Wall clock time and date at job start Tue Mar 31 2020 13:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48503 * 109.47241 * 270.00192 * 3 2 1 5 5 H 1.48505 * 109.47039 * 30.00062 * 3 2 1 6 6 H 1.48494 * 109.47113 * 149.99907 * 3 2 1 7 7 C 1.37877 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00064 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99838 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47123 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00341 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00123 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00138 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99804 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.47380 * 325.00044 * 14 13 11 16 16 C 1.50706 * 109.46813 * 205.00296 * 14 13 11 17 17 C 1.38244 * 119.97008 * 140.00116 * 16 14 13 18 18 C 1.38205 * 120.02263 * 179.97438 * 17 16 14 19 19 C 1.38459 * 119.97412 * 0.28333 * 18 17 16 20 20 F 1.35099 * 120.02759 * 179.72396 * 19 18 17 21 21 C 1.38466 * 119.94836 * 359.48301 * 19 18 17 22 22 C 1.38195 * 119.97197 * 0.49199 * 21 19 18 23 23 C 1.52996 * 109.46842 * 85.00669 * 14 13 11 24 24 H 1.09005 * 110.27028 * 185.63666 * 23 14 13 25 25 C 1.54942 * 110.30782 * 307.82967 * 23 14 13 26 26 C 1.55310 * 100.94272 * 155.36519 * 25 23 14 27 27 C 1.54386 * 102.24834 * 325.86779 * 26 25 23 28 28 O 1.43236 * 107.59149 * 21.35670 * 27 26 25 29 29 H 0.97001 * 120.00537 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47480 * 59.99475 * 9 7 2 31 31 H 1.09006 * 109.46664 * 299.98969 * 9 7 2 32 32 H 0.97006 * 119.99960 * 359.97438 * 10 9 7 33 33 H 0.96998 * 119.99916 * 0.02562 * 13 11 10 34 34 H 1.07999 * 119.98932 * 359.97438 * 17 16 14 35 35 H 1.08002 * 120.00949 * 179.97438 * 18 17 16 36 36 H 1.07997 * 120.00962 * 180.25357 * 21 19 18 37 37 H 1.08000 * 119.98534 * 179.78274 * 22 21 19 38 38 H 1.09005 * 111.12603 * 273.28235 * 25 23 14 39 39 H 1.08994 * 111.12602 * 37.44379 * 25 23 14 40 40 H 1.08997 * 110.85143 * 207.67955 * 26 25 23 41 41 H 1.09003 * 110.85009 * 84.05707 * 26 25 23 42 42 H 1.08998 * 109.82881 * 261.84253 * 27 26 25 43 43 H 1.08999 * 109.83108 * 140.87491 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 5.3250 -2.8214 -0.0001 12 8 6.1151 -1.8973 -0.0006 13 7 5.7742 -4.0921 0.0003 14 6 7.2146 -4.3597 -0.0004 15 1 7.7253 -3.5988 -0.5904 16 6 7.4729 -5.7179 -0.6004 17 6 8.5514 -5.9062 -1.4445 18 6 8.7896 -7.1513 -1.9949 19 6 7.9441 -8.2089 -1.7053 20 9 8.1727 -9.4252 -2.2471 21 6 6.8670 -8.0202 -0.8558 22 6 6.6312 -6.7743 -0.3062 23 6 7.7397 -4.3287 1.4364 24 1 8.8252 -4.4272 1.4439 25 6 7.3118 -3.0147 2.1370 26 6 7.3457 -3.4506 3.6273 27 6 6.8982 -4.9260 3.5472 28 8 7.1384 -5.3792 2.2098 29 1 -0.4851 0.8400 -0.0004 30 1 3.8745 -0.6807 0.8904 31 1 3.8751 -0.6796 -0.8896 32 1 3.3696 -3.3125 -0.0001 33 1 5.1439 -4.8294 0.0002 34 1 9.2081 -5.0800 -1.6738 35 1 9.6320 -7.2981 -2.6546 36 1 6.2093 -8.8454 -0.6260 37 1 5.7891 -6.6261 0.3535 38 1 8.0281 -2.2158 1.9450 39 1 6.3066 -2.7188 1.8370 40 1 6.6433 -2.8638 4.2192 41 1 8.3550 -3.3727 4.0314 42 1 5.8359 -5.0033 3.7787 43 1 7.4757 -5.5262 4.2503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426418559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:00 Heat of formation + Delta-G solvation = -109.401464 kcal Electronic energy + Delta-G solvation = -27465.163196 eV Core-core repulsion = 23424.157205 eV Total energy + Delta-G solvation = -4041.005991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.87948 -41.77502 -40.08284 -39.62019 -36.42279 -35.73686 -34.40840 -32.96512 -32.42083 -31.96354 -30.22905 -29.51589 -26.45699 -24.37140 -23.88749 -23.18652 -22.40665 -22.02325 -21.25676 -19.95295 -18.72659 -18.31712 -18.15652 -17.65306 -17.09740 -16.90374 -16.56212 -16.44020 -16.27005 -16.03006 -15.61692 -15.26398 -14.98248 -14.63127 -14.47185 -14.43622 -14.29481 -14.19895 -13.90158 -13.62316 -13.37986 -13.03442 -12.85975 -12.68542 -12.60481 -12.14886 -11.99487 -11.90594 -11.90464 -11.63596 -11.59887 -11.19686 -10.89049 -10.62974 -10.12240 -10.02610 -9.68147 -9.49864 -8.37476 -6.44154 0.10860 0.31442 1.35465 1.37331 1.50070 1.85482 2.24593 2.30621 2.62716 2.84298 2.98534 3.29023 3.47138 3.51594 3.66522 3.79698 3.96933 4.01833 4.06746 4.25782 4.30058 4.35392 4.39319 4.49095 4.59208 4.79745 4.84196 4.89498 4.97561 4.99532 5.00923 5.10105 5.11061 5.18033 5.26835 5.28122 5.34143 5.41159 5.59901 5.64329 5.91473 5.97403 6.10053 6.30231 6.58505 7.16338 7.27257 7.70068 8.77391 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.003303 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.268306 B = 8475.073365 C = 9447.876375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.255 3.745 10 N -0.725 5.725 11 C 0.701 3.299 12 O -0.627 6.627 13 N -0.725 5.725 14 C 0.211 3.789 15 H 0.103 0.897 16 C -0.101 4.101 17 C -0.079 4.079 18 C -0.153 4.153 19 C 0.081 3.919 20 F -0.149 7.149 21 C -0.156 4.156 22 C -0.066 4.066 23 C 0.080 3.920 24 H 0.093 0.907 25 C -0.152 4.152 26 C -0.153 4.153 27 C 0.051 3.949 28 O -0.380 6.380 29 H 0.272 0.728 30 H 0.012 0.988 31 H 0.010 0.990 32 H 0.402 0.598 33 H 0.405 0.595 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.669 -15.135 2.271 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.583 4.583 8 H 0.075 0.925 9 C 0.131 3.869 10 N -0.378 5.378 11 C 0.402 3.598 12 O -0.510 6.510 13 N -0.382 5.382 14 C 0.106 3.894 15 H 0.121 0.879 16 C -0.102 4.102 17 C -0.097 4.097 18 C -0.172 4.172 19 C 0.062 3.938 20 F -0.128 7.128 21 C -0.175 4.175 22 C -0.084 4.084 23 C 0.021 3.979 24 H 0.110 0.890 25 C -0.190 4.190 26 C -0.191 4.191 27 C -0.025 4.025 28 O -0.299 6.299 29 H 0.081 0.919 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.237 0.763 33 H 0.242 0.758 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 20.154 -14.418 2.178 24.875 hybrid contribution -0.794 0.194 0.029 0.818 sum 19.360 -14.223 2.207 24.124 Atomic orbital electron populations 1.69986 1.07767 1.28567 1.50896 1.25596 0.95512 1.02701 0.93640 0.85842 0.79335 0.79192 0.79418 1.19080 1.20062 1.18111 1.21300 0.90139 0.94438 1.52410 0.92528 1.18907 0.92761 0.79726 0.95532 1.45154 1.04788 1.09842 1.77987 1.15993 0.82637 0.83674 0.77522 1.90857 1.55600 1.44500 1.60010 1.45008 1.07703 1.05451 1.80007 1.19788 0.80682 0.94208 0.94751 0.87948 1.19812 0.97198 0.94438 0.98743 1.21093 0.96683 0.97377 0.94560 1.21308 1.00969 0.91977 1.02896 1.17998 0.97630 0.80771 0.97410 1.91477 1.94433 1.42397 1.84483 1.21292 0.98138 0.99331 0.98729 1.20871 0.99111 0.91097 0.97319 1.23398 0.97505 0.86332 0.90669 0.88951 1.23406 1.03276 0.97534 0.94807 1.23137 1.03073 0.96204 0.96692 1.23149 1.00743 0.94282 0.84324 1.88364 1.82380 1.36883 1.22321 0.91919 0.97021 0.97224 0.76334 0.75821 0.82790 0.82777 0.83474 0.84398 0.90608 0.91438 0.90630 0.89207 0.91894 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 2 C 0.03 1.43 5.47 84.65 0.46 1.90 16 3 Si 0.94 43.56 27.47 68.60 1.88 45.45 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -11.71 6.54 99.48 0.65 -11.06 16 7 C -0.54 -29.78 9.83 25.60 0.25 -29.53 16 8 H 0.06 3.27 7.84 -2.91 -0.02 3.25 16 9 C 0.26 12.26 4.50 85.63 0.38 12.65 16 10 N -0.72 -28.42 5.55 -482.30 -2.68 -31.09 16 11 C 0.70 25.10 6.63 179.06 1.19 26.29 16 12 O -0.63 -26.20 13.88 -3.99 -0.06 -26.26 16 13 N -0.73 -19.06 4.80 -461.41 -2.21 -21.27 16 14 C 0.21 4.76 2.44 44.25 0.11 4.87 16 15 H 0.10 2.48 7.44 -2.39 -0.02 2.46 16 16 C -0.10 -1.93 4.85 -19.86 -0.10 -2.02 16 17 C -0.08 -1.27 9.67 22.26 0.22 -1.06 16 18 C -0.15 -2.47 10.03 22.31 0.22 -2.24 16 19 C 0.08 1.53 7.30 22.38 0.16 1.70 16 20 F -0.15 -3.07 17.27 44.97 0.78 -2.29 16 21 C -0.16 -2.80 10.03 22.31 0.22 -2.58 16 22 C -0.07 -1.22 8.11 22.26 0.18 -1.04 16 23 C 0.08 1.73 3.31 31.26 0.10 1.84 16 24 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 25 C -0.15 -3.95 5.41 32.05 0.17 -3.78 16 26 C -0.15 -3.13 7.02 31.86 0.22 -2.91 16 27 C 0.05 1.00 7.79 72.45 0.56 1.57 16 28 O -0.38 -8.32 9.57 -148.98 -1.43 -9.74 16 29 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 31 H 0.01 0.49 7.57 -2.38 -0.02 0.47 16 32 H 0.40 14.09 8.34 -92.70 -0.77 13.32 16 33 H 0.41 9.10 6.88 -92.71 -0.64 8.46 16 34 H 0.15 1.82 8.04 -2.91 -0.02 1.80 16 35 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.14 2.42 6.70 -2.91 -0.02 2.40 16 38 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.07 2.23 4.32 -2.39 -0.01 2.22 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -66.81 353.24 0.55 -66.26 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: -0.41 Total: 28.54 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 4.37 Total: 5.64 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -4.59 Total: -107.60 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -1.48 Total: -36.00 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.45 kcal Total: -66.81 0.55 -66.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.144 kcal (2) G-P(sol) polarization free energy of solvation -66.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds