Wall clock time and date at job start Tue Mar 31 2020 13:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00310 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00016 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.54031 * 324.99804 * 14 13 11 16 16 C 1.53175 * 109.54169 * 85.17764 * 14 13 11 17 17 C 1.53288 * 109.06223 * 62.97340 * 16 14 13 18 18 O 1.42900 * 109.46286 * 57.55269 * 17 16 14 19 19 C 1.42907 * 114.09473 * 298.84074 * 18 17 16 20 20 H 1.08998 * 109.48056 * 301.17416 * 19 18 17 21 21 C 1.50701 * 109.48548 * 181.14605 * 19 18 17 22 22 C 1.38238 * 119.97719 * 324.77799 * 21 19 18 23 23 C 1.38203 * 120.02620 * 179.76863 * 22 21 19 24 24 C 1.38462 * 119.97105 * 0.50467 * 23 22 21 25 25 F 1.35107 * 120.02477 * 179.76712 * 24 23 22 26 26 C 1.38452 * 119.95055 * 359.75173 * 24 23 22 27 27 C 1.38203 * 119.97436 * 359.97438 * 26 24 23 28 28 C 1.53090 * 109.41722 * 61.16129 * 19 18 17 29 29 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 31 31 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 32 32 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 33 33 H 0.97002 * 119.99885 * 0.02562 * 13 11 10 34 34 H 1.08999 * 109.52137 * 182.79210 * 16 14 13 35 35 H 1.08990 * 109.52649 * 302.98107 * 16 14 13 36 36 H 1.08998 * 109.45329 * 297.55397 * 17 16 14 37 37 H 1.09000 * 109.46481 * 177.55846 * 17 16 14 38 38 H 1.07997 * 119.98705 * 0.02562 * 22 21 19 39 39 H 1.07994 * 120.01455 * 180.25148 * 23 22 21 40 40 H 1.08004 * 120.01558 * 180.02562 * 26 24 23 41 41 H 1.08004 * 119.98639 * 180.02562 * 27 26 24 42 42 H 1.09001 * 109.52509 * 182.48125 * 28 19 18 43 43 H 1.09001 * 109.52619 * 62.29244 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5586 -5.1055 0.0156 13 7 2.6299 -5.9076 0.0203 14 6 2.1416 -7.2889 0.0254 15 1 1.2261 -7.3498 0.6141 16 6 1.8578 -7.7373 -1.4115 17 6 3.1672 -7.7226 -2.2083 18 8 4.1228 -8.5716 -1.5696 19 6 4.4607 -8.1726 -0.2396 20 1 4.8660 -7.1609 -0.2555 21 6 5.4910 -9.1180 0.3224 22 6 5.4505 -10.4596 -0.0081 23 6 6.3977 -11.3267 0.5029 24 6 7.3813 -10.8528 1.3545 25 9 8.3050 -11.7003 1.8584 26 6 7.4176 -9.5098 1.6891 27 6 6.4728 -8.6437 1.1723 28 6 3.2055 -8.2061 0.6362 29 1 -0.4850 0.8400 0.0004 30 1 0.6245 -2.5529 0.8956 31 1 0.6244 -2.5609 -0.8844 32 1 3.1568 -3.4352 0.0096 33 1 3.5835 -5.7303 0.0205 34 1 1.4479 -8.7472 -1.4036 35 1 1.1417 -7.0561 -1.8709 36 1 3.5554 -6.7050 -2.2500 37 1 2.9805 -8.0821 -3.2203 38 1 4.6809 -10.8297 -0.6693 39 1 6.3684 -12.3740 0.2413 40 1 8.1846 -9.1390 2.3530 41 1 6.5012 -7.5959 1.4329 42 1 3.4523 -7.8600 1.6399 43 1 2.8227 -9.2255 0.6854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426434946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:40 Heat of formation + Delta-G solvation = -104.352960 kcal Electronic energy + Delta-G solvation = -26558.765847 eV Core-core repulsion = 22517.978776 eV Total energy + Delta-G solvation = -4040.787072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.20556 -40.62614 -39.29399 -38.31502 -35.11215 -34.05179 -32.88530 -32.44016 -31.49459 -31.01956 -29.32187 -27.06262 -25.03599 -24.04210 -23.36341 -22.75265 -21.70624 -20.67852 -19.46123 -18.29728 -18.00202 -16.98988 -16.80089 -16.14302 -15.96225 -15.86486 -15.76029 -15.38661 -15.01231 -14.79623 -14.60973 -13.98425 -13.93849 -13.86883 -13.54520 -13.36476 -13.27148 -12.78899 -12.53044 -12.28626 -12.16925 -11.96813 -11.87443 -11.57576 -11.34273 -11.06652 -10.99231 -10.88530 -10.57180 -10.31776 -9.77345 -9.46054 -9.44804 -9.40346 -8.89518 -8.82166 -8.70909 -7.80344 -6.16937 -4.23798 0.73750 0.88779 3.14909 3.24345 3.25057 3.29915 3.33748 3.49925 3.88535 3.91802 4.30512 4.31542 4.39440 4.52826 4.61993 4.74601 4.81119 4.86731 4.94285 4.98843 5.07698 5.10549 5.19085 5.28822 5.43073 5.54158 5.63432 5.65261 5.76843 5.79900 5.81666 5.90208 5.95177 6.06824 6.15350 6.51667 6.81163 6.98441 7.06880 7.48011 7.51768 7.54735 7.87360 8.01618 8.73779 8.90563 9.30006 9.45623 10.93197 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.002395 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.430423 B =11686.147226 C =12668.303930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.268 3.732 10 N -0.730 5.730 11 C 0.693 3.307 12 O -0.599 6.599 13 N -0.755 5.755 14 C 0.165 3.835 15 H 0.094 0.906 16 C -0.168 4.168 17 C 0.064 3.936 18 O -0.375 6.375 19 C 0.133 3.867 20 H 0.068 0.932 21 C -0.089 4.089 22 C -0.063 4.063 23 C -0.157 4.157 24 C 0.096 3.904 25 F -0.142 7.142 26 C -0.154 4.154 27 C -0.080 4.080 28 C -0.151 4.151 29 H 0.266 0.734 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.385 0.615 33 H 0.387 0.613 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.083 0.917 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.694 -21.783 0.234 25.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.381 5.381 11 C 0.393 3.607 12 O -0.478 6.478 13 N -0.412 5.412 14 C 0.059 3.941 15 H 0.112 0.888 16 C -0.207 4.207 17 C -0.012 4.012 18 O -0.295 6.295 19 C 0.075 3.925 20 H 0.086 0.914 21 C -0.090 4.090 22 C -0.081 4.081 23 C -0.175 4.175 24 C 0.077 3.923 25 F -0.120 7.120 26 C -0.173 4.173 27 C -0.098 4.098 28 C -0.189 4.189 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.217 0.783 33 H 0.221 0.779 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.101 0.899 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.480 -21.995 0.172 25.289 hybrid contribution 1.360 1.200 0.213 1.826 sum 13.839 -20.795 0.385 24.982 Atomic orbital electron populations 1.69964 1.06082 1.27403 1.48804 1.24941 0.94917 0.99392 0.94754 0.86476 0.79407 0.82352 0.78652 1.20090 1.21068 1.20104 1.21180 0.93198 0.90459 1.53292 0.92040 1.18970 0.87745 0.81044 0.97579 1.45740 1.10756 1.04488 1.77161 1.16157 0.85235 0.81035 0.78248 1.90874 1.14178 1.84170 1.58572 1.45331 1.08595 1.04965 1.82350 1.20675 0.97527 0.79946 0.95963 0.88819 1.22636 0.98576 1.02651 0.96837 1.22611 0.87997 0.94524 0.96093 1.87908 1.61502 1.53489 1.26572 1.20767 0.92542 0.95897 0.83279 0.91388 1.19670 0.96412 0.94418 0.98460 1.20897 0.97652 0.92157 0.97405 1.21190 0.95700 1.01347 0.99301 1.17784 0.89227 0.87983 0.97294 1.91503 1.64309 1.70461 1.85765 1.21099 1.01394 0.91755 1.03012 1.20853 0.92911 1.00100 0.95960 1.22505 0.95299 1.01277 0.99851 0.92388 0.95772 0.95766 0.78254 0.77897 0.90436 0.89692 0.92720 0.88671 0.84302 0.84688 0.84548 0.84688 0.89874 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.27 7.05 5.43 -5.19 -0.03 7.02 16 10 N -0.73 -15.09 5.55 -66.41 -0.37 -15.46 16 11 C 0.69 13.58 8.53 -86.91 -0.74 12.84 16 12 O -0.60 -14.36 16.01 5.29 0.08 -14.28 16 13 N -0.75 -10.30 4.40 -58.49 -0.26 -10.56 16 14 C 0.16 1.96 2.81 -67.75 -0.19 1.77 16 15 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 16 C -0.17 -1.88 5.82 -26.49 -0.15 -2.03 16 17 C 0.06 0.64 6.68 37.31 0.25 0.89 16 18 O -0.38 -3.77 9.56 -35.23 -0.34 -4.11 16 19 C 0.13 1.17 2.68 -27.84 -0.07 1.09 16 20 H 0.07 0.56 6.62 -51.93 -0.34 0.22 16 21 C -0.09 -0.76 5.01 -104.62 -0.52 -1.28 16 22 C -0.06 -0.52 9.35 -39.59 -0.37 -0.89 16 23 C -0.16 -1.27 10.03 -39.51 -0.40 -1.66 16 24 C 0.10 0.86 7.30 -39.42 -0.29 0.57 16 25 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 26 C -0.15 -1.22 10.03 -39.52 -0.40 -1.61 16 27 C -0.08 -0.61 9.68 -39.59 -0.38 -1.00 16 28 C -0.15 -1.35 5.06 -26.59 -0.13 -1.48 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.39 6.77 8.34 -40.82 -0.34 6.43 16 33 H 0.39 4.26 7.08 -40.82 -0.29 3.97 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.58 7.75 -51.93 -0.40 0.18 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.14 1.05 7.63 -52.49 -0.40 0.65 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -32.62 362.14 -9.45 -42.06 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.93 Total: 6.78 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -3.85 Total: 0.99 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.11 Total: -51.22 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.25 Total: -18.38 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.62 -9.45 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.288 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds