Wall clock time and date at job start Tue Mar 31 2020 13:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00105 * 2 1 4 4 H 1.48497 * 109.46943 * 90.00005 * 3 2 1 5 5 H 1.48496 * 109.47216 * 209.99972 * 3 2 1 6 6 H 1.48493 * 109.47035 * 330.00362 * 3 2 1 7 7 C 1.37877 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00260 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99522 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46991 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21592 * 119.99859 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00398 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00333 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47100 * 175.05431 * 14 13 11 16 16 C 1.52991 * 115.55110 * 279.53591 * 15 14 13 17 17 O 1.42898 * 109.47317 * 305.38909 * 16 15 14 18 18 C 1.53006 * 117.49563 * 133.82943 * 15 14 13 19 19 C 1.52997 * 59.99907 * 252.51088 * 18 15 14 20 20 H 1.08996 * 117.49678 * 107.49335 * 19 18 15 21 21 C 1.50709 * 117.51899 * 252.52019 * 19 18 15 22 22 C 1.38245 * 119.97024 * 8.35230 * 21 19 18 23 23 C 1.38200 * 120.02174 * 179.76525 * 22 21 19 24 24 C 1.38458 * 119.97464 * 0.51116 * 23 22 21 25 25 F 1.35097 * 120.02676 * 179.76465 * 24 23 22 26 26 C 1.38458 * 119.94819 * 359.74478 * 24 23 22 27 27 C 1.38201 * 119.97619 * 0.02562 * 26 24 23 28 28 H 0.97001 * 120.00210 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47235 * 299.99921 * 9 7 2 30 30 H 1.08995 * 109.47215 * 60.00420 * 9 7 2 31 31 H 0.97003 * 119.99769 * 359.97438 * 10 9 7 32 32 H 0.96999 * 120.00038 * 359.97438 * 13 11 10 33 33 H 1.08999 * 109.46753 * 295.05487 * 14 13 11 34 34 H 1.08997 * 109.46812 * 55.05293 * 14 13 11 35 35 H 1.09002 * 109.47548 * 65.38839 * 16 15 14 36 36 H 1.09002 * 109.47772 * 185.38823 * 16 15 14 37 37 H 0.96703 * 114.00344 * 180.02562 * 17 16 15 38 38 H 1.08996 * 117.50264 * 359.97438 * 18 15 14 39 39 H 1.09000 * 117.49606 * 145.01733 * 18 15 14 40 40 H 1.08001 * 119.98787 * 0.02562 * 22 21 19 41 41 H 1.08001 * 120.00903 * 180.25563 * 23 22 21 42 42 H 1.07998 * 120.01398 * 180.02562 * 26 24 23 43 43 H 1.07993 * 119.99127 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5584 -5.1055 -0.0011 13 7 2.6296 -5.9077 -0.0005 14 6 2.1412 -7.2890 -0.0017 15 6 3.3263 -8.2487 -0.1251 16 6 3.8718 -8.4450 -1.5410 17 8 2.8106 -8.8491 -2.4085 18 6 3.3623 -9.4519 0.8194 19 6 4.3293 -8.2850 1.0297 20 1 4.1449 -7.6251 1.8774 21 6 5.7790 -8.5113 0.6854 22 6 6.1625 -9.6724 0.0405 23 6 7.4909 -9.8788 -0.2800 24 6 8.4392 -8.9270 0.0545 25 9 9.7387 -9.1298 -0.2541 26 6 8.0545 -7.7669 0.7051 27 6 6.7249 -7.5605 1.0204 28 1 -0.4850 -0.8400 -0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6241 -2.5567 -0.8903 31 1 3.1567 -3.4354 -0.0009 32 1 3.5832 -5.7305 -0.0002 33 1 1.6088 -7.4868 0.9286 34 1 1.4661 -7.4349 -0.8448 35 1 4.2973 -7.5078 -1.8997 36 1 4.6444 -9.2139 -1.5295 37 1 3.0846 -8.9926 -3.3247 38 1 2.5420 -9.5594 1.5291 39 1 3.7745 -10.3836 0.4321 40 1 5.4232 -10.4165 -0.2166 41 1 7.7898 -10.7841 -0.7875 42 1 8.7933 -7.0236 0.9661 43 1 6.4247 -6.6559 1.5282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:39 Heat of formation + Delta-G solvation = -81.696093 kcal Electronic energy + Delta-G solvation = -26380.908921 eV Core-core repulsion = 22341.104325 eV Total energy + Delta-G solvation = -4039.804596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.25458 -40.64820 -39.20204 -38.09201 -36.16173 -34.49534 -33.75941 -32.33283 -31.63142 -30.70024 -27.82500 -26.93012 -25.46231 -24.29374 -23.24855 -22.54300 -21.24874 -20.18673 -19.55117 -18.15348 -18.06429 -17.66175 -16.98577 -16.58729 -16.28705 -15.95660 -15.58798 -15.35006 -15.10691 -14.66546 -14.26602 -14.00051 -13.92775 -13.79731 -13.52962 -13.35705 -13.24705 -13.06095 -12.83063 -12.58607 -12.18465 -11.96698 -11.84755 -11.40941 -11.31225 -10.97731 -10.81436 -10.75146 -10.65530 -10.17097 -10.10391 -9.51748 -9.50433 -8.84659 -8.77060 -8.75600 -8.60605 -7.85572 -6.49286 -4.22250 0.64654 0.77965 2.85690 3.22581 3.38206 3.41812 3.57269 3.63428 3.83253 3.89151 3.92286 4.02107 4.25515 4.42390 4.44397 4.46407 4.60833 4.66385 4.79125 4.82656 4.98809 5.06838 5.12926 5.29293 5.29856 5.40987 5.48941 5.51180 5.56060 5.67982 5.70183 5.82716 5.87786 6.04112 6.09998 6.44053 6.82427 6.92783 7.29528 7.37610 7.38889 7.50537 7.89960 8.31766 8.65834 8.85409 9.30144 9.52606 10.91145 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.002712 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.885051 B =10322.854662 C =11867.655833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.622 4.622 8 H 0.056 0.944 9 C 0.258 3.742 10 N -0.726 5.726 11 C 0.693 3.307 12 O -0.602 6.602 13 N -0.753 5.753 14 C 0.182 3.818 15 C -0.122 4.122 16 C 0.109 3.891 17 O -0.565 6.565 18 C -0.148 4.148 19 C -0.103 4.103 20 H 0.125 0.875 21 C -0.060 4.060 22 C -0.094 4.094 23 C -0.151 4.151 24 C 0.092 3.908 25 F -0.141 7.141 26 C -0.148 4.148 27 C -0.081 4.081 28 H 0.273 0.727 29 H 0.014 0.986 30 H 0.014 0.986 31 H 0.388 0.612 32 H 0.390 0.610 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.380 0.620 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.195 -22.786 -0.115 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.184 4.184 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.660 4.660 8 H 0.075 0.925 9 C 0.136 3.864 10 N -0.378 5.378 11 C 0.393 3.607 12 O -0.481 6.481 13 N -0.410 5.410 14 C 0.057 3.943 15 C -0.122 4.122 16 C 0.031 3.969 17 O -0.370 6.370 18 C -0.185 4.185 19 C -0.122 4.122 20 H 0.143 0.857 21 C -0.061 4.061 22 C -0.112 4.112 23 C -0.170 4.170 24 C 0.073 3.927 25 F -0.120 7.120 26 C -0.167 4.167 27 C -0.099 4.099 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.220 0.780 32 H 0.223 0.777 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.227 0.773 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.539 -21.259 0.421 26.336 hybrid contribution 1.799 -1.618 -0.547 2.481 sum 17.338 -22.877 -0.126 28.705 Atomic orbital electron populations 1.70715 1.06876 1.31146 1.45055 1.25867 0.96439 1.02681 0.93396 0.83407 0.74490 0.74645 0.76824 1.21305 1.21413 1.20803 1.22089 0.94548 0.91507 1.57853 0.92538 1.19027 0.88500 0.82618 0.96280 1.45499 1.10599 1.04169 1.77492 1.16141 0.85217 0.81020 0.78328 1.90873 1.14300 1.84278 1.58682 1.45094 1.08661 1.05013 1.82274 1.20485 0.92950 0.78309 1.02550 1.21716 0.98669 1.00986 0.90862 1.21663 0.88547 0.98693 0.87969 1.86493 1.36425 1.91051 1.23018 1.23259 1.01228 0.92449 1.01562 1.21236 0.87562 1.03463 0.99897 0.85701 1.19206 0.93751 0.94419 0.98687 1.20968 0.95171 0.97271 0.97814 1.21119 0.92906 0.99793 1.03174 1.17754 0.78365 0.96114 1.00460 1.91506 1.34141 1.95193 1.91139 1.21188 0.97561 0.97068 1.00870 1.20911 0.91412 0.99062 0.98508 0.91599 0.96794 0.96783 0.78012 0.77743 0.92012 0.90039 0.93108 0.92842 0.77318 0.87455 0.87893 0.84742 0.84717 0.84485 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.65 55.43 0.76 -26.87 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.57 29.90 -169.99 -5.08 19.49 16 4 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.62 -17.26 9.28 -34.44 -0.32 -17.58 16 8 H 0.06 1.48 7.60 -52.48 -0.40 1.09 16 9 C 0.26 6.96 4.74 -5.19 -0.02 6.94 16 10 N -0.73 -15.81 5.55 -66.42 -0.37 -16.18 16 11 C 0.69 14.53 8.57 -86.93 -0.74 13.79 16 12 O -0.60 -15.33 16.34 5.29 0.09 -15.25 16 13 N -0.75 -11.27 5.52 -65.23 -0.36 -11.63 16 14 C 0.18 2.43 5.55 -4.04 -0.02 2.41 16 15 C -0.12 -1.14 1.87 -154.51 -0.29 -1.43 16 16 C 0.11 0.96 6.33 37.15 0.24 1.20 16 17 O -0.56 -5.59 12.98 -35.23 -0.46 -6.05 16 18 C -0.15 -1.11 9.21 -26.73 -0.25 -1.35 16 19 C -0.10 -0.80 5.64 -91.77 -0.52 -1.32 16 20 H 0.13 0.99 8.14 -51.93 -0.42 0.56 16 21 C -0.06 -0.45 5.04 -104.61 -0.53 -0.97 16 22 C -0.09 -0.63 7.35 -39.59 -0.29 -0.93 16 23 C -0.15 -1.07 10.03 -39.51 -0.40 -1.47 16 24 C 0.09 0.77 7.30 -39.42 -0.29 0.49 16 25 F -0.14 -1.33 17.27 2.25 0.04 -1.30 16 26 C -0.15 -1.13 10.03 -39.51 -0.40 -1.53 16 27 C -0.08 -0.59 9.73 -39.59 -0.39 -0.98 16 28 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 29 H 0.01 0.41 8.01 -51.93 -0.42 0.00 16 30 H 0.01 0.42 8.01 -51.93 -0.42 0.00 16 31 H 0.39 7.27 8.34 -40.82 -0.34 6.93 16 32 H 0.39 4.72 8.42 -40.82 -0.34 4.37 16 33 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 34 H 0.08 1.30 7.51 -51.93 -0.39 0.91 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.38 4.98 -51.93 -0.26 0.12 16 37 H 0.38 2.13 9.12 45.56 0.42 2.54 16 38 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.10 0.63 6.17 -51.93 -0.32 0.31 16 40 H 0.13 0.72 5.34 -52.49 -0.28 0.44 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -35.70 365.84 -8.97 -44.67 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.78 Total: 9.81 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -4.31 Total: -2.22 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.03 Total: -54.68 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.37 Total: -21.29 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.70 -8.97 -44.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.025 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds