0.88286 1.59015 1.15423 1.56044 1.03345 1.22762 0.76464 0.91046 0.82558 1.90671 1.48191 1.66593 1.36941 1.46232 1.66674 1.13538 1.10813 1.19596 0.93697 0.80930 0.97320 0.87984 1.22533 1.03798 0.97708 0.96579 1.22978 0.83217 0.90754 1.03950 1.86055 1.28643 1.65177 1.42444 1.18604 0.92434 0.93596 0.89547 1.17096 0.98454 0.85427 0.94677 1.91483 1.94725 1.49693 1.75442 1.21050 0.99211 0.99041 0.94310 1.21009 0.98549 0.93991 1.00483 1.21383 0.92910 0.99809 0.95152 1.20067 1.01019 0.95748 0.98636 0.92818 0.96932 0.95225 0.92196 0.92109 0.85242 0.83547 0.75826 0.88691 0.89347 0.91309 0.86650 0.84038 0.84495 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 8 H 0.07 2.07 7.99 -52.48 -0.42 1.65 16 9 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 10 C -0.09 -1.58 4.78 -26.73 -0.13 -1.71 16 11 C 0.07 1.06 3.15 -68.87 -0.22 0.85 16 12 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 13 N -0.81 -11.57 8.44 -5.66 -0.05 -11.62 16 14 C 0.49 6.35 5.62 -10.98 -0.06 6.29 16 15 O -0.55 -8.38 14.17 5.56 0.08 -8.30 16 16 N -0.72 -7.59 4.86 -54.86 -0.27 -7.85 16 17 C 0.19 1.91 2.70 -69.01 -0.19 1.73 16 18 H 0.10 1.11 7.57 -51.93 -0.39 0.71 16 19 C -0.17 -1.18 5.67 -26.49 -0.15 -1.33 16 20 C 0.07 0.48 7.03 37.37 0.26 0.74 16 21 O -0.31 -3.53 10.09 -19.44 -0.20 -3.73 16 22 C 0.10 1.32 6.48 -39.16 -0.25 1.06 16 23 C 0.06 0.82 7.30 -39.21 -0.29 0.53 16 24 F -0.13 -1.83 17.05 2.25 0.04 -1.79 16 25 C -0.12 -1.36 10.02 -39.59 -0.40 -1.75 16 26 C -0.12 -1.48 10.04 -39.61 -0.40 -1.88 16 27 C -0.07 -0.99 9.07 -39.52 -0.36 -1.35 16 28 C -0.15 -1.86 5.56 -104.45 -0.58 -2.45 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 31 H 0.03 0.69 7.18 -51.93 -0.37 0.32 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.34 4.06 9.06 -39.29 -0.36 3.71 16 35 H 0.35 5.12 8.58 -39.29 -0.34 4.78 16 36 H 0.41 3.60 8.58 -40.82 -0.35 3.25 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.64 8.11 -51.93 -0.42 0.21 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.14 2.08 4.68 -52.49 -0.25 1.83 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -33.45 355.51 -8.04 -41.49 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.82 Total: 9.02 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.29 Total: -12.53 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.46 Total: -46.51 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.12 Total: -12.03 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.45 -8.04 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424169950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.372 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds