Wall clock time and date at job start Tue Mar 31 2020 13:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00463 * 2 1 4 4 H 1.48500 * 109.47236 * 270.00112 * 3 2 1 5 5 H 1.48495 * 109.47191 * 30.00046 * 3 2 1 6 6 H 1.48502 * 109.47020 * 150.00064 * 3 2 1 7 7 C 1.37884 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99864 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99855 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00295 * 179.97438 * 10 9 7 12 12 O 1.21591 * 119.99744 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00545 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00493 * 185.11169 * 13 11 10 15 15 H 1.09006 * 109.47036 * 328.45098 * 14 13 11 16 16 C 1.50704 * 109.47164 * 208.45901 * 14 13 11 17 17 C 1.38251 * 119.97118 * 319.71748 * 16 14 13 18 18 C 1.38195 * 120.02407 * 179.76825 * 17 16 14 19 19 C 1.38466 * 119.97352 * 0.51275 * 18 17 16 20 20 F 1.35096 * 120.02364 * 179.76516 * 19 18 17 21 21 C 1.38455 * 119.94643 * 359.74162 * 19 18 17 22 22 C 1.38194 * 119.97932 * 0.02562 * 21 19 18 23 23 C 1.52991 * 109.47655 * 88.45613 * 14 13 11 24 24 H 1.09010 * 109.86634 * 306.37105 * 23 14 13 25 25 C 1.54097 * 109.88224 * 185.36587 * 23 14 13 26 26 C 1.54807 * 104.30448 * 238.32423 * 25 23 14 27 27 C 1.55222 * 101.99051 * 339.26461 * 26 25 23 28 28 O 1.43742 * 110.00364 * 67.45339 * 23 14 13 29 29 H 0.97002 * 119.99610 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47153 * 60.00229 * 9 7 2 31 31 H 1.09000 * 109.47496 * 299.99692 * 9 7 2 32 32 H 0.97003 * 119.99667 * 0.02562 * 10 9 7 33 33 H 0.96998 * 119.99691 * 5.10946 * 13 11 10 34 34 H 1.07999 * 119.98270 * 0.02638 * 17 16 14 35 35 H 1.08001 * 120.01616 * 180.25344 * 18 17 16 36 36 H 1.08004 * 120.01014 * 180.02562 * 21 19 18 37 37 H 1.07999 * 119.99130 * 180.02562 * 22 21 19 38 38 H 1.08997 * 110.48671 * 357.06873 * 25 23 14 39 39 H 1.08999 * 110.48940 * 119.58513 * 25 23 14 40 40 H 1.09009 * 110.90351 * 97.38406 * 26 25 23 41 41 H 1.08998 * 110.91386 * 220.98496 * 26 25 23 42 42 H 1.09011 * 110.51567 * 278.38109 * 27 26 25 43 43 H 1.08999 * 110.64583 * 155.43576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 3.9997 -2.5755 -0.0010 11 6 5.3247 -2.8219 -0.0020 12 8 6.1149 -1.8978 -0.0025 13 7 5.7739 -4.0926 -0.0024 14 6 7.2095 -4.3621 0.1096 15 1 7.7689 -3.5524 -0.3593 16 6 7.5321 -5.6616 -0.5820 17 6 6.6760 -6.7402 -0.4596 18 6 6.9683 -7.9309 -1.0972 19 6 8.1245 -8.0467 -1.8503 20 9 8.4137 -9.2117 -2.4701 21 6 8.9838 -6.9674 -1.9678 22 6 8.6870 -5.7762 -1.3332 23 6 7.5964 -4.4607 1.5865 24 1 7.2636 -3.5683 2.1169 25 6 9.1243 -4.6099 1.7192 26 6 9.3135 -5.9432 2.4827 27 6 7.9295 -6.1254 3.1614 28 8 7.0002 -5.6293 2.1740 29 1 -0.4850 0.8401 0.0004 30 1 3.8751 -0.6807 0.8889 31 1 3.8745 -0.6803 -0.8911 32 1 3.3692 -3.3127 -0.0010 33 1 5.1466 -4.8287 -0.0768 34 1 5.7763 -6.6509 0.1312 35 1 6.2974 -8.7722 -1.0049 36 1 9.8857 -7.0565 -2.5552 37 1 9.3569 -4.9341 -1.4251 38 1 9.5892 -4.6646 0.7348 39 1 9.5405 -3.7805 2.2910 40 1 9.5184 -6.7613 1.7920 41 1 10.1054 -5.8566 3.2267 42 1 7.8711 -5.5336 4.0750 43 1 7.7402 -7.1780 3.3719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426418558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:57 Heat of formation + Delta-G solvation = -117.037090 kcal Electronic energy + Delta-G solvation = -27310.772087 eV Core-core repulsion = 23269.434990 eV Total energy + Delta-G solvation = -4041.337097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.87899 -41.66105 -40.33838 -39.45661 -36.44795 -35.78578 -34.42254 -33.20945 -32.21318 -31.97768 -30.16149 -29.57532 -26.29466 -24.35569 -23.90295 -23.53038 -22.41974 -21.92892 -21.31233 -20.03170 -18.75625 -18.33420 -17.99065 -17.28658 -17.20860 -16.94762 -16.56766 -16.37019 -16.33490 -16.12686 -15.73607 -15.33379 -15.01941 -14.62832 -14.48019 -14.42805 -14.35684 -14.29569 -14.12432 -13.65146 -13.05284 -13.00500 -12.76880 -12.68752 -12.56054 -12.43748 -11.99954 -11.91086 -11.89359 -11.63899 -11.58005 -11.29279 -10.90112 -10.76449 -10.25061 -10.02374 -9.70309 -9.54072 -8.38161 -6.44992 0.10604 0.30600 1.35239 1.36771 1.50285 1.81471 2.19570 2.30494 2.62172 2.95521 2.97543 3.27989 3.43960 3.48872 3.72087 3.78251 3.87993 3.99176 4.00814 4.18251 4.29479 4.35044 4.43430 4.57175 4.64386 4.77842 4.83172 4.87932 4.95999 4.98589 5.00493 5.07696 5.08663 5.17666 5.21270 5.26343 5.27995 5.38697 5.55853 5.60892 5.90473 5.93926 6.02662 6.28095 6.57130 7.14523 7.24790 7.65376 8.76706 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.003072 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.840580 B = 9113.644999 C = 9908.996066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.253 3.747 10 N -0.722 5.722 11 C 0.699 3.301 12 O -0.639 6.639 13 N -0.727 5.727 14 C 0.209 3.791 15 H 0.101 0.899 16 C -0.095 4.095 17 C -0.065 4.065 18 C -0.155 4.155 19 C 0.083 3.917 20 F -0.149 7.149 21 C -0.150 4.150 22 C -0.079 4.079 23 C 0.071 3.929 24 H 0.047 0.953 25 C -0.148 4.148 26 C -0.141 4.141 27 C 0.038 3.962 28 O -0.379 6.379 29 H 0.272 0.728 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.403 0.597 33 H 0.406 0.594 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.445 -17.853 1.635 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.375 5.375 11 C 0.399 3.601 12 O -0.521 6.521 13 N -0.383 5.383 14 C 0.103 3.897 15 H 0.118 0.882 16 C -0.096 4.096 17 C -0.083 4.083 18 C -0.173 4.173 19 C 0.064 3.936 20 F -0.128 7.128 21 C -0.169 4.169 22 C -0.097 4.097 23 C 0.011 3.989 24 H 0.065 0.935 25 C -0.186 4.186 26 C -0.179 4.179 27 C -0.038 4.038 28 O -0.298 6.298 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.238 0.762 33 H 0.243 0.757 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.173 0.827 37 H 0.170 0.830 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 22.763 -17.015 1.570 28.463 hybrid contribution -0.701 0.130 0.001 0.713 sum 22.062 -16.885 1.571 27.826 Atomic orbital electron populations 1.69987 1.07729 1.28608 1.50789 1.25600 0.95547 1.02715 0.93569 0.85834 0.79276 0.79149 0.79496 1.18919 1.19865 1.18318 1.21287 0.89986 0.94545 1.52575 0.92443 1.18943 0.92941 0.79706 0.95562 1.45134 1.04677 1.09949 1.77765 1.16145 0.82733 0.83670 0.77597 1.90823 1.55964 1.44707 1.60632 1.45009 1.08428 1.05383 1.79440 1.19881 0.80880 0.95162 0.93733 0.88158 1.19732 0.96491 0.94514 0.98874 1.20843 0.99445 0.91251 0.96778 1.21270 0.97086 0.99889 0.99079 1.17961 0.96543 0.82324 0.96793 1.91479 1.93523 1.46786 1.80982 1.21275 1.01032 0.92016 1.02535 1.21055 0.96160 0.97861 0.94659 1.23097 0.94092 0.88820 0.92871 0.93500 1.22979 0.93455 0.99147 1.03006 1.23087 0.97878 0.96918 1.00012 1.23759 0.88128 1.00445 0.91483 1.88856 1.43410 1.42967 1.54588 0.91859 0.97122 0.97121 0.76162 0.75676 0.84671 0.83519 0.82747 0.83034 0.89028 0.89973 0.90296 0.88566 0.92369 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.96 21.45 0.30 -55.79 16 2 C 0.03 1.47 5.47 84.66 0.46 1.94 16 3 Si 0.94 44.31 27.47 68.60 1.88 46.20 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -12.11 6.54 99.48 0.65 -11.45 16 7 C -0.55 -30.53 9.83 25.60 0.25 -30.28 16 8 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 9 C 0.25 12.62 4.50 85.63 0.38 13.01 16 10 N -0.72 -29.89 5.55 -482.31 -2.68 -32.57 16 11 C 0.70 27.06 8.55 179.06 1.53 28.59 16 12 O -0.64 -29.21 15.92 -4.00 -0.06 -29.27 16 13 N -0.73 -20.60 4.99 -461.42 -2.30 -22.90 16 14 C 0.21 4.95 2.06 44.24 0.09 5.04 16 15 H 0.10 2.61 7.26 -2.38 -0.02 2.60 16 16 C -0.10 -1.79 4.36 -19.86 -0.09 -1.88 16 17 C -0.06 -1.18 8.03 22.26 0.18 -1.00 16 18 C -0.15 -2.63 10.03 22.31 0.22 -2.41 16 19 C 0.08 1.47 7.30 22.38 0.16 1.63 16 20 F -0.15 -2.90 17.27 44.97 0.78 -2.13 16 21 C -0.15 -2.24 10.03 22.31 0.22 -2.02 16 22 C -0.08 -1.22 8.49 22.26 0.19 -1.03 16 23 C 0.07 1.60 3.34 30.96 0.10 1.70 16 24 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 25 C -0.15 -2.33 6.28 31.58 0.20 -2.13 16 26 C -0.14 -1.78 7.17 31.97 0.23 -1.55 16 27 C 0.04 0.60 7.72 72.74 0.56 1.16 16 28 O -0.38 -8.32 9.55 -148.98 -1.42 -9.74 16 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 31 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 32 H 0.40 14.82 8.34 -92.71 -0.77 14.04 16 33 H 0.41 9.76 6.91 -92.71 -0.64 9.12 16 34 H 0.14 2.41 6.66 -2.91 -0.02 2.39 16 35 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.15 1.74 7.68 -2.91 -0.02 1.71 16 38 H 0.09 1.23 5.94 -2.39 -0.01 1.21 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -70.46 357.32 0.79 -69.67 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.41 Total: 25.75 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 4.71 Total: 10.79 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.68 Total: -111.27 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.49 Total: -39.02 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.20 kcal Total: -70.46 0.79 -69.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.364 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds