Wall clock time and date at job start Tue Mar 31 2020 13:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48503 * 109.47241 * 270.00192 * 3 2 1 5 5 H 1.48505 * 109.47039 * 30.00062 * 3 2 1 6 6 H 1.48494 * 109.47113 * 149.99907 * 3 2 1 7 7 C 1.37877 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00064 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99838 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47123 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00341 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00123 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00138 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99804 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.47380 * 325.00044 * 14 13 11 16 16 C 1.50706 * 109.46813 * 205.00296 * 14 13 11 17 17 C 1.38244 * 119.97008 * 140.00116 * 16 14 13 18 18 C 1.38205 * 120.02263 * 179.97438 * 17 16 14 19 19 C 1.38459 * 119.97412 * 0.28333 * 18 17 16 20 20 F 1.35099 * 120.02759 * 179.72396 * 19 18 17 21 21 C 1.38466 * 119.94836 * 359.48301 * 19 18 17 22 22 C 1.38195 * 119.97197 * 0.49199 * 21 19 18 23 23 C 1.52996 * 109.46842 * 85.00669 * 14 13 11 24 24 H 1.09005 * 110.27028 * 185.63666 * 23 14 13 25 25 C 1.54942 * 110.30782 * 307.82967 * 23 14 13 26 26 C 1.55310 * 100.94272 * 155.36519 * 25 23 14 27 27 C 1.54386 * 102.24834 * 325.86779 * 26 25 23 28 28 O 1.43236 * 107.59149 * 21.35670 * 27 26 25 29 29 H 0.97001 * 120.00537 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47480 * 59.99475 * 9 7 2 31 31 H 1.09006 * 109.46664 * 299.98969 * 9 7 2 32 32 H 0.97006 * 119.99960 * 359.97438 * 10 9 7 33 33 H 0.96998 * 119.99916 * 0.02562 * 13 11 10 34 34 H 1.07999 * 119.98932 * 359.97438 * 17 16 14 35 35 H 1.08002 * 120.00949 * 179.97438 * 18 17 16 36 36 H 1.07997 * 120.00962 * 180.25357 * 21 19 18 37 37 H 1.08000 * 119.98534 * 179.78274 * 22 21 19 38 38 H 1.09005 * 111.12603 * 273.28235 * 25 23 14 39 39 H 1.08994 * 111.12602 * 37.44379 * 25 23 14 40 40 H 1.08997 * 110.85143 * 207.67955 * 26 25 23 41 41 H 1.09003 * 110.85009 * 84.05707 * 26 25 23 42 42 H 1.08998 * 109.82881 * 261.84253 * 27 26 25 43 43 H 1.08999 * 109.83108 * 140.87491 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 5.3250 -2.8214 -0.0001 12 8 6.1151 -1.8973 -0.0006 13 7 5.7742 -4.0921 0.0003 14 6 7.2146 -4.3597 -0.0004 15 1 7.7253 -3.5988 -0.5904 16 6 7.4729 -5.7179 -0.6004 17 6 8.5514 -5.9062 -1.4445 18 6 8.7896 -7.1513 -1.9949 19 6 7.9441 -8.2089 -1.7053 20 9 8.1727 -9.4252 -2.2471 21 6 6.8670 -8.0202 -0.8558 22 6 6.6312 -6.7743 -0.3062 23 6 7.7397 -4.3287 1.4364 24 1 8.8252 -4.4272 1.4439 25 6 7.3118 -3.0147 2.1370 26 6 7.3457 -3.4506 3.6273 27 6 6.8982 -4.9260 3.5472 28 8 7.1384 -5.3792 2.2098 29 1 -0.4851 0.8400 -0.0004 30 1 3.8745 -0.6807 0.8904 31 1 3.8751 -0.6796 -0.8896 32 1 3.3696 -3.3125 -0.0001 33 1 5.1439 -4.8294 0.0002 34 1 9.2081 -5.0800 -1.6738 35 1 9.6320 -7.2981 -2.6546 36 1 6.2093 -8.8454 -0.6260 37 1 5.7891 -6.6261 0.3535 38 1 8.0281 -2.2158 1.9450 39 1 6.3066 -2.7188 1.8370 40 1 6.6433 -2.8638 4.2192 41 1 8.3550 -3.3727 4.0314 42 1 5.8359 -5.0033 3.7787 43 1 7.4757 -5.5262 4.2503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:00 Heat of formation + Delta-G solvation = -88.518582 kcal Electronic energy + Delta-G solvation = -27464.257646 eV Core-core repulsion = 23424.157205 eV Total energy + Delta-G solvation = -4040.100441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.07402 -40.67068 -38.96329 -38.67755 -35.08104 -34.17417 -32.45632 -32.02387 -31.47097 -31.00289 -29.31479 -27.72229 -25.44053 -23.39982 -22.35692 -22.24669 -21.48768 -20.69207 -20.09105 -18.45793 -17.82468 -17.19353 -16.57455 -16.43152 -16.25172 -15.82586 -15.75405 -15.29259 -14.82794 -14.59554 -14.38202 -14.24942 -13.75101 -13.67300 -13.40679 -13.14902 -13.12458 -12.83999 -12.64907 -12.37509 -12.19985 -11.93580 -11.68127 -11.27771 -11.16835 -11.03174 -11.00507 -10.82331 -10.57312 -9.98768 -9.73597 -9.61470 -9.47422 -9.30127 -8.91575 -8.78403 -8.67549 -8.05656 -6.22108 -4.24198 0.89844 1.04181 3.11046 3.26241 3.33246 3.40638 3.42764 3.65966 3.80617 4.05501 4.32430 4.38480 4.52183 4.56769 4.67925 4.88962 4.89404 4.95628 5.06337 5.11141 5.13489 5.20165 5.25910 5.41654 5.49926 5.67407 5.71866 5.74616 5.80252 5.87601 5.90869 6.03240 6.08634 6.26130 6.41083 6.66274 6.70335 6.70998 6.98286 7.08827 7.20851 7.37159 7.53869 8.26003 8.65209 8.78999 9.13951 9.38727 10.89890 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.003303 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.268306 B = 8475.073365 C = 9447.876375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.240 3.760 10 N -0.722 5.722 11 C 0.697 3.303 12 O -0.600 6.600 13 N -0.743 5.743 14 C 0.211 3.789 15 H 0.109 0.891 16 C -0.094 4.094 17 C -0.080 4.080 18 C -0.155 4.155 19 C 0.095 3.905 20 F -0.143 7.143 21 C -0.153 4.153 22 C -0.060 4.060 23 C 0.074 3.926 24 H 0.074 0.926 25 C -0.147 4.147 26 C -0.159 4.159 27 C 0.054 3.946 28 O -0.373 6.373 29 H 0.267 0.733 30 H 0.023 0.977 31 H 0.019 0.981 32 H 0.393 0.607 33 H 0.395 0.605 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.666 -14.542 2.143 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.117 3.883 10 N -0.373 5.373 11 C 0.397 3.603 12 O -0.480 6.480 13 N -0.400 5.400 14 C 0.105 3.895 15 H 0.127 0.873 16 C -0.095 4.095 17 C -0.098 4.098 18 C -0.174 4.174 19 C 0.076 3.924 20 F -0.122 7.122 21 C -0.172 4.172 22 C -0.079 4.079 23 C 0.015 3.985 24 H 0.092 0.908 25 C -0.185 4.185 26 C -0.197 4.197 27 C -0.023 4.023 28 O -0.293 6.293 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.226 0.774 33 H 0.230 0.770 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.135 -13.760 2.048 22.857 hybrid contribution -0.183 0.122 0.064 0.229 sum 17.952 -13.638 2.112 22.644 Atomic orbital electron populations 1.69878 1.06224 1.27419 1.49490 1.24782 0.94774 0.99145 0.93914 0.86816 0.80559 0.83237 0.79049 1.19866 1.20978 1.18458 1.21093 0.88586 0.95181 1.53219 0.90307 1.19353 0.94828 0.77518 0.96603 1.45430 1.03703 1.11129 1.77074 1.16016 0.83630 0.82648 0.77988 1.90880 1.55143 1.43138 1.58851 1.45161 1.06456 1.06852 1.81553 1.19694 0.82249 0.93388 0.94216 0.87338 1.19896 0.96278 0.95371 0.97929 1.20869 0.96921 0.96691 0.95356 1.21072 1.00734 0.92470 1.03079 1.17757 0.97034 0.80647 0.96990 1.91492 1.94359 1.41970 1.84343 1.21142 0.98006 0.99042 0.98992 1.20823 0.98965 0.90999 0.97092 1.23427 0.96583 0.87274 0.91209 0.90839 1.23503 1.05449 0.96776 0.92754 1.23151 1.01994 0.96194 0.98343 1.23050 1.00514 0.94231 0.84487 1.88375 1.82205 1.36941 1.21769 0.92267 0.95943 0.96334 0.77418 0.77029 0.84784 0.84752 0.84722 0.84648 0.90017 0.88114 0.90195 0.91135 0.91495 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.54 -14.63 9.83 -34.44 -0.34 -14.96 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 C 0.24 5.74 4.50 -5.19 -0.02 5.71 16 10 N -0.72 -14.11 5.55 -66.41 -0.37 -14.48 16 11 C 0.70 12.56 6.63 -86.92 -0.58 11.98 16 12 O -0.60 -12.55 13.88 5.29 0.07 -12.48 16 13 N -0.74 -10.07 4.80 -59.81 -0.29 -10.36 16 14 C 0.21 2.53 2.44 -69.08 -0.17 2.36 16 15 H 0.11 1.38 7.44 -51.93 -0.39 1.00 16 16 C -0.09 -0.99 4.85 -104.61 -0.51 -1.49 16 17 C -0.08 -0.74 9.67 -39.59 -0.38 -1.13 16 18 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 19 C 0.09 0.98 7.30 -39.42 -0.29 0.70 16 20 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 21 C -0.15 -1.50 10.03 -39.51 -0.40 -1.90 16 22 C -0.06 -0.61 8.11 -39.59 -0.32 -0.93 16 23 C 0.07 0.87 3.31 -25.71 -0.09 0.78 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 C -0.15 -1.97 5.41 -24.48 -0.13 -2.10 16 26 C -0.16 -1.75 7.02 -24.78 -0.17 -1.92 16 27 C 0.05 0.58 7.79 37.88 0.30 0.87 16 28 O -0.37 -4.46 9.57 -35.23 -0.34 -4.79 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 30 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 31 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 32 H 0.39 6.85 8.34 -40.82 -0.34 6.51 16 33 H 0.39 4.63 6.88 -40.82 -0.28 4.35 16 34 H 0.13 0.99 8.04 -52.49 -0.42 0.56 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.29 6.70 -52.49 -0.35 0.94 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.10 1.67 4.32 -51.93 -0.22 1.45 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 353.24 15.07 5.32 5.32 Total: -1.00 -31.27 353.24 -8.78 -40.05 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.73 Total: 9.09 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -3.59 Total: -1.80 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.12 Total: -50.32 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.26 Total: -17.27 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.27 -8.78 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.473 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds