Wall clock time and date at job start Tue Mar 31 2020 13:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86795 * 120.00306 * 2 1 4 4 H 1.48498 * 109.47216 * 269.99742 * 3 2 1 5 5 H 1.48502 * 109.47160 * 29.99846 * 3 2 1 6 6 H 1.48506 * 109.47238 * 149.99900 * 3 2 1 7 7 C 1.37884 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99869 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47102 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99844 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00443 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99527 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99980 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47323 * 184.99150 * 14 13 11 16 16 C 1.52993 * 115.54868 * 65.52790 * 15 14 13 17 17 O 1.42904 * 109.47191 * 29.60970 * 16 15 14 18 18 C 1.52997 * 117.49506 * 211.20225 * 15 14 13 19 19 C 1.52997 * 117.51338 * 279.82925 * 15 14 13 20 20 H 1.09007 * 117.49828 * 145.03097 * 19 15 14 21 21 C 1.50702 * 117.50401 * 0.02562 * 19 15 14 22 22 C 1.38240 * 119.96955 * 299.72781 * 21 19 15 23 23 C 1.38200 * 120.02294 * 179.72490 * 22 21 19 24 24 C 1.38470 * 119.97228 * 0.56904 * 23 22 21 25 25 F 1.35099 * 120.02435 * 179.68044 * 24 23 22 26 26 C 1.38454 * 119.94668 * 359.70301 * 24 23 22 27 27 C 1.38200 * 119.97368 * 0.02562 * 26 24 23 28 28 H 0.97004 * 119.99950 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47518 * 59.99705 * 9 7 2 30 30 H 1.09004 * 109.47268 * 299.99209 * 9 7 2 31 31 H 0.97000 * 119.99538 * 359.97438 * 10 9 7 32 32 H 0.97005 * 120.00642 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47147 * 64.98551 * 14 13 11 34 34 H 1.08997 * 109.47119 * 304.99072 * 14 13 11 35 35 H 1.08997 * 109.47584 * 269.60576 * 16 15 14 36 36 H 1.09004 * 109.46801 * 149.60570 * 16 15 14 37 37 H 0.96703 * 113.99448 * 179.97438 * 17 16 15 38 38 H 1.09006 * 117.49637 * 214.99955 * 18 15 14 39 39 H 1.09001 * 117.50582 * 0.02562 * 18 15 14 40 40 H 1.07994 * 119.99264 * 359.97438 * 22 21 19 41 41 H 1.08000 * 120.01877 * 180.29921 * 23 22 21 42 42 H 1.08003 * 120.01567 * 179.97438 * 26 24 23 43 43 H 1.08007 * 119.98579 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5580 -5.1055 0.0000 13 7 2.6292 -5.9078 0.0005 14 6 2.1409 -7.2890 0.0005 15 6 3.3256 -8.2490 0.1267 16 6 4.0917 -8.1813 1.4493 17 8 3.2024 -7.7844 2.4951 18 6 3.2023 -9.6159 -0.5493 19 6 4.1285 -8.5511 -1.1402 20 1 5.2026 -8.7018 -1.0314 21 6 3.6924 -7.8800 -2.4171 22 6 2.4232 -8.1049 -2.9168 23 6 2.0201 -7.4856 -4.0847 24 6 2.8922 -6.6489 -4.7606 25 9 2.5014 -6.0480 -5.9058 26 6 4.1650 -6.4289 -4.2620 27 6 4.5638 -7.0449 -3.0910 28 1 -0.4850 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8904 31 1 3.1565 -3.4355 0.0002 32 1 3.5830 -5.7307 0.0009 33 1 1.6105 -7.4869 -0.9309 34 1 1.4638 -7.4350 0.8422 35 1 4.8999 -7.4549 1.3644 36 1 4.5076 -9.1624 1.6788 37 1 3.6212 -7.7209 3.3645 38 1 3.6670 -10.4672 -0.0517 39 1 2.2773 -9.8313 -1.0843 40 1 1.7450 -8.7615 -2.3923 41 1 1.0269 -7.6575 -4.4724 42 1 4.8462 -5.7768 -4.7885 43 1 5.5568 -6.8738 -2.7021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:31 Heat of formation + Delta-G solvation = -75.243440 kcal Electronic energy + Delta-G solvation = -27212.455370 eV Core-core repulsion = 23172.930582 eV Total energy + Delta-G solvation = -4039.524788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.89614 -40.47600 -38.85182 -37.96194 -36.07322 -34.14117 -33.48252 -32.15313 -31.31282 -30.56417 -27.82537 -26.84764 -25.73984 -24.05530 -22.95951 -22.36204 -21.01957 -19.96757 -19.43271 -18.00947 -17.69272 -17.54792 -16.68912 -16.13758 -15.73591 -15.60138 -15.34922 -15.24882 -15.02059 -14.58987 -14.44122 -14.32360 -13.73194 -13.54168 -13.31775 -13.14166 -13.05519 -12.69879 -12.64673 -12.32794 -11.88978 -11.81292 -11.60254 -11.20401 -11.00535 -10.89288 -10.82483 -10.74773 -10.61841 -10.23692 -9.96143 -9.29503 -9.23740 -9.21189 -8.65926 -8.51898 -8.46506 -7.61177 -6.08769 -4.14756 0.97651 1.12307 3.06797 3.28620 3.33998 3.36494 3.48109 3.78985 3.88675 4.14493 4.19913 4.35914 4.38434 4.43311 4.56952 4.71398 4.72312 4.78157 4.92081 5.07028 5.08640 5.25101 5.27194 5.31552 5.38190 5.40484 5.61856 5.67207 5.75661 5.89563 6.00590 6.03597 6.11326 6.19757 6.34398 6.77021 7.06098 7.25251 7.47889 7.62601 7.67368 7.67504 8.01984 8.15567 8.85554 9.08830 9.44851 9.61193 11.01621 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.003874 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.042794 B = 7225.170295 C = 9019.830814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.269 3.731 10 N -0.731 5.731 11 C 0.696 3.304 12 O -0.604 6.604 13 N -0.744 5.744 14 C 0.185 3.815 15 C -0.126 4.126 16 C 0.116 3.884 17 O -0.558 6.558 18 C -0.154 4.154 19 C -0.100 4.100 20 H 0.117 0.883 21 C -0.060 4.060 22 C -0.085 4.085 23 C -0.147 4.147 24 C 0.097 3.903 25 F -0.141 7.141 26 C -0.149 4.149 27 C -0.082 4.082 28 H 0.265 0.735 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.384 0.616 32 H 0.387 0.613 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.379 0.621 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.458 -21.676 -2.801 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.383 5.383 11 C 0.395 3.605 12 O -0.483 6.483 13 N -0.400 5.400 14 C 0.060 3.940 15 C -0.126 4.126 16 C 0.038 3.962 17 O -0.363 6.363 18 C -0.191 4.191 19 C -0.118 4.118 20 H 0.135 0.865 21 C -0.060 4.060 22 C -0.103 4.103 23 C -0.165 4.165 24 C 0.078 3.922 25 F -0.119 7.119 26 C -0.168 4.168 27 C -0.100 4.100 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.216 0.784 32 H 0.219 0.781 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.226 0.774 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.684 -21.676 -3.336 24.849 hybrid contribution 1.684 1.267 0.211 2.118 sum 13.368 -20.408 -3.125 24.596 Atomic orbital electron populations 1.69983 1.06075 1.27138 1.49127 1.24938 0.94888 0.99320 0.94879 0.86434 0.79594 0.82811 0.78148 1.20529 1.21043 1.19828 1.21232 0.93196 0.90516 1.52838 0.92066 1.18930 0.87796 0.81107 0.97447 1.45661 1.10518 1.04502 1.77661 1.16090 0.85163 0.80970 0.78244 1.90857 1.14344 1.84266 1.58838 1.44863 1.08359 1.04759 1.82038 1.20415 0.92941 0.78819 1.01834 1.21802 1.00009 0.98879 0.91950 1.21519 0.90739 0.98079 0.85842 1.86594 1.38702 1.91635 1.19380 1.23318 1.01646 0.91681 1.02489 1.21172 0.98006 1.02032 0.90626 0.86458 1.18994 0.94101 0.97971 0.94944 1.20898 0.95636 0.99054 0.94713 1.21131 1.00141 0.98563 0.96706 1.17743 0.94152 0.95972 0.84301 1.91505 1.91341 1.81804 1.47265 1.21107 0.95300 1.02330 0.98079 1.20732 0.99735 0.95621 0.93945 0.92540 0.95943 0.95862 0.78444 0.78119 0.92092 0.90538 0.93235 0.93416 0.77418 0.87738 0.87791 0.84943 0.84720 0.84737 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.28 55.43 0.74 -26.08 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.12 9.28 -34.44 -0.32 -15.44 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 9 C 0.27 7.50 5.43 -5.19 -0.03 7.47 16 10 N -0.73 -16.51 5.55 -66.41 -0.37 -16.88 16 11 C 0.70 15.24 8.57 -86.92 -0.74 14.49 16 12 O -0.60 -15.99 16.34 5.29 0.09 -15.90 16 13 N -0.74 -11.83 5.48 -65.22 -0.36 -12.19 16 14 C 0.18 2.59 4.42 -4.04 -0.02 2.57 16 15 C -0.13 -1.18 2.04 -154.51 -0.32 -1.49 16 16 C 0.12 0.94 7.13 37.15 0.26 1.20 16 17 O -0.56 -5.76 12.45 -35.23 -0.44 -6.20 16 18 C -0.15 -1.11 9.21 -26.73 -0.25 -1.36 16 19 C -0.10 -0.77 5.76 -91.77 -0.53 -1.30 16 20 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.06 -0.59 5.04 -104.62 -0.53 -1.12 16 22 C -0.09 -0.92 7.35 -39.59 -0.29 -1.22 16 23 C -0.15 -1.78 10.03 -39.51 -0.40 -2.18 16 24 C 0.10 1.27 7.30 -39.42 -0.29 0.98 16 25 F -0.14 -2.00 17.27 2.25 0.04 -1.96 16 26 C -0.15 -1.68 10.03 -39.52 -0.40 -2.07 16 27 C -0.08 -0.80 9.73 -39.60 -0.39 -1.19 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.38 7.46 8.34 -40.82 -0.34 7.12 16 32 H 0.39 5.15 8.49 -40.82 -0.35 4.80 16 33 H 0.06 0.89 4.99 -51.93 -0.26 0.63 16 34 H 0.08 1.28 7.51 -51.93 -0.39 0.89 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.29 7.88 -51.93 -0.41 -0.12 16 37 H 0.38 2.27 9.12 45.56 0.42 2.69 16 38 H 0.10 0.57 8.03 -51.93 -0.42 0.15 16 39 H 0.10 0.75 6.17 -51.93 -0.32 0.43 16 40 H 0.13 1.25 5.33 -52.49 -0.28 0.97 16 41 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -36.48 366.50 -8.96 -45.44 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -4.84 Total: 10.89 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -4.32 Total: 1.05 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.01 Total: -55.15 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.35 Total: -22.10 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.48 -8.96 -45.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.803 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds