Wall clock time and date at job start Tue Mar 31 2020 13:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00128 * 2 1 4 4 H 1.48500 * 109.47331 * 270.00084 * 3 2 1 5 5 H 1.48506 * 109.46867 * 29.99709 * 3 2 1 6 6 H 1.48501 * 109.47321 * 149.99365 * 3 2 1 7 7 C 1.37883 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00150 * 0.02562 * 7 2 1 9 9 C 1.50709 * 119.99688 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46889 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99912 * 180.02562 * 10 9 7 12 12 O 1.21583 * 119.99819 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99823 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00011 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47160 * 175.10552 * 14 13 11 16 16 C 1.53003 * 115.55189 * 65.21945 * 15 14 13 17 17 O 1.42895 * 109.46968 * 54.57129 * 16 15 14 18 18 C 1.53008 * 117.49949 * 210.88798 * 15 14 13 19 19 C 1.53002 * 117.50194 * 279.54405 * 15 14 13 20 20 H 1.09002 * 117.49680 * 0.02562 * 19 15 14 21 21 C 1.50699 * 117.49777 * 145.01899 * 19 15 14 22 22 C 1.38241 * 119.97514 * 59.73534 * 21 19 15 23 23 C 1.38193 * 120.02909 * 179.72461 * 22 21 19 24 24 C 1.38461 * 119.97126 * 0.52218 * 23 22 21 25 25 F 1.35101 * 120.02821 * 179.72845 * 24 23 22 26 26 C 1.38460 * 119.94977 * 359.74866 * 24 23 22 27 27 C 1.38198 * 119.97320 * 359.97438 * 26 24 23 28 28 H 0.97000 * 120.00244 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47022 * 60.00713 * 9 7 2 30 30 H 1.09001 * 109.47122 * 300.00030 * 9 7 2 31 31 H 0.96998 * 119.99928 * 0.02562 * 10 9 7 32 32 H 0.96998 * 120.00017 * 0.02562 * 13 11 10 33 33 H 1.08992 * 109.47492 * 295.10960 * 14 13 11 34 34 H 1.09002 * 109.46794 * 55.11213 * 14 13 11 35 35 H 1.08996 * 109.47039 * 174.57297 * 16 15 14 36 36 H 1.09000 * 109.46499 * 294.57509 * 16 15 14 37 37 H 0.96697 * 114.00467 * 180.02562 * 17 16 15 38 38 H 1.08995 * 117.49829 * 214.98092 * 18 15 14 39 39 H 1.09002 * 117.49657 * 359.97438 * 18 15 14 40 40 H 1.08001 * 119.98331 * 359.97300 * 22 21 19 41 41 H 1.08002 * 120.01642 * 180.29325 * 23 22 21 42 42 H 1.08002 * 120.01077 * 179.97438 * 26 24 23 43 43 H 1.07997 * 119.98573 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 5.3250 -2.8215 0.0020 12 8 6.1150 -1.8973 0.0025 13 7 5.7742 -4.0922 0.0013 14 6 7.2145 -4.3599 0.0018 15 6 7.4533 -5.8662 0.1240 16 6 6.9658 -6.7095 -1.0559 17 8 7.5375 -6.2101 -2.2666 18 6 8.7243 -6.3241 0.8422 19 6 7.3615 -6.4851 1.5203 20 1 7.1306 -5.8192 2.3518 21 6 6.7983 -7.8787 1.6280 22 6 7.4139 -8.9254 0.9672 23 6 6.9017 -10.2048 1.0698 24 6 5.7651 -10.4363 1.8260 25 9 5.2602 -11.6857 1.9226 26 6 5.1461 -9.3863 2.4828 27 6 5.6635 -8.1087 2.3834 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8912 30 1 3.8752 -0.6804 -0.8888 31 1 3.3696 -3.3125 0.0002 32 1 5.1439 -4.8294 -0.0002 33 1 7.6519 -3.9970 -0.9282 34 1 7.6787 -3.8489 0.8454 35 1 7.2694 -7.7463 -0.9114 36 1 5.8790 -6.6542 -1.1175 37 1 7.2712 -6.6979 -3.0579 38 1 9.2130 -7.2262 0.4743 39 1 9.3907 -5.5522 1.2273 40 1 8.2978 -8.7438 0.3739 41 1 7.3855 -11.0232 0.5574 42 1 4.2593 -9.5656 3.0726 43 1 5.1806 -7.2894 2.8952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:37 Heat of formation + Delta-G solvation = -73.864863 kcal Electronic energy + Delta-G solvation = -26380.227992 eV Core-core repulsion = 22340.762983 eV Total energy + Delta-G solvation = -4039.465009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.23171 -40.62722 -39.22968 -38.08497 -36.14212 -34.37646 -33.79550 -32.28194 -31.60970 -30.70204 -28.27812 -27.28563 -25.84591 -24.26906 -23.22217 -22.00100 -21.18410 -20.22497 -19.55678 -18.18730 -18.05395 -17.64013 -16.88456 -16.33563 -16.29272 -15.93396 -15.81354 -15.24266 -15.09504 -14.76178 -14.33185 -14.15939 -13.96744 -13.87931 -13.51167 -13.35865 -13.25657 -13.04244 -12.86196 -12.63331 -12.33064 -12.04210 -11.90787 -11.40072 -11.25228 -10.95341 -10.80694 -10.72132 -10.65105 -10.10523 -9.93892 -9.54429 -9.49381 -9.42553 -8.85760 -8.75983 -8.68754 -7.96333 -6.18771 -4.20380 0.66801 0.80234 2.88027 3.21592 3.30106 3.36799 3.45828 3.63682 3.85092 3.86724 3.92304 4.03292 4.27692 4.36602 4.45289 4.46722 4.59709 4.68089 4.80947 4.83268 4.99407 5.03573 5.14202 5.17051 5.30491 5.41414 5.49812 5.53539 5.56307 5.69147 5.72254 5.84332 5.87654 6.00726 6.12170 6.46342 6.77846 6.81631 7.15336 7.28287 7.37773 7.44914 7.61878 8.31285 8.72558 8.85074 9.25945 9.43572 10.93254 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.002644 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.265933 B =10587.809304 C =11721.659002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.724 5.724 11 C 0.695 3.305 12 O -0.604 6.604 13 N -0.751 5.751 14 C 0.184 3.816 15 C -0.123 4.123 16 C 0.108 3.892 17 O -0.564 6.564 18 C -0.148 4.148 19 C -0.102 4.102 20 H 0.125 0.875 21 C -0.061 4.061 22 C -0.095 4.095 23 C -0.151 4.151 24 C 0.092 3.908 25 F -0.141 7.141 26 C -0.148 4.148 27 C -0.080 4.080 28 H 0.267 0.733 29 H 0.023 0.977 30 H 0.018 0.982 31 H 0.391 0.609 32 H 0.391 0.609 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.380 0.620 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.066 -23.088 2.185 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.376 5.376 11 C 0.395 3.605 12 O -0.484 6.484 13 N -0.408 5.408 14 C 0.060 3.940 15 C -0.123 4.123 16 C 0.031 3.969 17 O -0.369 6.369 18 C -0.186 4.186 19 C -0.120 4.120 20 H 0.143 0.857 21 C -0.061 4.061 22 C -0.113 4.113 23 C -0.170 4.170 24 C 0.073 3.927 25 F -0.120 7.120 26 C -0.167 4.167 27 C -0.098 4.098 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.224 0.776 32 H 0.224 0.776 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.227 0.773 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.861 -21.678 2.608 27.586 hybrid contribution -0.748 -0.546 -0.351 0.990 sum 16.113 -22.224 2.257 27.543 Atomic orbital electron populations 1.69880 1.06218 1.27391 1.49675 1.24783 0.94781 0.99172 0.93915 0.86810 0.80607 0.83170 0.79068 1.19859 1.20974 1.18409 1.21102 0.88603 0.95149 1.53074 0.90346 1.19347 0.94751 0.77718 0.96605 1.45380 1.03733 1.10960 1.77516 1.16089 0.83506 0.82652 0.78248 1.90862 1.55414 1.43230 1.58899 1.45016 1.07274 1.06423 1.82071 1.20452 0.81130 0.89879 1.02581 1.21697 1.03292 0.95620 0.91726 1.21669 0.96523 0.95220 0.83532 1.86498 1.73464 1.60487 1.16462 1.23241 0.90091 1.03400 1.01833 1.21275 1.00612 0.94103 0.95975 0.85728 1.19205 0.95562 0.93606 0.97702 1.20961 0.99976 0.91334 0.99008 1.21114 0.96387 0.98421 1.01102 1.17758 0.95014 0.79730 1.00188 1.91507 1.86763 1.38898 1.94819 1.21195 1.01659 0.92255 1.01583 1.20921 0.94846 0.96350 0.97677 0.92302 0.95948 0.96407 0.77579 0.77625 0.90680 0.91589 0.92778 0.93181 0.77336 0.87898 0.87468 0.84761 0.84736 0.84483 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.54 -14.99 9.83 -34.43 -0.34 -15.33 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.24 6.01 4.50 -5.19 -0.02 5.98 16 10 N -0.72 -15.08 5.55 -66.41 -0.37 -15.45 16 11 C 0.70 13.90 8.57 -86.92 -0.74 13.15 16 12 O -0.60 -14.59 16.34 5.29 0.09 -14.50 16 13 N -0.75 -10.84 5.49 -65.23 -0.36 -11.20 16 14 C 0.18 2.35 5.37 -4.04 -0.02 2.33 16 15 C -0.12 -1.11 1.89 -154.50 -0.29 -1.40 16 16 C 0.11 0.90 6.19 37.16 0.23 1.13 16 17 O -0.56 -5.30 13.17 -35.23 -0.46 -5.76 16 18 C -0.15 -1.07 9.25 -26.69 -0.25 -1.32 16 19 C -0.10 -0.78 5.76 -91.74 -0.53 -1.31 16 20 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 21 C -0.06 -0.45 5.05 -104.62 -0.53 -0.98 16 22 C -0.10 -0.63 7.34 -39.60 -0.29 -0.92 16 23 C -0.15 -1.08 10.03 -39.52 -0.40 -1.47 16 24 C 0.09 0.78 7.30 -39.42 -0.29 0.49 16 25 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 26 C -0.15 -1.15 10.03 -39.51 -0.40 -1.55 16 27 C -0.08 -0.60 9.73 -39.59 -0.39 -0.99 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 30 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 31 H 0.39 7.14 8.34 -40.82 -0.34 6.80 16 32 H 0.39 4.65 7.96 -40.82 -0.32 4.32 16 33 H 0.08 1.12 7.83 -51.93 -0.41 0.71 16 34 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.05 0.37 4.93 -51.93 -0.26 0.11 16 36 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 37 H 0.38 1.98 9.12 45.56 0.42 2.40 16 38 H 0.10 0.61 6.18 -51.93 -0.32 0.29 16 39 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.13 0.70 5.30 -52.49 -0.28 0.42 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -34.94 363.10 -8.63 -43.57 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.79 Total: 8.15 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -4.35 Total: -0.07 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.05 Total: -52.57 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.38 Total: -20.27 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.94 -8.63 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.296 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds