Wall clock time and date at job start Tue Mar 31 2020 13:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99666 * 2 1 4 4 H 1.48502 * 109.47014 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47488 * 299.99565 * 3 2 1 6 6 H 1.48498 * 109.47242 * 60.00075 * 3 2 1 7 7 C 1.37873 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47139 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00164 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99563 * 0.02562 * 11 10 9 13 13 N 1.34768 * 120.00096 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99971 * 184.93021 * 13 11 10 15 15 H 1.08989 * 109.46853 * 29.88114 * 14 13 11 16 16 C 1.50703 * 109.46769 * 149.88119 * 14 13 11 17 17 C 1.38243 * 119.97740 * 39.72487 * 16 14 13 18 18 C 1.38200 * 120.02620 * 179.76485 * 17 16 14 19 19 C 1.38457 * 119.96986 * 0.51106 * 18 17 16 20 20 F 1.35107 * 120.02517 * 179.76322 * 19 18 17 21 21 C 1.38455 * 119.95398 * 359.74488 * 19 18 17 22 22 C 1.38195 * 119.97297 * 359.97438 * 21 19 18 23 23 C 1.53003 * 109.47261 * 269.87944 * 14 13 11 24 24 H 1.08999 * 109.82231 * 293.64333 * 23 14 13 25 25 C 1.54375 * 109.82965 * 172.65986 * 23 14 13 26 26 C 1.55306 * 102.25414 * 219.13028 * 25 23 14 27 27 C 1.54943 * 100.93975 * 34.13524 * 26 25 23 28 28 O 1.43236 * 109.82946 * 54.52363 * 23 14 13 29 29 H 0.97004 * 120.00087 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46973 * 59.99821 * 9 7 2 31 31 H 1.08997 * 109.47093 * 299.99777 * 9 7 2 32 32 H 0.97000 * 119.99922 * 0.02562 * 10 9 7 33 33 H 0.97002 * 120.00204 * 5.21310 * 13 11 10 34 34 H 1.07995 * 119.98829 * 0.02562 * 17 16 14 35 35 H 1.08001 * 120.01366 * 180.25331 * 18 17 16 36 36 H 1.08005 * 120.01818 * 179.97438 * 21 19 18 37 37 H 1.08001 * 119.99166 * 179.97438 * 22 21 19 38 38 H 1.09001 * 110.85236 * 337.32235 * 25 23 14 39 39 H 1.09009 * 110.84777 * 100.93863 * 25 23 14 40 40 H 1.09000 * 111.12195 * 276.21676 * 26 25 23 41 41 H 1.09000 * 111.12372 * 152.05668 * 26 25 23 42 42 H 1.09003 * 110.31200 * 204.64410 * 27 26 25 43 43 H 1.08991 * 110.39833 * 82.51383 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5584 -5.1055 0.0011 13 7 2.6296 -5.9077 0.0005 14 6 2.1448 -7.2859 -0.1079 15 1 1.2188 -7.3011 -0.6826 16 6 3.1816 -8.1298 -0.8035 17 6 4.5230 -7.9453 -0.5245 18 6 5.4744 -8.7219 -1.1582 19 6 5.0843 -9.6779 -2.0807 20 9 6.0138 -10.4345 -2.7044 21 6 3.7410 -9.8582 -2.3633 22 6 2.7910 -9.0844 -1.7241 23 6 1.8857 -7.8471 1.2917 24 1 2.8273 -7.9398 1.8329 25 6 1.2030 -9.2275 1.1843 26 6 0.1742 -9.1778 2.3467 27 6 -0.2145 -7.6780 2.3313 28 8 0.9979 -6.9795 2.0064 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 3.1567 -3.4354 0.0009 33 1 3.5807 -5.7327 0.0761 34 1 4.8273 -7.1968 0.1921 35 1 6.5220 -8.5804 -0.9369 36 1 3.4355 -10.6033 -3.0831 37 1 1.7431 -9.2245 -1.9447 38 1 0.6985 -9.3373 0.2243 39 1 1.9243 -10.0301 1.3386 40 1 0.6380 -9.4538 3.2937 41 1 -0.6884 -9.8095 2.1351 42 1 -0.5766 -7.3709 3.3125 43 1 -0.9742 -7.4903 1.5727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426418554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:51 Heat of formation + Delta-G solvation = -120.371438 kcal Electronic energy + Delta-G solvation = -27163.585277 eV Core-core repulsion = 23122.103592 eV Total energy + Delta-G solvation = -4041.481685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88930 -41.52318 -40.09969 -39.66777 -36.35016 -35.71675 -34.31636 -33.18210 -32.20724 -31.95969 -30.04948 -29.07005 -26.38862 -24.62868 -24.12182 -23.11361 -22.55524 -21.87926 -21.34817 -19.88716 -18.69864 -18.13860 -17.71770 -17.55626 -17.18624 -16.96197 -16.57839 -16.46277 -16.17078 -16.04084 -15.53370 -15.29593 -14.94983 -14.63534 -14.49289 -14.28590 -14.05488 -14.02609 -13.97707 -13.58545 -13.22502 -12.87444 -12.75335 -12.65866 -12.49108 -12.36018 -12.19368 -12.03364 -11.93028 -11.71875 -11.41461 -11.06971 -10.78279 -10.70992 -10.09460 -10.03283 -9.63663 -9.44140 -8.26231 -6.42277 0.05499 0.25793 1.43978 1.45756 1.58903 1.93298 2.40555 2.40999 2.58718 2.94552 3.08653 3.27826 3.51038 3.60596 3.70938 3.74840 3.93457 3.97694 4.03573 4.17032 4.26908 4.34223 4.37641 4.49681 4.71150 4.83098 4.90111 4.91965 4.94497 4.98486 5.04280 5.12815 5.14338 5.21937 5.28719 5.32161 5.41363 5.53734 5.65724 5.74885 5.87477 5.90337 6.23881 6.33103 6.70337 7.27419 7.40360 7.87845 8.86436 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.003236 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.536704 B = 8651.752322 C =10419.926696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.291 3.709 10 N -0.728 5.728 11 C 0.698 3.302 12 O -0.630 6.630 13 N -0.726 5.726 14 C 0.200 3.800 15 H 0.075 0.925 16 C -0.101 4.101 17 C -0.082 4.082 18 C -0.147 4.147 19 C 0.084 3.916 20 F -0.148 7.148 21 C -0.148 4.148 22 C -0.076 4.076 23 C 0.067 3.933 24 H 0.089 0.911 25 C -0.139 4.139 26 C -0.142 4.142 27 C 0.041 3.959 28 O -0.391 6.391 29 H 0.268 0.732 30 H -0.017 1.017 31 H -0.019 1.019 32 H 0.401 0.599 33 H 0.404 0.596 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.663 -24.486 0.166 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.167 3.833 10 N -0.382 5.382 11 C 0.398 3.602 12 O -0.511 6.511 13 N -0.383 5.383 14 C 0.094 3.906 15 H 0.093 0.907 16 C -0.102 4.102 17 C -0.100 4.100 18 C -0.166 4.166 19 C 0.065 3.935 20 F -0.126 7.126 21 C -0.166 4.166 22 C -0.094 4.094 23 C 0.008 3.992 24 H 0.107 0.893 25 C -0.177 4.177 26 C -0.179 4.179 27 C -0.035 4.035 28 O -0.311 6.311 29 H 0.077 0.923 30 H 0.001 0.999 31 H -0.001 1.001 32 H 0.236 0.764 33 H 0.241 0.759 34 H 0.164 0.836 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.491 -24.362 0.168 26.146 hybrid contribution 0.640 0.985 -0.158 1.185 sum 10.131 -23.377 0.010 25.478 Atomic orbital electron populations 1.70157 1.08268 1.28412 1.50155 1.26069 0.95791 1.03858 0.93947 0.85096 0.79046 0.77285 0.77665 1.17678 1.20398 1.20467 1.21639 0.94254 0.90567 1.52596 0.89968 1.18319 0.88017 0.83354 0.93603 1.45283 1.10603 1.04008 1.78348 1.16148 0.85225 0.81262 0.77531 1.90817 1.16307 1.84592 1.59373 1.44859 1.09018 1.04238 1.80164 1.19978 0.95706 0.79182 0.95750 0.90675 1.19782 0.94032 0.97809 0.98548 1.20961 0.91280 0.98644 0.99110 1.21307 1.01963 0.96068 0.97233 1.17990 0.86599 0.93292 0.95646 1.91492 1.65366 1.74593 1.81181 1.21308 0.90697 1.02254 1.02359 1.21028 1.00677 0.93815 0.93923 1.23328 0.94515 0.89897 0.91431 0.89305 1.23140 0.98841 0.95816 0.99890 1.23236 1.00180 0.94896 0.99636 1.23446 0.87481 0.92614 0.99974 1.88577 1.28399 1.38997 1.75084 0.92303 0.99878 1.00088 0.76441 0.75866 0.83634 0.82806 0.82764 0.83555 0.89959 0.87619 0.89313 0.88121 0.90149 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.99 43.17 29.54 68.60 2.03 45.20 16 4 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.55 -30.98 9.28 25.60 0.24 -30.74 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.15 16 9 C 0.29 16.69 5.43 85.63 0.46 17.15 16 10 N -0.73 -32.92 5.55 -482.30 -2.68 -35.60 16 11 C 0.70 30.25 8.04 179.06 1.44 31.69 16 12 O -0.63 -33.13 15.01 8.43 0.13 -33.00 16 13 N -0.73 -21.91 4.90 -461.41 -2.26 -24.17 16 14 C 0.20 5.05 2.00 44.25 0.09 5.14 16 15 H 0.08 2.31 7.23 -2.39 -0.02 2.30 16 16 C -0.10 -1.83 4.55 -19.86 -0.09 -1.92 16 17 C -0.08 -1.25 9.11 22.26 0.20 -1.05 16 18 C -0.15 -2.14 10.03 22.31 0.22 -1.91 16 19 C 0.08 1.37 7.30 22.37 0.16 1.54 16 20 F -0.15 -2.70 17.27 44.97 0.78 -1.92 16 21 C -0.15 -2.14 10.03 22.31 0.22 -1.91 16 22 C -0.08 -1.18 9.33 22.26 0.21 -0.97 16 23 C 0.07 1.60 3.26 31.06 0.10 1.70 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 C -0.14 -2.29 5.91 31.85 0.19 -2.10 16 26 C -0.14 -2.40 7.16 32.05 0.23 -2.17 16 27 C 0.04 1.12 7.78 72.65 0.56 1.68 16 28 O -0.39 -13.13 9.35 -136.55 -1.28 -14.41 16 29 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 30 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 31 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 32 H 0.40 15.08 8.34 -92.71 -0.77 14.30 16 33 H 0.40 9.45 6.90 -92.71 -0.64 8.81 16 34 H 0.15 1.81 6.84 -2.91 -0.02 1.79 16 35 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.15 1.89 8.04 -2.91 -0.02 1.87 16 38 H 0.08 1.29 7.64 -2.39 -0.02 1.28 16 39 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 43 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -78.83 363.02 1.34 -77.50 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -0.37 Total: 26.76 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 4.71 Total: 16.74 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -4.66 Total: -116.87 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -1.15 Total: -47.41 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -78.83 1.34 -77.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.876 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds