Wall clock time and date at job start Tue Mar 31 2020 13:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99666 * 2 1 4 4 H 1.48502 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47488 * 299.99565 * 3 2 1 6 6 H 1.48498 * 109.47242 * 60.00075 * 3 2 1 7 7 C 1.37873 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47139 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00164 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99563 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00096 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99971 * 184.93021 * 13 11 10 15 15 H 1.08989 * 109.46853 * 29.88114 * 14 13 11 16 16 C 1.50703 * 109.46769 * 149.88119 * 14 13 11 17 17 C 1.38243 * 119.97740 * 39.72487 * 16 14 13 18 18 C 1.38200 * 120.02620 * 179.76485 * 17 16 14 19 19 C 1.38457 * 119.96986 * 0.51106 * 18 17 16 20 20 F 1.35107 * 120.02517 * 179.76322 * 19 18 17 21 21 C 1.38455 * 119.95398 * 359.74488 * 19 18 17 22 22 C 1.38195 * 119.97297 * 359.97438 * 21 19 18 23 23 C 1.53003 * 109.47261 * 269.87944 * 14 13 11 24 24 H 1.08999 * 109.82231 * 293.64333 * 23 14 13 25 25 C 1.54375 * 109.82965 * 172.65986 * 23 14 13 26 26 C 1.55306 * 102.25414 * 219.13028 * 25 23 14 27 27 C 1.54943 * 100.93975 * 34.13524 * 26 25 23 28 28 O 1.43236 * 109.82946 * 54.52363 * 23 14 13 29 29 H 0.97004 * 120.00087 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46973 * 59.99821 * 9 7 2 31 31 H 1.08997 * 109.47093 * 299.99777 * 9 7 2 32 32 H 0.97000 * 119.99922 * 0.02562 * 10 9 7 33 33 H 0.97002 * 120.00204 * 5.21310 * 13 11 10 34 34 H 1.07995 * 119.98829 * 0.02562 * 17 16 14 35 35 H 1.08001 * 120.01366 * 180.25331 * 18 17 16 36 36 H 1.08005 * 120.01818 * 179.97438 * 21 19 18 37 37 H 1.08001 * 119.99166 * 179.97438 * 22 21 19 38 38 H 1.09001 * 110.85236 * 337.32235 * 25 23 14 39 39 H 1.09009 * 110.84777 * 100.93863 * 25 23 14 40 40 H 1.09000 * 111.12195 * 276.21676 * 26 25 23 41 41 H 1.09000 * 111.12372 * 152.05668 * 26 25 23 42 42 H 1.09003 * 110.31200 * 204.64410 * 27 26 25 43 43 H 1.08991 * 110.39833 * 82.51383 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5584 -5.1055 0.0011 13 7 2.6296 -5.9077 0.0005 14 6 2.1448 -7.2859 -0.1079 15 1 1.2188 -7.3011 -0.6826 16 6 3.1816 -8.1298 -0.8035 17 6 4.5230 -7.9453 -0.5245 18 6 5.4744 -8.7219 -1.1582 19 6 5.0843 -9.6779 -2.0807 20 9 6.0138 -10.4345 -2.7044 21 6 3.7410 -9.8582 -2.3633 22 6 2.7910 -9.0844 -1.7241 23 6 1.8857 -7.8471 1.2917 24 1 2.8273 -7.9398 1.8329 25 6 1.2030 -9.2275 1.1843 26 6 0.1742 -9.1778 2.3467 27 6 -0.2145 -7.6780 2.3313 28 8 0.9979 -6.9795 2.0064 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 3.1567 -3.4354 0.0009 33 1 3.5807 -5.7327 0.0761 34 1 4.8273 -7.1968 0.1921 35 1 6.5220 -8.5804 -0.9369 36 1 3.4355 -10.6033 -3.0831 37 1 1.7431 -9.2245 -1.9447 38 1 0.6985 -9.3373 0.2243 39 1 1.9243 -10.0301 1.3386 40 1 0.6380 -9.4538 3.2937 41 1 -0.6884 -9.8095 2.1351 42 1 -0.5766 -7.3709 3.3125 43 1 -0.9742 -7.4903 1.5727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:52 Heat of formation + Delta-G solvation = -96.990778 kcal Electronic energy + Delta-G solvation = -27162.571416 eV Core-core repulsion = 23122.103592 eV Total energy + Delta-G solvation = -4040.467823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.15444 -40.44794 -38.83417 -38.57091 -34.92301 -33.87605 -32.38698 -32.10917 -31.46995 -30.86111 -29.16959 -27.09388 -25.24977 -23.53812 -22.52679 -22.28532 -21.65722 -20.61448 -19.97509 -18.33446 -17.82043 -16.81471 -16.62031 -16.24216 -16.08816 -15.83347 -15.61284 -15.22338 -14.78330 -14.58018 -14.25590 -14.02329 -13.84357 -13.61568 -13.45789 -13.23084 -12.97263 -12.80740 -12.46278 -11.98035 -11.88191 -11.67556 -11.64911 -11.38789 -11.24503 -11.11513 -10.94296 -10.86808 -10.84751 -10.23890 -9.57077 -9.42813 -9.28089 -9.24053 -8.87962 -8.65666 -8.49302 -7.63850 -6.09610 -4.15345 0.79214 0.91538 3.17308 3.27643 3.34204 3.37203 3.47350 3.87107 3.97309 4.12784 4.36993 4.40611 4.43167 4.50661 4.58451 4.75177 4.91017 4.95979 5.03395 5.11110 5.21281 5.26570 5.27549 5.37840 5.54164 5.57264 5.63503 5.67148 5.70394 5.80676 5.86805 5.90634 5.96280 6.10119 6.24005 6.55777 6.89743 7.20938 7.26877 7.62077 7.65658 7.67587 7.99632 8.12631 8.85220 9.06945 9.44600 9.61119 11.00731 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.003236 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.536704 B = 8651.752322 C =10419.926696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.269 3.731 10 N -0.732 5.732 11 C 0.700 3.300 12 O -0.587 6.587 13 N -0.747 5.747 14 C 0.198 3.802 15 H 0.101 0.899 16 C -0.094 4.094 17 C -0.081 4.081 18 C -0.149 4.149 19 C 0.095 3.905 20 F -0.142 7.142 21 C -0.150 4.150 22 C -0.076 4.076 23 C 0.075 3.925 24 H 0.077 0.923 25 C -0.147 4.147 26 C -0.156 4.156 27 C 0.053 3.947 28 O -0.348 6.348 29 H 0.264 0.736 30 H 0.023 0.977 31 H 0.024 0.976 32 H 0.384 0.616 33 H 0.388 0.612 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.990 -23.354 0.217 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.148 3.852 10 N -0.384 5.384 11 C 0.400 3.600 12 O -0.464 6.464 13 N -0.404 5.404 14 C 0.091 3.909 15 H 0.119 0.881 16 C -0.095 4.095 17 C -0.100 4.100 18 C -0.168 4.168 19 C 0.076 3.924 20 F -0.120 7.120 21 C -0.169 4.169 22 C -0.095 4.095 23 C 0.015 3.985 24 H 0.094 0.906 25 C -0.185 4.185 26 C -0.194 4.194 27 C -0.024 4.024 28 O -0.266 6.266 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.215 0.785 33 H 0.221 0.779 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.742 -23.161 0.221 24.123 hybrid contribution 1.492 0.722 -0.155 1.665 sum 8.234 -22.439 0.066 23.902 Atomic orbital electron populations 1.69994 1.06060 1.27016 1.49291 1.24940 0.94896 0.99340 0.94900 0.86381 0.79825 0.83121 0.77671 1.19698 1.20872 1.20865 1.21284 0.93275 0.90535 1.52637 0.91990 1.18927 0.87753 0.81036 0.97460 1.45672 1.10554 1.04463 1.77739 1.15988 0.85190 0.80779 0.78017 1.90845 1.13997 1.83921 1.57674 1.45081 1.08937 1.04387 1.81989 1.19897 0.95732 0.80360 0.94949 0.88117 1.20029 0.94391 0.97411 0.97694 1.20851 0.91832 0.98369 0.98915 1.21132 1.01101 0.96705 0.97853 1.17750 0.86300 0.93031 0.95338 1.91503 1.65116 1.74395 1.81018 1.21128 0.91151 1.02211 1.02425 1.20905 0.99855 0.94229 0.94481 1.23127 0.94283 0.88770 0.92354 0.90565 1.23136 0.98592 0.97103 0.99669 1.23283 0.99384 0.97853 0.98867 1.23337 0.88576 0.89700 1.00802 1.88626 1.27102 1.36508 1.74397 0.92614 0.95939 0.95791 0.78466 0.77851 0.84860 0.84565 0.84581 0.84681 0.90328 0.90211 0.90676 0.90130 0.90154 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.37 5.43 -5.19 -0.03 7.34 16 10 N -0.73 -16.11 5.55 -66.41 -0.37 -16.48 16 11 C 0.70 14.67 8.04 -86.93 -0.70 13.97 16 12 O -0.59 -14.57 15.01 -7.71 -0.12 -14.69 16 13 N -0.75 -11.32 4.90 -59.81 -0.29 -11.61 16 14 C 0.20 2.53 2.00 -69.08 -0.14 2.40 16 15 H 0.10 1.50 7.23 -51.94 -0.38 1.13 16 16 C -0.09 -0.94 4.55 -104.61 -0.48 -1.41 16 17 C -0.08 -0.72 9.11 -39.59 -0.36 -1.08 16 18 C -0.15 -1.28 10.03 -39.51 -0.40 -1.68 16 19 C 0.10 0.89 7.30 -39.42 -0.29 0.61 16 20 F -0.14 -1.44 17.27 2.25 0.04 -1.41 16 21 C -0.15 -1.27 10.03 -39.52 -0.40 -1.67 16 22 C -0.08 -0.67 9.33 -39.59 -0.37 -1.04 16 23 C 0.07 0.91 3.26 -26.01 -0.08 0.83 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 C -0.15 -1.35 5.91 -24.79 -0.15 -1.50 16 26 C -0.16 -1.44 7.16 -24.48 -0.18 -1.62 16 27 C 0.05 0.69 7.78 38.18 0.30 0.98 16 28 O -0.35 -5.68 9.35 -48.23 -0.45 -6.13 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.38 7.28 8.34 -40.82 -0.34 6.94 16 33 H 0.39 4.78 6.90 -40.82 -0.28 4.50 16 34 H 0.13 1.01 6.84 -52.49 -0.36 0.65 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.14 0.99 8.04 -52.49 -0.42 0.57 16 38 H 0.08 0.68 7.64 -51.93 -0.40 0.28 16 39 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -34.55 363.02 -9.62 -44.16 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.94 Total: 7.78 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -3.68 Total: 2.54 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.07 Total: -53.89 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.57 Total: -20.81 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.55 -9.62 -44.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.828 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds