Wall clock time and date at job start Tue Mar 31 2020 13:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00105 * 2 1 4 4 H 1.48497 * 109.46943 * 90.00005 * 3 2 1 5 5 H 1.48496 * 109.47216 * 209.99972 * 3 2 1 6 6 H 1.48493 * 109.47035 * 330.00362 * 3 2 1 7 7 C 1.37877 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00260 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99522 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46991 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21592 * 119.99859 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00398 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00333 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47100 * 175.05431 * 14 13 11 16 16 C 1.52991 * 115.55110 * 279.53591 * 15 14 13 17 17 O 1.42898 * 109.47317 * 305.38909 * 16 15 14 18 18 C 1.53006 * 117.49563 * 133.82943 * 15 14 13 19 19 C 1.52997 * 59.99907 * 252.51088 * 18 15 14 20 20 H 1.08996 * 117.49678 * 107.49335 * 19 18 15 21 21 C 1.50709 * 117.51899 * 252.52019 * 19 18 15 22 22 C 1.38245 * 119.97024 * 8.35230 * 21 19 18 23 23 C 1.38200 * 120.02174 * 179.76525 * 22 21 19 24 24 C 1.38458 * 119.97464 * 0.51116 * 23 22 21 25 25 F 1.35097 * 120.02676 * 179.76465 * 24 23 22 26 26 C 1.38458 * 119.94819 * 359.74478 * 24 23 22 27 27 C 1.38201 * 119.97619 * 0.02562 * 26 24 23 28 28 H 0.97001 * 120.00210 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47235 * 299.99921 * 9 7 2 30 30 H 1.08995 * 109.47215 * 60.00420 * 9 7 2 31 31 H 0.97003 * 119.99769 * 359.97438 * 10 9 7 32 32 H 0.96999 * 120.00038 * 359.97438 * 13 11 10 33 33 H 1.08999 * 109.46753 * 295.05487 * 14 13 11 34 34 H 1.08997 * 109.46812 * 55.05293 * 14 13 11 35 35 H 1.09002 * 109.47548 * 65.38839 * 16 15 14 36 36 H 1.09002 * 109.47772 * 185.38823 * 16 15 14 37 37 H 0.96703 * 114.00344 * 180.02562 * 17 16 15 38 38 H 1.08996 * 117.50264 * 359.97438 * 18 15 14 39 39 H 1.09000 * 117.49606 * 145.01733 * 18 15 14 40 40 H 1.08001 * 119.98787 * 0.02562 * 22 21 19 41 41 H 1.08001 * 120.00903 * 180.25563 * 23 22 21 42 42 H 1.07998 * 120.01398 * 180.02562 * 26 24 23 43 43 H 1.07993 * 119.99127 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5584 -5.1055 -0.0011 13 7 2.6296 -5.9077 -0.0005 14 6 2.1412 -7.2890 -0.0017 15 6 3.3263 -8.2487 -0.1251 16 6 3.8718 -8.4450 -1.5410 17 8 2.8106 -8.8491 -2.4085 18 6 3.3623 -9.4519 0.8194 19 6 4.3293 -8.2850 1.0297 20 1 4.1449 -7.6251 1.8774 21 6 5.7790 -8.5113 0.6854 22 6 6.1625 -9.6724 0.0405 23 6 7.4909 -9.8788 -0.2800 24 6 8.4392 -8.9270 0.0545 25 9 9.7387 -9.1298 -0.2541 26 6 8.0545 -7.7669 0.7051 27 6 6.7249 -7.5605 1.0204 28 1 -0.4850 -0.8400 -0.0004 29 1 0.6247 -2.5571 0.8897 30 1 0.6241 -2.5567 -0.8903 31 1 3.1567 -3.4354 -0.0009 32 1 3.5832 -5.7305 -0.0002 33 1 1.6088 -7.4868 0.9286 34 1 1.4661 -7.4349 -0.8448 35 1 4.2973 -7.5078 -1.8997 36 1 4.6444 -9.2139 -1.5295 37 1 3.0846 -8.9926 -3.3247 38 1 2.5420 -9.5594 1.5291 39 1 3.7745 -10.3836 0.4321 40 1 5.4232 -10.4165 -0.2166 41 1 7.7898 -10.7841 -0.7875 42 1 8.7933 -7.0236 0.9661 43 1 6.4247 -6.6559 1.5282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426418644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:39 Heat of formation + Delta-G solvation = -108.591174 kcal Electronic energy + Delta-G solvation = -26382.075180 eV Core-core repulsion = 22341.104325 eV Total energy + Delta-G solvation = -4040.970854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.89754 -41.44909 -40.67474 -38.85825 -36.90584 -36.45025 -35.25328 -34.34241 -32.15435 -31.40051 -29.23807 -28.08372 -26.85201 -24.89781 -24.66638 -23.76148 -22.09754 -21.67885 -20.42551 -19.83356 -18.70665 -18.63184 -18.33331 -17.49303 -17.12111 -16.97900 -16.60939 -16.54954 -16.05908 -15.70431 -15.58380 -15.47730 -15.08692 -14.67777 -14.58610 -14.49392 -14.29663 -14.20873 -13.99189 -13.86586 -13.46995 -13.20698 -13.08450 -12.55001 -12.52640 -12.13786 -11.96275 -11.88275 -11.54485 -11.42505 -11.24819 -10.92169 -10.76593 -10.74165 -10.34966 -10.04155 -9.69583 -9.40137 -8.78672 -6.53741 0.06989 0.26064 1.56391 1.66379 1.73925 1.83940 2.15596 2.35826 2.56648 2.88270 3.09828 3.23648 3.30427 3.37760 3.47040 3.70358 3.76753 3.83376 3.94448 4.06110 4.15668 4.29296 4.41310 4.53474 4.56683 4.67426 4.79027 4.80934 4.89362 4.95633 4.98043 4.99210 5.03089 5.12801 5.17811 5.28689 5.44193 5.49010 5.51484 5.54427 5.90119 6.05804 6.15980 6.37482 6.88474 7.16771 7.32846 7.62991 8.60966 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.002712 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.885051 B =10322.854662 C =11867.655833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.033 4.033 3 Si 1.133 2.867 4 H -0.270 1.270 5 H -0.260 1.260 6 H -0.286 1.286 7 C -0.627 4.627 8 H 0.077 0.923 9 C 0.273 3.727 10 N -0.719 5.719 11 C 0.691 3.309 12 O -0.651 6.651 13 N -0.724 5.724 14 C 0.183 3.817 15 C -0.134 4.134 16 C 0.110 3.890 17 O -0.588 6.588 18 C -0.136 4.136 19 C -0.090 4.090 20 H 0.125 0.875 21 C -0.065 4.065 22 C -0.092 4.092 23 C -0.151 4.151 24 C 0.073 3.927 25 F -0.152 7.152 26 C -0.155 4.155 27 C -0.086 4.086 28 H 0.254 0.746 29 H -0.019 1.019 30 H -0.021 1.021 31 H 0.405 0.595 32 H 0.408 0.592 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.396 0.604 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.875 -23.545 0.078 30.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.231 4.231 3 Si 0.953 3.047 4 H -0.195 1.195 5 H -0.184 1.184 6 H -0.211 1.211 7 C -0.665 4.665 8 H 0.095 0.905 9 C 0.149 3.851 10 N -0.373 5.373 11 C 0.391 3.609 12 O -0.533 6.533 13 N -0.381 5.381 14 C 0.059 3.941 15 C -0.135 4.135 16 C 0.033 3.967 17 O -0.396 6.396 18 C -0.173 4.173 19 C -0.108 4.108 20 H 0.143 0.857 21 C -0.065 4.065 22 C -0.110 4.110 23 C -0.170 4.170 24 C 0.054 3.946 25 F -0.131 7.131 26 C -0.173 4.173 27 C -0.104 4.104 28 H 0.063 0.937 29 H -0.001 1.001 30 H -0.003 1.003 31 H 0.241 0.759 32 H 0.244 0.756 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.246 0.754 38 H 0.128 0.872 39 H 0.141 0.859 40 H 0.170 0.830 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 18.306 -22.090 0.605 28.695 hybrid contribution 0.959 -1.505 -0.613 1.887 sum 19.265 -23.595 -0.007 30.461 Atomic orbital electron populations 1.70866 1.08310 1.29988 1.47510 1.27664 0.96342 1.07150 0.91989 0.82751 0.74140 0.69908 0.77951 1.19547 1.18422 1.21143 1.22433 0.95585 0.91569 1.56884 0.90521 1.18529 0.88796 0.84639 0.93179 1.45107 1.10687 1.03577 1.77926 1.16321 0.85145 0.81563 0.77906 1.90841 1.16829 1.84984 1.60689 1.44859 1.08802 1.04433 1.80024 1.20520 0.94641 0.77840 1.01129 1.21550 0.98166 1.01547 0.92219 1.21705 0.88628 0.99108 0.87253 1.86457 1.37522 1.91099 1.24508 1.23411 1.01044 0.92616 1.00265 1.21193 0.87589 1.03467 0.98568 0.85696 1.19231 0.93341 0.94855 0.99047 1.21146 0.95353 0.97306 0.97155 1.21329 0.92811 1.00038 1.02801 1.18040 0.78241 0.96982 1.01376 1.91477 1.34930 1.95309 1.91353 1.21344 0.98022 0.97184 1.00786 1.21076 0.91275 0.99545 0.98484 0.93664 1.00079 1.00269 0.75920 0.75566 0.92418 0.92824 0.93871 0.90553 0.75409 0.87186 0.85874 0.82981 0.83149 0.83681 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.65 21.45 0.29 -58.02 16 2 C -0.03 -1.88 5.46 84.66 0.46 -1.41 16 3 Si 1.13 48.09 29.90 68.60 2.05 50.14 16 4 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 5 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 6 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.63 -34.73 9.28 25.60 0.24 -34.49 16 8 H 0.08 3.87 7.60 -2.91 -0.02 3.85 16 9 C 0.27 15.22 4.74 85.63 0.41 15.62 16 10 N -0.72 -31.52 5.55 -482.30 -2.68 -34.20 16 11 C 0.69 29.36 8.57 179.06 1.53 30.90 16 12 O -0.65 -34.41 16.34 -4.00 -0.07 -34.47 16 13 N -0.72 -21.21 5.52 -478.54 -2.64 -23.85 16 14 C 0.18 4.82 5.55 86.38 0.48 5.30 16 15 C -0.13 -2.27 1.87 -52.18 -0.10 -2.36 16 16 C 0.11 1.72 6.33 71.98 0.46 2.17 16 17 O -0.59 -10.85 12.98 -148.98 -1.93 -12.79 16 18 C -0.14 -1.66 9.21 30.60 0.28 -1.38 16 19 C -0.09 -1.15 5.64 -11.54 -0.07 -1.22 16 20 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 21 C -0.06 -0.77 5.04 -19.86 -0.10 -0.87 16 22 C -0.09 -0.94 7.35 22.26 0.16 -0.78 16 23 C -0.15 -1.77 10.03 22.31 0.22 -1.54 16 24 C 0.07 1.10 7.30 22.37 0.16 1.26 16 25 F -0.15 -2.72 17.27 44.97 0.78 -1.94 16 26 C -0.15 -2.10 10.03 22.31 0.22 -1.87 16 27 C -0.09 -1.06 9.73 22.26 0.22 -0.84 16 28 H 0.25 16.57 7.22 -92.71 -0.67 15.90 16 29 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 30 H -0.02 -1.28 8.01 -2.39 -0.02 -1.30 16 31 H 0.41 14.68 8.34 -92.71 -0.77 13.91 16 32 H 0.41 9.13 8.42 -92.71 -0.78 8.35 16 33 H 0.06 1.58 7.94 -2.39 -0.02 1.56 16 34 H 0.05 1.75 7.51 -2.39 -0.02 1.73 16 35 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.83 4.98 -2.39 -0.01 0.82 16 37 H 0.40 3.88 9.12 -74.06 -0.68 3.21 16 38 H 0.11 1.33 8.08 -2.39 -0.02 1.31 16 39 H 0.12 1.03 6.17 -2.39 -0.01 1.01 16 40 H 0.15 0.99 5.34 -2.91 -0.02 0.98 16 41 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 43 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -79.92 365.84 -0.66 -80.58 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -1.05 Total: 26.06 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 4.58 Total: 8.48 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -5.03 Total: -116.06 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -2.00 Total: -47.26 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.05 Total: 50.14 kcal Total: -79.92 -0.66 -80.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.016 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds