Wall clock time and date at job start Tue Mar 31 2020 13:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39654 * 120.14986 * 350.61872 * 3 2 1 5 5 C 1.37930 * 119.84358 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.15173 * 0.02562 * 5 4 3 7 7 C 1.38333 * 120.30642 * 0.02562 * 6 5 4 8 8 C 1.37970 * 120.15027 * 359.97438 * 7 6 5 9 9 C 1.50709 * 120.07529 * 180.02562 * 8 7 6 10 10 O 1.42900 * 109.46997 * 359.97438 * 9 8 7 11 11 C 1.35901 * 116.99925 * 179.97438 * 10 9 8 12 12 C 1.38758 * 120.05395 * 359.73301 * 11 10 9 13 13 C 1.38128 * 119.94164 * 179.69169 * 12 11 10 14 14 C 1.38289 * 120.05179 * 0.60434 * 13 12 11 15 15 C 1.38234 * 120.11489 * 359.66885 * 14 13 12 16 16 C 1.50700 * 119.97178 * 180.02562 * 15 14 13 17 17 N 1.46900 * 109.47493 * 270.02560 * 16 15 14 18 18 C 1.46898 * 111.00357 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47195 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00152 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99851 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99710 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99892 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47436 * 89.99499 * 23 21 19 25 25 H 1.48498 * 109.47178 * 209.99673 * 23 21 19 26 26 H 1.48506 * 109.47455 * 329.99568 * 23 21 19 27 27 C 1.38166 * 120.05645 * 0.02977 * 15 14 13 28 28 H 1.07994 * 120.08031 * 0.04296 * 4 3 2 29 29 H 1.07998 * 119.92071 * 180.29633 * 5 4 3 30 30 H 1.07998 * 119.84643 * 179.97438 * 6 5 4 31 31 H 1.08004 * 119.92590 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.47136 * 120.00368 * 9 8 7 33 33 H 1.09000 * 109.47163 * 240.00314 * 9 8 7 34 34 H 1.07995 * 120.03020 * 359.97421 * 12 11 10 35 35 H 1.07993 * 119.97032 * 180.29656 * 13 12 11 36 36 H 1.08002 * 119.94120 * 179.69540 * 14 13 12 37 37 H 1.08996 * 109.47101 * 30.03173 * 16 15 14 38 38 H 1.09004 * 109.46889 * 150.02728 * 16 15 14 39 39 H 1.00902 * 110.99892 * 56.04095 * 17 16 15 40 40 H 1.08997 * 109.46793 * 300.00049 * 18 17 16 41 41 H 1.09000 * 109.46977 * 59.99715 * 18 17 16 42 42 H 0.96998 * 119.99688 * 179.97438 * 22 21 19 43 43 H 1.08005 * 120.03008 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.1905 0.1968 5 6 4.6492 -1.1825 0.1962 6 6 5.3374 0.0022 0.0016 7 6 4.6484 1.1859 -0.1929 8 6 3.2687 1.1923 -0.1946 9 6 2.5198 2.4828 -0.4073 10 8 3.4522 3.5514 -0.5821 11 6 2.9372 4.7923 -0.7869 12 6 1.5624 4.9765 -0.8246 13 6 1.0414 6.2398 -1.0266 14 6 1.8888 7.3182 -1.2037 15 6 3.2588 7.1363 -1.1722 16 6 4.1792 8.3138 -1.3650 17 7 4.4794 8.4720 -2.7943 18 6 5.3768 9.6127 -3.0208 19 6 5.6619 9.7427 -4.4948 20 1 5.2202 9.0477 -5.1936 21 6 6.4858 10.7496 -4.9515 22 7 6.7350 10.8627 -6.2378 23 14 7.2491 11.9521 -3.7429 24 1 8.5598 11.4269 -3.2831 25 1 7.4477 13.2644 -4.4090 26 1 6.3465 12.1210 -2.5757 27 6 3.7849 5.8757 -0.9643 28 1 2.7342 -2.1157 0.3490 29 1 5.1933 -2.1037 0.3435 30 1 6.4174 0.0029 0.0024 31 1 5.1917 2.1069 -0.3446 32 1 1.8937 2.3974 -1.2954 33 1 1.8929 2.6864 0.4609 34 1 0.9003 4.1338 -0.6915 35 1 -0.0285 6.3845 -1.0512 36 1 1.4795 8.3043 -1.3664 37 1 3.6961 9.2173 -0.9930 38 1 5.1055 8.1447 -0.8158 39 1 3.6317 8.5657 -3.3336 40 1 4.9023 10.5254 -2.6602 41 1 6.3112 9.4522 -2.4831 42 1 7.3142 11.5712 -6.5591 43 1 4.8553 5.7342 -0.9394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425997843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:18 Heat of formation + Delta-G solvation = 45.518257 kcal Electronic energy + Delta-G solvation = -24402.716070 eV Core-core repulsion = 20799.197127 eV Total energy + Delta-G solvation = -3603.518943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62663 -39.73828 -37.83967 -36.85717 -35.32691 -32.89913 -32.58846 -31.79268 -31.09799 -29.92647 -27.59831 -27.05689 -24.46563 -24.20938 -22.52945 -22.38940 -21.13720 -20.67530 -19.28103 -17.91612 -16.90747 -16.74648 -16.33422 -16.12897 -15.75508 -15.57143 -15.03626 -14.87152 -14.50000 -14.28153 -13.96915 -13.93450 -13.62400 -13.56299 -13.26431 -13.16712 -13.05044 -12.84900 -12.55062 -12.37117 -11.91897 -11.77041 -11.61623 -11.56960 -11.42514 -11.30269 -10.86953 -10.63882 -10.43551 -9.88007 -9.46613 -9.32055 -9.31307 -8.78181 -8.59777 -8.22342 -7.50341 -6.06522 -4.04743 0.23491 0.78377 1.35968 1.48333 2.18971 2.49733 2.79624 3.28213 3.33891 3.35392 3.37039 3.37185 3.78982 4.08142 4.38315 4.41008 4.49995 4.66317 4.79573 4.80775 4.84781 4.89333 4.96952 5.08722 5.19169 5.25597 5.33171 5.35236 5.44637 5.45426 5.56490 5.72271 5.82587 5.87904 5.94146 6.04454 6.11507 6.29031 6.29872 6.45186 6.67608 6.71670 6.82989 6.99123 6.99869 7.30757 7.57295 7.84969 8.28570 8.63141 9.01828 9.54887 11.06734 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.002136 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.372407 B =13106.842102 C =14122.140106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.249 3.751 3 C -0.027 4.027 4 C -0.069 4.069 5 C -0.121 4.121 6 C -0.086 4.086 7 C -0.096 4.096 8 C -0.040 4.040 9 C 0.095 3.905 10 O -0.308 6.308 11 C 0.124 3.876 12 C -0.214 4.214 13 C -0.082 4.082 14 C -0.149 4.149 15 C -0.029 4.029 16 C 0.091 3.909 17 N -0.674 5.674 18 C 0.164 3.836 19 C -0.516 4.516 20 H 0.079 0.921 21 C 0.068 3.932 22 N -0.900 5.900 23 Si 0.878 3.122 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.268 1.268 27 C -0.125 4.125 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.338 0.662 40 H -0.015 1.015 41 H 0.023 0.977 42 H 0.264 0.736 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 -22.914 16.965 29.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.066 4.066 3 C -0.030 4.030 4 C -0.089 4.089 5 C -0.139 4.139 6 C -0.105 4.105 7 C -0.114 4.114 8 C -0.043 4.043 9 C 0.020 3.980 10 O -0.222 6.222 11 C 0.079 3.921 12 C -0.233 4.233 13 C -0.100 4.100 14 C -0.167 4.167 15 C -0.030 4.030 16 C -0.039 4.039 17 N -0.304 5.304 18 C 0.036 3.964 19 C -0.554 4.554 20 H 0.097 0.903 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.705 3.295 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.193 1.193 27 C -0.144 4.144 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.165 0.835 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.155 0.845 40 H 0.003 0.997 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.871 -23.306 16.841 29.812 hybrid contribution 0.008 1.352 0.601 1.479 sum -7.863 -21.954 17.443 29.122 Atomic orbital electron populations 1.81296 1.11880 1.06921 1.08407 1.25712 0.92687 0.94146 0.94054 1.15653 0.84211 0.94435 1.08716 1.21120 0.94485 0.96220 0.97094 1.21175 0.93551 0.98892 1.00269 1.21518 1.00921 0.92145 0.95874 1.21093 0.92726 0.99550 0.98039 1.19597 0.94503 0.91922 0.98236 1.21450 0.90951 0.83617 1.01977 1.85978 1.34811 1.14167 1.87269 1.18875 0.91936 0.83978 0.97295 1.21134 0.93660 0.98721 1.09820 1.20850 0.99554 0.91912 0.97674 1.21022 0.92957 0.99205 1.03557 1.19771 0.93775 0.94344 0.95101 1.20949 0.97077 0.93027 0.92811 1.60532 1.19622 1.46656 1.03621 1.20031 0.91854 0.86414 0.98096 1.21047 1.29526 1.14302 0.90573 0.90258 1.24913 0.96083 0.97324 0.95064 1.69899 1.37637 1.33243 1.13071 0.86815 0.80129 0.80852 0.81658 1.20103 1.21215 1.19260 1.20290 0.99908 0.89800 1.04405 0.84713 0.84718 0.84747 0.83541 0.90214 0.90345 0.86136 0.86005 0.85996 0.94967 0.90567 0.84498 0.99722 0.95861 0.92627 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.56 18.54 41.84 0.78 -3.78 16 2 C 0.25 2.22 14.39 -22.47 -0.32 1.89 16 3 C -0.03 -0.19 5.73 -106.93 -0.61 -0.80 16 4 C -0.07 -0.35 9.76 -39.17 -0.38 -0.74 16 5 C -0.12 -0.52 10.03 -39.64 -0.40 -0.92 16 6 C -0.09 -0.45 10.04 -39.49 -0.40 -0.84 16 7 C -0.10 -0.69 9.37 -39.64 -0.37 -1.06 16 8 C -0.04 -0.31 5.91 -104.21 -0.62 -0.93 16 9 C 0.10 0.85 4.14 36.01 0.15 1.00 16 10 O -0.31 -3.49 8.62 -19.43 -0.17 -3.66 16 11 C 0.12 1.59 6.69 -39.22 -0.26 1.33 16 12 C -0.21 -2.53 9.04 -39.43 -0.36 -2.89 16 13 C -0.08 -0.97 10.04 -39.60 -0.40 -1.37 16 14 C -0.15 -1.97 9.70 -39.56 -0.38 -2.35 16 15 C -0.03 -0.43 5.39 -104.65 -0.56 -1.00 16 16 C 0.09 1.50 5.81 -4.98 -0.03 1.47 16 17 N -0.67 -13.89 6.48 -116.34 -0.75 -14.64 16 18 C 0.16 3.94 4.51 -4.98 -0.02 3.92 16 19 C -0.52 -14.78 9.87 -34.44 -0.34 -15.12 16 20 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 22 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 23 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 27 C -0.12 -1.78 9.64 -39.43 -0.38 -2.16 16 28 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 29 H 0.13 0.26 8.06 -52.49 -0.42 -0.16 16 30 H 0.13 0.44 8.06 -52.49 -0.42 0.01 16 31 H 0.15 1.12 7.00 -52.48 -0.37 0.75 16 32 H 0.08 0.70 7.65 -51.93 -0.40 0.31 16 33 H 0.08 0.65 7.67 -51.93 -0.40 0.25 16 34 H 0.12 1.19 6.30 -52.49 -0.33 0.86 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 39 H 0.34 6.84 8.72 -39.29 -0.34 6.49 16 40 H -0.01 -0.36 7.20 -51.93 -0.37 -0.73 16 41 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -32.76 374.32 -9.75 -42.52 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.57 Total: 2.71 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -5.78 Total: -18.69 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.80 Total: -45.31 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.17 Total: -3.66 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.76 -9.75 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425997843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.033 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds