Wall clock time and date at job start Tue Mar 31 2020 13:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39654 * 120.14986 * 350.61872 * 3 2 1 5 5 C 1.37930 * 119.84358 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.15173 * 0.02562 * 5 4 3 7 7 C 1.38333 * 120.30642 * 0.02562 * 6 5 4 8 8 C 1.37970 * 120.15027 * 359.97438 * 7 6 5 9 9 C 1.50709 * 120.07529 * 180.02562 * 8 7 6 10 10 O 1.42900 * 109.46997 * 359.97438 * 9 8 7 11 11 C 1.35901 * 116.99925 * 179.97438 * 10 9 8 12 12 C 1.38758 * 120.05395 * 359.73301 * 11 10 9 13 13 C 1.38128 * 119.94164 * 179.69169 * 12 11 10 14 14 C 1.38289 * 120.05179 * 0.60434 * 13 12 11 15 15 C 1.38234 * 120.11489 * 359.66885 * 14 13 12 16 16 C 1.50700 * 119.97178 * 180.02562 * 15 14 13 17 17 N 1.46900 * 109.47493 * 270.02560 * 16 15 14 18 18 C 1.46898 * 111.00357 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47195 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00152 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99851 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99710 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99892 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47436 * 89.99499 * 23 21 19 25 25 H 1.48498 * 109.47178 * 209.99673 * 23 21 19 26 26 H 1.48506 * 109.47455 * 329.99568 * 23 21 19 27 27 C 1.38166 * 120.05645 * 0.02977 * 15 14 13 28 28 H 1.07994 * 120.08031 * 0.04296 * 4 3 2 29 29 H 1.07998 * 119.92071 * 180.29633 * 5 4 3 30 30 H 1.07998 * 119.84643 * 179.97438 * 6 5 4 31 31 H 1.08004 * 119.92590 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.47136 * 120.00368 * 9 8 7 33 33 H 1.09000 * 109.47163 * 240.00314 * 9 8 7 34 34 H 1.07995 * 120.03020 * 359.97421 * 12 11 10 35 35 H 1.07993 * 119.97032 * 180.29656 * 13 12 11 36 36 H 1.08002 * 119.94120 * 179.69540 * 14 13 12 37 37 H 1.08996 * 109.47101 * 30.03173 * 16 15 14 38 38 H 1.09004 * 109.46889 * 150.02728 * 16 15 14 39 39 H 1.00902 * 110.99892 * 56.04095 * 17 16 15 40 40 H 1.08997 * 109.46793 * 300.00049 * 18 17 16 41 41 H 1.09000 * 109.46977 * 59.99715 * 18 17 16 42 42 H 0.96998 * 119.99688 * 179.97438 * 22 21 19 43 43 H 1.08005 * 120.03008 * 180.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.1905 0.1968 5 6 4.6492 -1.1825 0.1962 6 6 5.3374 0.0022 0.0016 7 6 4.6484 1.1859 -0.1929 8 6 3.2687 1.1923 -0.1946 9 6 2.5198 2.4828 -0.4073 10 8 3.4522 3.5514 -0.5821 11 6 2.9372 4.7923 -0.7869 12 6 1.5624 4.9765 -0.8246 13 6 1.0414 6.2398 -1.0266 14 6 1.8888 7.3182 -1.2037 15 6 3.2588 7.1363 -1.1722 16 6 4.1792 8.3138 -1.3650 17 7 4.4794 8.4720 -2.7943 18 6 5.3768 9.6127 -3.0208 19 6 5.6619 9.7427 -4.4948 20 1 5.2202 9.0477 -5.1936 21 6 6.4858 10.7496 -4.9515 22 7 6.7350 10.8627 -6.2378 23 14 7.2491 11.9521 -3.7429 24 1 8.5598 11.4269 -3.2831 25 1 7.4477 13.2644 -4.4090 26 1 6.3465 12.1210 -2.5757 27 6 3.7849 5.8757 -0.9643 28 1 2.7342 -2.1157 0.3490 29 1 5.1933 -2.1037 0.3435 30 1 6.4174 0.0029 0.0024 31 1 5.1917 2.1069 -0.3446 32 1 1.8937 2.3974 -1.2954 33 1 1.8929 2.6864 0.4609 34 1 0.9003 4.1338 -0.6915 35 1 -0.0285 6.3845 -1.0512 36 1 1.4795 8.3043 -1.3664 37 1 3.6961 9.2173 -0.9930 38 1 5.1055 8.1447 -0.8158 39 1 3.6317 8.5657 -3.3336 40 1 4.9023 10.5254 -2.6602 41 1 6.3112 9.4522 -2.4831 42 1 7.3142 11.5712 -6.5591 43 1 4.8553 5.7342 -0.9394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425997843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:18 Heat of formation + Delta-G solvation = 26.380910 kcal Electronic energy + Delta-G solvation = -24403.545927 eV Core-core repulsion = 20799.197127 eV Total energy + Delta-G solvation = -3604.348801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41604 -40.42788 -38.82494 -37.56276 -36.87894 -34.62559 -33.45950 -32.45734 -32.29469 -30.90985 -29.26127 -27.82575 -25.86273 -24.76442 -23.48717 -23.22706 -22.95283 -21.61670 -19.84462 -19.15767 -18.56872 -17.59585 -17.12676 -17.10164 -16.75956 -16.47475 -16.17592 -15.89770 -15.54876 -15.40409 -15.16152 -14.91292 -14.75946 -14.52403 -14.33088 -14.16052 -13.95645 -13.87446 -13.71449 -13.40020 -13.19149 -12.98208 -12.78626 -12.50007 -12.39605 -12.24700 -12.12379 -12.07834 -11.84964 -11.68297 -11.47927 -10.80435 -9.94922 -9.87503 -9.79031 -9.24858 -9.09424 -8.29474 -6.34461 -0.27571 0.31574 0.33728 0.48079 1.36750 1.38330 1.49324 1.50742 1.90370 1.97869 2.35012 2.74346 2.76463 2.82939 3.04508 3.46706 3.65092 3.84031 3.88122 3.93659 4.00880 4.11017 4.15636 4.18798 4.28899 4.39333 4.45794 4.49784 4.52616 4.70618 4.72783 4.75472 4.85858 5.00636 5.06369 5.07486 5.27420 5.31593 5.37568 5.46033 5.51256 5.53113 5.66449 5.78524 5.87360 5.93622 6.33592 6.37751 6.53677 6.63033 6.75198 7.30303 8.87342 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.002136 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.372407 B =13106.842102 C =14122.140106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.271 3.729 3 C -0.039 4.039 4 C -0.062 4.062 5 C -0.113 4.113 6 C -0.081 4.081 7 C -0.113 4.113 8 C -0.052 4.052 9 C 0.092 3.908 10 O -0.314 6.314 11 C 0.119 3.881 12 C -0.213 4.213 13 C -0.080 4.080 14 C -0.156 4.156 15 C -0.044 4.044 16 C 0.095 3.905 17 N -0.684 5.684 18 C 0.174 3.826 19 C -0.529 4.529 20 H 0.035 0.965 21 C 0.006 3.994 22 N -0.948 5.948 23 Si 0.954 3.046 24 H -0.265 1.265 25 H -0.281 1.281 26 H -0.248 1.248 27 C -0.142 4.142 28 H 0.157 0.843 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.136 0.864 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.132 0.868 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.337 0.663 40 H -0.009 1.009 41 H 0.027 0.973 42 H 0.268 0.732 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 -24.033 19.215 31.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.043 4.043 3 C -0.043 4.043 4 C -0.082 4.082 5 C -0.131 4.131 6 C -0.100 4.100 7 C -0.131 4.131 8 C -0.054 4.054 9 C 0.018 3.982 10 O -0.228 6.228 11 C 0.074 3.926 12 C -0.232 4.232 13 C -0.097 4.097 14 C -0.175 4.175 15 C -0.045 4.045 16 C -0.034 4.034 17 N -0.315 5.315 18 C 0.046 3.954 19 C -0.567 4.567 20 H 0.053 0.947 21 C -0.192 4.192 22 N -0.588 5.588 23 Si 0.777 3.223 24 H -0.190 1.190 25 H -0.207 1.207 26 H -0.172 1.172 27 C -0.161 4.161 28 H 0.174 0.826 29 H 0.185 0.815 30 H 0.173 0.827 31 H 0.153 0.847 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.154 0.846 40 H 0.009 0.991 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.671 -24.450 19.110 31.966 hybrid contribution -0.060 1.513 -0.136 1.520 sum -7.731 -22.937 18.975 30.756 Atomic orbital electron populations 1.81308 1.13137 1.08386 1.10304 1.25949 0.92869 0.92818 0.92684 1.15721 0.83233 0.95075 1.10253 1.21449 0.95059 0.96139 0.95564 1.21547 0.93235 0.99713 0.98564 1.21814 1.02081 0.91643 0.94420 1.21116 0.92525 1.00189 0.99267 1.19536 0.94842 0.91526 0.99525 1.21581 0.90949 0.83566 1.02143 1.85978 1.35683 1.14090 1.87013 1.18942 0.92320 0.84308 0.96982 1.21421 0.93488 0.99549 1.08756 1.21179 1.00856 0.91344 0.96356 1.21199 0.92491 1.00277 1.03520 1.19638 0.94219 0.93796 0.96822 1.20942 0.97939 0.94440 0.90038 1.60410 1.19528 1.45091 1.06471 1.19782 0.92854 0.87908 0.94857 1.21329 1.29355 1.13528 0.92534 0.94694 1.25924 0.96588 0.99536 0.97116 1.70059 1.38782 1.34467 1.15525 0.85616 0.79552 0.77824 0.79321 1.18976 1.20692 1.17183 1.20328 0.99976 0.90379 1.05455 0.82554 0.81544 0.82666 0.84655 0.90336 0.89833 0.84200 0.83273 0.84985 0.93786 0.90287 0.84586 0.99098 0.95449 0.92331 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.05 18.54 19.00 0.35 -9.70 16 2 C 0.27 4.65 14.39 88.33 1.27 5.92 16 3 C -0.04 -0.51 5.73 -21.36 -0.12 -0.64 16 4 C -0.06 -0.47 9.76 22.54 0.22 -0.26 16 5 C -0.11 -0.60 10.03 22.23 0.22 -0.38 16 6 C -0.08 -0.66 10.04 22.33 0.22 -0.43 16 7 C -0.11 -1.54 9.37 22.23 0.21 -1.33 16 8 C -0.05 -0.78 5.91 -19.59 -0.12 -0.90 16 9 C 0.09 1.63 4.14 71.24 0.30 1.93 16 10 O -0.31 -7.13 8.62 -92.43 -0.80 -7.93 16 11 C 0.12 3.04 6.69 22.51 0.15 3.19 16 12 C -0.21 -4.78 9.04 22.37 0.20 -4.58 16 13 C -0.08 -1.74 10.04 22.26 0.22 -1.52 16 14 C -0.16 -3.96 9.70 22.28 0.22 -3.75 16 15 C -0.04 -1.29 5.39 -19.88 -0.11 -1.39 16 16 C 0.09 3.08 5.81 85.56 0.50 3.58 16 17 N -0.68 -28.36 6.48 -522.00 -3.38 -31.74 16 18 C 0.17 8.34 4.51 85.56 0.39 8.73 16 19 C -0.53 -31.06 9.87 25.60 0.25 -30.81 16 20 H 0.03 2.29 8.06 -2.91 -0.02 2.26 16 21 C 0.01 0.34 5.47 84.66 0.46 0.80 16 22 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 23 Si 0.95 43.94 27.47 68.60 1.88 45.83 16 24 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 26 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 27 C -0.14 -4.08 9.64 22.36 0.22 -3.86 16 28 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 29 H 0.17 -0.12 8.06 -2.91 -0.02 -0.15 16 30 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 31 H 0.14 2.10 7.00 -2.91 -0.02 2.08 16 32 H 0.08 1.37 7.65 -2.39 -0.02 1.36 16 33 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 34 H 0.14 2.53 6.30 -2.91 -0.02 2.51 16 35 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 37 H 0.04 1.33 8.08 -2.39 -0.02 1.31 16 38 H 0.08 2.49 8.08 -2.38 -0.02 2.47 16 39 H 0.34 13.88 8.72 -89.69 -0.78 13.10 16 40 H -0.01 -0.40 7.20 -2.39 -0.02 -0.42 16 41 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 42 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 43 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -72.71 374.32 3.26 -69.45 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.20 Total: 19.19 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 4.70 Total: -25.68 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -2.73 Total: -100.86 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.80 Total: -7.93 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -72.71 3.26 -69.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425997843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.834 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds