Wall clock time and date at job start Tue Mar 31 2020 13:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86795 * 120.00306 * 2 1 4 4 H 1.48498 * 109.47216 * 269.99742 * 3 2 1 5 5 H 1.48502 * 109.47160 * 29.99846 * 3 2 1 6 6 H 1.48506 * 109.47238 * 149.99900 * 3 2 1 7 7 C 1.37884 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99869 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47102 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99844 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00443 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99527 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99980 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47323 * 184.99150 * 14 13 11 16 16 C 1.52993 * 115.54868 * 65.52790 * 15 14 13 17 17 O 1.42904 * 109.47191 * 29.60970 * 16 15 14 18 18 C 1.52997 * 117.49506 * 211.20225 * 15 14 13 19 19 C 1.52997 * 117.51338 * 279.82925 * 15 14 13 20 20 H 1.09007 * 117.49828 * 145.03097 * 19 15 14 21 21 C 1.50702 * 117.50401 * 0.02562 * 19 15 14 22 22 C 1.38240 * 119.96955 * 299.72781 * 21 19 15 23 23 C 1.38200 * 120.02294 * 179.72490 * 22 21 19 24 24 C 1.38470 * 119.97228 * 0.56904 * 23 22 21 25 25 F 1.35099 * 120.02435 * 179.68044 * 24 23 22 26 26 C 1.38454 * 119.94668 * 359.70301 * 24 23 22 27 27 C 1.38200 * 119.97368 * 0.02562 * 26 24 23 28 28 H 0.97004 * 119.99950 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47518 * 59.99705 * 9 7 2 30 30 H 1.09004 * 109.47268 * 299.99209 * 9 7 2 31 31 H 0.97000 * 119.99538 * 359.97438 * 10 9 7 32 32 H 0.97005 * 120.00642 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.47147 * 64.98551 * 14 13 11 34 34 H 1.08997 * 109.47119 * 304.99072 * 14 13 11 35 35 H 1.08997 * 109.47584 * 269.60576 * 16 15 14 36 36 H 1.09004 * 109.46801 * 149.60570 * 16 15 14 37 37 H 0.96703 * 113.99448 * 179.97438 * 17 16 15 38 38 H 1.09006 * 117.49637 * 214.99955 * 18 15 14 39 39 H 1.09001 * 117.50582 * 0.02562 * 18 15 14 40 40 H 1.07994 * 119.99264 * 359.97438 * 22 21 19 41 41 H 1.08000 * 120.01877 * 180.29921 * 23 22 21 42 42 H 1.08003 * 120.01567 * 179.97438 * 26 24 23 43 43 H 1.08007 * 119.98579 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4991 0.0005 10 7 2.2028 -3.6128 0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5580 -5.1055 0.0000 13 7 2.6292 -5.9078 0.0005 14 6 2.1409 -7.2890 0.0005 15 6 3.3256 -8.2490 0.1267 16 6 4.0917 -8.1813 1.4493 17 8 3.2024 -7.7844 2.4951 18 6 3.2023 -9.6159 -0.5493 19 6 4.1285 -8.5511 -1.1402 20 1 5.2026 -8.7018 -1.0314 21 6 3.6924 -7.8800 -2.4171 22 6 2.4232 -8.1049 -2.9168 23 6 2.0201 -7.4856 -4.0847 24 6 2.8922 -6.6489 -4.7606 25 9 2.5014 -6.0480 -5.9058 26 6 4.1650 -6.4289 -4.2620 27 6 4.5638 -7.0449 -3.0910 28 1 -0.4850 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8904 31 1 3.1565 -3.4355 0.0002 32 1 3.5830 -5.7307 0.0009 33 1 1.6105 -7.4869 -0.9309 34 1 1.4638 -7.4350 0.8422 35 1 4.8999 -7.4549 1.3644 36 1 4.5076 -9.1624 1.6788 37 1 3.6212 -7.7209 3.3645 38 1 3.6670 -10.4672 -0.0517 39 1 2.2773 -9.8313 -1.0843 40 1 1.7450 -8.7615 -2.3923 41 1 1.0269 -7.6575 -4.4724 42 1 4.8462 -5.7768 -4.7885 43 1 5.5568 -6.8738 -2.7021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426418634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:30 Heat of formation + Delta-G solvation = -103.501539 kcal Electronic energy + Delta-G solvation = -27213.680733 eV Core-core repulsion = 23172.930582 eV Total energy + Delta-G solvation = -4040.750151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.92374 -41.39385 -40.44104 -38.82304 -36.78176 -36.14314 -35.07870 -34.22406 -32.14912 -31.40316 -29.61265 -27.84763 -26.98611 -24.90392 -24.38965 -23.77968 -21.89598 -21.62907 -20.39616 -19.56828 -18.75662 -18.26805 -17.96505 -17.54025 -17.23384 -16.68707 -16.59594 -16.48486 -16.32461 -15.88410 -15.59337 -15.24904 -14.94325 -14.85326 -14.55721 -14.42861 -14.20983 -14.02388 -13.86731 -13.54524 -13.35458 -13.15865 -12.88665 -12.70184 -12.46941 -12.21222 -12.02648 -11.80099 -11.47436 -11.45553 -11.39311 -11.14752 -10.79411 -10.52785 -10.22763 -10.00758 -9.48405 -9.37132 -8.27321 -6.44008 0.10417 0.28038 1.43069 1.46547 1.57420 1.91073 2.33308 2.38106 2.44022 3.00156 3.07572 3.20655 3.32167 3.58639 3.67144 3.74757 3.87938 3.92580 3.94532 4.04478 4.27111 4.29973 4.47141 4.61185 4.71537 4.82214 4.87244 4.95234 4.98146 5.02389 5.07803 5.11995 5.17062 5.21272 5.27812 5.29922 5.50668 5.55307 5.63272 5.71809 5.86948 5.92830 6.32425 6.68018 7.02823 7.25665 7.38092 7.79968 8.85362 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010187 B = 0.003874 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.042794 B = 7225.170295 C = 9019.830814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.253 1.253 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.288 3.712 10 N -0.724 5.724 11 C 0.691 3.309 12 O -0.655 6.655 13 N -0.715 5.715 14 C 0.184 3.816 15 C -0.138 4.138 16 C 0.115 3.885 17 O -0.592 6.592 18 C -0.142 4.142 19 C -0.086 4.086 20 H 0.153 0.847 21 C -0.061 4.061 22 C -0.096 4.096 23 C -0.167 4.167 24 C 0.064 3.936 25 F -0.156 7.156 26 C -0.157 4.157 27 C -0.078 4.078 28 H 0.268 0.732 29 H -0.020 1.020 30 H -0.017 1.017 31 H 0.403 0.597 32 H 0.405 0.595 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.395 0.605 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.148 0.852 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.637 -22.408 -1.901 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.165 3.835 10 N -0.378 5.378 11 C 0.391 3.609 12 O -0.538 6.538 13 N -0.370 5.370 14 C 0.060 3.940 15 C -0.139 4.139 16 C 0.037 3.963 17 O -0.400 6.400 18 C -0.179 4.179 19 C -0.104 4.104 20 H 0.171 0.829 21 C -0.062 4.062 22 C -0.113 4.113 23 C -0.186 4.186 24 C 0.045 3.955 25 F -0.135 7.135 26 C -0.175 4.175 27 C -0.096 4.096 28 H 0.077 0.923 29 H -0.002 1.002 30 H 0.001 0.999 31 H 0.238 0.762 32 H 0.240 0.760 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.244 0.756 38 H 0.152 0.848 39 H 0.117 0.883 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.166 0.834 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.955 -22.468 -2.427 27.664 hybrid contribution 0.320 1.382 -0.057 1.420 sum 16.275 -21.086 -2.484 26.752 Atomic orbital electron populations 1.70156 1.08376 1.28532 1.50013 1.26091 0.95770 1.03938 0.93842 0.85126 0.78520 0.76797 0.78559 1.19685 1.20895 1.17708 1.21587 0.94268 0.90392 1.52840 0.89796 1.18352 0.88107 0.83535 0.93548 1.45241 1.10643 1.03850 1.78028 1.16317 0.85107 0.81622 0.77844 1.90822 1.17032 1.85022 1.60937 1.44609 1.08419 1.04267 1.79718 1.20448 0.95047 0.78436 1.00025 1.21689 0.99067 0.99236 0.93891 1.21695 0.90198 1.00105 0.84270 1.86551 1.40533 1.91972 1.20949 1.23488 1.01579 0.91508 1.01327 1.21303 0.99755 1.01234 0.88067 0.82908 1.19333 0.93456 0.97610 0.95765 1.21130 0.96711 0.99182 0.94324 1.21305 1.00354 0.99272 0.97654 1.18135 0.95544 0.97267 0.84589 1.91453 1.91645 1.82254 1.48178 1.21402 0.94665 1.02639 0.98839 1.21145 1.01093 0.94414 0.92951 0.92278 1.00246 0.99950 0.76231 0.75963 0.93034 0.93683 0.91941 0.90425 0.75569 0.84816 0.88315 0.84082 0.84929 0.83421 0.81619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.28 21.45 0.28 -57.68 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.99 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.55 -31.14 9.28 25.60 0.24 -30.90 16 8 H 0.08 4.25 7.60 -2.91 -0.02 4.22 16 9 C 0.29 16.79 5.43 85.63 0.46 17.26 16 10 N -0.72 -33.19 5.55 -482.29 -2.68 -35.87 16 11 C 0.69 31.04 8.57 179.06 1.53 32.58 16 12 O -0.65 -36.53 16.34 -3.99 -0.07 -36.60 16 13 N -0.71 -22.23 5.48 -478.53 -2.62 -24.85 16 14 C 0.18 5.09 4.42 86.38 0.38 5.47 16 15 C -0.14 -2.16 2.04 -52.18 -0.11 -2.27 16 16 C 0.11 1.40 7.13 71.98 0.51 1.92 16 17 O -0.59 -11.08 12.45 -148.98 -1.85 -12.94 16 18 C -0.14 -1.52 9.21 30.59 0.28 -1.24 16 19 C -0.09 -0.95 5.76 -11.54 -0.07 -1.02 16 20 H 0.15 0.75 8.14 -2.38 -0.02 0.73 16 21 C -0.06 -1.05 5.04 -19.86 -0.10 -1.15 16 22 C -0.10 -2.04 7.35 22.26 0.16 -1.87 16 23 C -0.17 -4.25 10.03 22.32 0.22 -4.03 16 24 C 0.06 1.71 7.30 22.38 0.16 1.87 16 25 F -0.16 -4.72 17.27 44.97 0.78 -3.94 16 26 C -0.16 -3.36 10.03 22.31 0.22 -3.14 16 27 C -0.08 -1.29 9.73 22.26 0.22 -1.08 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 30 H -0.02 -1.14 8.14 -2.38 -0.02 -1.16 16 31 H 0.40 15.22 8.34 -92.71 -0.77 14.45 16 32 H 0.41 9.79 8.49 -92.70 -0.79 9.01 16 33 H 0.05 1.53 4.99 -2.39 -0.01 1.52 16 34 H 0.04 1.55 7.51 -2.39 -0.02 1.53 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 0.52 7.88 -2.39 -0.02 0.50 16 37 H 0.39 3.96 9.12 -74.06 -0.68 3.29 16 38 H 0.13 0.74 8.03 -2.38 -0.02 0.72 16 39 H 0.10 1.19 6.17 -2.39 -0.01 1.18 16 40 H 0.14 2.63 5.33 -2.91 -0.02 2.62 16 41 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 42 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -84.88 366.50 -0.69 -85.57 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -1.15 Total: 28.04 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 4.59 Total: 13.03 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -5.01 Total: -118.40 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -1.92 Total: -49.54 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.78 Total: -3.94 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -84.88 -0.69 -85.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.931 kcal (2) G-P(sol) polarization free energy of solvation -84.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds