Wall clock time and date at job start Tue Mar 31 2020 13:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00233 * 2 1 4 4 H 1.48497 * 109.47103 * 270.00099 * 3 2 1 5 5 H 1.48505 * 109.47116 * 29.99737 * 3 2 1 6 6 H 1.48496 * 109.47467 * 149.99799 * 3 2 1 7 7 C 1.37871 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00036 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46889 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46788 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47242 * 55.00016 * 11 10 9 13 13 N 1.46900 * 109.47324 * 295.00291 * 11 10 9 14 14 C 1.50694 * 109.47070 * 175.00301 * 11 10 9 15 15 O 1.21283 * 120.00363 * 99.99964 * 14 11 10 16 16 N 1.34784 * 119.99988 * 280.00082 * 14 11 10 17 17 C 1.46493 * 119.99864 * 179.72721 * 16 14 11 18 18 H 1.09005 * 109.43980 * 35.08654 * 17 16 14 19 19 C 1.53070 * 109.43755 * 155.00139 * 17 16 14 20 20 C 1.53402 * 108.30058 * 168.24723 * 19 17 16 21 21 O 1.42830 * 108.36039 * 295.26920 * 20 19 17 22 22 C 1.35905 * 117.85274 * 49.14499 * 21 20 19 23 23 C 1.39340 * 118.49182 * 162.95022 * 22 21 20 24 24 F 1.35097 * 119.91085 * 359.84094 * 23 22 21 25 25 C 1.38132 * 120.17899 * 179.80823 * 23 22 21 26 26 C 1.38311 * 119.92654 * 359.97438 * 25 23 22 27 27 C 1.38077 * 119.99808 * 0.08055 * 26 25 23 28 28 C 1.38281 * 121.81858 * 342.90770 * 22 21 20 29 29 H 0.97004 * 119.99849 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46890 * 60.00372 * 9 7 2 31 31 H 1.08994 * 109.46941 * 299.99565 * 9 7 2 32 32 H 1.08996 * 109.46833 * 60.00605 * 10 9 7 33 33 H 1.08994 * 109.47192 * 299.99679 * 10 9 7 34 34 H 1.00898 * 111.00354 * 176.04606 * 13 11 10 35 35 H 1.00900 * 110.99611 * 300.00476 * 13 11 10 36 36 H 0.97000 * 119.99339 * 0.02562 * 16 14 11 37 37 H 1.09005 * 109.69369 * 287.95110 * 19 17 16 38 38 H 1.09002 * 109.69574 * 48.54087 * 19 17 16 39 39 H 1.08996 * 109.68729 * 54.98950 * 20 19 17 40 40 H 1.08999 * 109.68889 * 175.51456 * 20 19 17 41 41 H 1.08002 * 120.04019 * 179.97438 * 25 23 22 42 42 H 1.07993 * 119.99883 * 180.02562 * 26 25 23 43 43 H 1.07994 * 119.81705 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 6 5.5514 -2.6367 0.0022 12 1 5.9148 -2.0465 0.8435 13 7 6.0411 -2.0523 -1.2534 14 6 6.0537 -4.0519 0.1271 15 8 6.4278 -4.6519 -0.8583 16 7 6.0873 -4.6511 1.3340 17 6 6.5700 -6.0290 1.4545 18 1 7.3750 -6.1953 0.7386 19 6 7.0940 -6.2628 2.8736 20 6 7.3145 -7.7690 3.0635 21 8 6.0471 -8.4228 2.9835 22 6 5.2402 -8.1173 1.9336 23 6 4.1866 -8.9780 1.6324 24 9 3.9897 -10.0880 2.3769 25 6 3.3425 -8.6990 0.5752 26 6 3.5430 -7.5621 -0.1864 27 6 4.5870 -6.7082 0.1094 28 6 5.4389 -6.9836 1.1671 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8911 31 1 3.8752 -0.6805 -0.8888 32 1 3.6585 -3.1509 -0.8875 33 1 3.6578 -3.1498 0.8924 34 1 7.0476 -1.9818 -1.2512 35 1 5.7175 -2.5818 -2.0490 36 1 5.7877 -4.1713 2.1221 37 1 8.0372 -5.7334 3.0088 38 1 6.3635 -5.9040 3.5987 39 1 7.9720 -8.1455 2.2800 40 1 7.7629 -7.9543 4.0396 41 1 2.5268 -9.3680 0.3436 42 1 2.8835 -7.3426 -1.0129 43 1 4.7411 -5.8215 -0.4875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424169950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:46 Heat of formation + Delta-G solvation = -124.375291 kcal Electronic energy + Delta-G solvation = -27459.107386 eV Core-core repulsion = 23417.452081 eV Total energy + Delta-G solvation = -4041.655305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.90098 -42.13894 -40.75512 -38.58742 -37.13113 -36.49740 -34.77277 -33.02237 -32.27355 -31.80409 -30.95188 -28.56800 -26.69326 -25.11248 -24.76953 -23.43202 -22.13910 -21.54110 -21.15867 -19.13343 -19.02092 -18.57003 -18.07966 -17.87402 -17.48467 -16.92104 -16.78782 -16.56668 -16.21458 -15.97272 -15.66230 -15.55806 -15.41914 -14.91545 -14.79092 -14.60474 -14.22661 -13.96633 -13.94581 -13.53686 -13.45643 -13.16523 -12.81509 -12.70214 -12.46437 -12.35240 -11.93858 -11.88013 -11.87954 -11.78478 -11.59349 -11.26979 -11.11600 -10.69898 -10.33212 -9.88636 -9.63743 -9.32346 -8.23499 -6.26653 -0.03469 0.10766 1.42603 1.43606 1.44818 1.56163 1.98099 2.14929 2.42440 2.50647 3.04930 3.13482 3.41281 3.53588 3.57033 3.65855 3.79311 3.92793 4.00515 4.10016 4.15147 4.21377 4.28415 4.32526 4.43019 4.56752 4.72207 4.74675 4.83219 4.85619 4.91901 4.98569 5.14245 5.17454 5.26346 5.41381 5.52476 5.58004 5.67425 5.74416 6.08785 6.21946 6.34039 6.40976 6.54988 6.82419 7.09088 7.38001 8.93421 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.003292 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.485689 B = 8504.579828 C = 9369.225070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.240 1.240 7 C -0.530 4.530 8 H 0.028 0.972 9 C 0.003 3.997 10 C -0.078 4.078 11 C 0.085 3.915 12 H 0.121 0.879 13 N -0.819 5.819 14 C 0.492 3.508 15 O -0.569 6.569 16 N -0.708 5.708 17 C 0.190 3.810 18 H 0.097 0.903 19 C -0.158 4.158 20 C 0.058 3.942 21 O -0.324 6.324 22 C 0.103 3.897 23 C 0.042 3.958 24 F -0.141 7.141 25 C -0.113 4.113 26 C -0.132 4.132 27 C -0.092 4.092 28 C -0.157 4.157 29 H 0.264 0.736 30 H 0.023 0.977 31 H 0.028 0.972 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.350 0.650 35 H 0.346 0.654 36 H 0.417 0.583 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.147 0.853 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.164 -15.161 6.584 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.163 1.163 7 C -0.568 4.568 8 H 0.046 0.954 9 C -0.035 4.035 10 C -0.117 4.117 11 C -0.031 4.031 12 H 0.139 0.861 13 N -0.348 5.348 14 C 0.278 3.722 15 O -0.449 6.449 16 N -0.359 5.359 17 C 0.084 3.916 18 H 0.115 0.885 19 C -0.196 4.196 20 C -0.016 4.016 21 O -0.238 6.238 22 C 0.057 3.943 23 C 0.023 3.977 24 F -0.120 7.120 25 C -0.132 4.132 26 C -0.150 4.150 27 C -0.110 4.110 28 C -0.159 4.159 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.254 0.746 37 H 0.142 0.858 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.164 0.836 41 H 0.181 0.819 42 H 0.165 0.835 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.867 -14.973 6.288 24.894 hybrid contribution -0.203 -0.193 -0.071 0.289 sum 18.664 -15.166 6.217 24.840 Atomic orbital electron populations 1.70087 1.08434 1.27986 1.53193 1.26009 0.95527 1.03576 0.94282 0.85615 0.79627 0.78099 0.78976 1.19769 1.21511 1.16304 1.21572 0.92597 0.92793 1.49842 0.95398 1.19369 0.92771 0.94067 0.97290 1.21248 0.90903 0.98602 1.00936 1.21679 0.96465 0.88860 0.96120 0.86082 1.58999 1.16628 1.56016 1.03152 1.22410 0.76400 0.90480 0.82950 1.90670 1.49413 1.66867 1.37912 1.46105 1.65690 1.13754 1.10374 1.19721 0.92668 0.79821 0.99354 0.88540 1.22529 1.05060 0.97899 0.94102 1.23366 0.81649 0.90589 1.06039 1.86046 1.30051 1.65952 1.41792 1.18676 0.92543 0.93422 0.89705 1.17401 0.99334 0.85685 0.95315 1.91459 1.94835 1.50037 1.75673 1.21261 0.99401 0.98963 0.93563 1.21187 0.98622 0.94149 1.01010 1.21412 0.94035 0.99792 0.95808 1.20245 1.01398 0.96193 0.98107 0.92724 0.95837 0.95384 0.93984 0.91876 0.83651 0.83994 0.74620 0.85771 0.89179 0.90480 0.83615 0.81905 0.83505 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.15 13.96 21.44 0.30 -59.85 16 2 C 0.00 0.12 5.47 84.65 0.46 0.59 16 3 Si 0.95 44.11 27.47 68.60 1.88 45.99 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 7 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 9 C 0.00 0.11 3.93 29.85 0.12 0.23 16 10 C -0.08 -2.79 4.78 30.60 0.15 -2.64 16 11 C 0.08 2.23 3.15 44.17 0.14 2.37 16 12 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 13 N -0.82 -21.90 8.44 -171.81 -1.45 -23.35 16 14 C 0.49 12.13 5.62 87.65 0.49 12.62 16 15 O -0.57 -17.00 14.17 -3.04 -0.04 -17.04 16 16 N -0.71 -13.50 4.86 -445.87 -2.17 -15.67 16 17 C 0.19 3.47 2.70 44.29 0.12 3.59 16 18 H 0.10 1.93 7.57 -2.38 -0.02 1.91 16 19 C -0.16 -1.73 5.67 30.75 0.17 -1.55 16 20 C 0.06 0.67 7.03 72.12 0.51 1.18 16 21 O -0.32 -6.90 10.09 -92.48 -0.93 -7.83 16 22 C 0.10 2.53 6.48 22.55 0.15 2.67 16 23 C 0.04 1.09 7.30 22.51 0.16 1.25 16 24 F -0.14 -3.80 17.05 44.97 0.77 -3.04 16 25 C -0.11 -2.60 10.02 22.26 0.22 -2.38 16 26 C -0.13 -3.23 10.04 22.25 0.22 -3.00 16 27 C -0.09 -2.48 9.07 22.31 0.20 -2.28 16 28 C -0.16 -3.74 5.56 -19.75 -0.11 -3.85 16 29 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 31 H 0.03 1.26 7.18 -2.39 -0.02 1.24 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.35 7.66 9.06 -89.70 -0.81 6.85 16 35 H 0.35 9.83 8.58 -89.69 -0.77 9.06 16 36 H 0.42 6.30 8.58 -92.71 -0.80 5.50 16 37 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.09 1.01 8.11 -2.39 -0.02 0.99 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 42 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 43 H 0.13 3.78 4.68 -2.91 -0.01 3.76 16 Total: -1.00 -74.11 355.51 0.26 -73.85 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -1.36 Total: 27.93 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.26 Total: -20.99 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -3.32 Total: -98.87 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.98 Total: -24.88 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.77 Total: -3.04 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Total: -74.11 0.26 -73.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424169950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.521 kcal (2) G-P(sol) polarization free energy of solvation -74.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds