Wall clock time and date at job start Tue Mar 31 2020 13:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21589 * 120.00310 * 0.02562 * 11 10 9 13 13 N 1.34782 * 120.00074 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00016 * 180.02562 * 13 11 10 15 15 H 1.09006 * 109.54031 * 324.99804 * 14 13 11 16 16 C 1.53175 * 109.54169 * 85.17764 * 14 13 11 17 17 C 1.53288 * 109.06223 * 62.97340 * 16 14 13 18 18 O 1.42900 * 109.46286 * 57.55269 * 17 16 14 19 19 C 1.42907 * 114.09473 * 298.84074 * 18 17 16 20 20 H 1.08998 * 109.48056 * 301.17416 * 19 18 17 21 21 C 1.50701 * 109.48548 * 181.14605 * 19 18 17 22 22 C 1.38238 * 119.97719 * 324.77799 * 21 19 18 23 23 C 1.38203 * 120.02620 * 179.76863 * 22 21 19 24 24 C 1.38462 * 119.97105 * 0.50467 * 23 22 21 25 25 F 1.35107 * 120.02477 * 179.76712 * 24 23 22 26 26 C 1.38452 * 119.95055 * 359.75173 * 24 23 22 27 27 C 1.38203 * 119.97436 * 359.97438 * 26 24 23 28 28 C 1.53090 * 109.41722 * 61.16129 * 19 18 17 29 29 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 31 31 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 32 32 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 33 33 H 0.97002 * 119.99885 * 0.02562 * 13 11 10 34 34 H 1.08999 * 109.52137 * 182.79210 * 16 14 13 35 35 H 1.08990 * 109.52649 * 302.98107 * 16 14 13 36 36 H 1.08998 * 109.45329 * 297.55397 * 17 16 14 37 37 H 1.09000 * 109.46481 * 177.55846 * 17 16 14 38 38 H 1.07997 * 119.98705 * 0.02562 * 22 21 19 39 39 H 1.07994 * 120.01455 * 180.25148 * 23 22 21 40 40 H 1.08004 * 120.01558 * 180.02562 * 26 24 23 41 41 H 1.08004 * 119.98639 * 180.02562 * 27 26 24 42 42 H 1.09001 * 109.52509 * 182.48125 * 28 19 18 43 43 H 1.09001 * 109.52619 * 62.29244 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 1.7540 -4.8832 0.0154 12 8 0.5586 -5.1055 0.0156 13 7 2.6299 -5.9076 0.0203 14 6 2.1416 -7.2889 0.0254 15 1 1.2261 -7.3498 0.6141 16 6 1.8578 -7.7373 -1.4115 17 6 3.1672 -7.7226 -2.2083 18 8 4.1228 -8.5716 -1.5696 19 6 4.4607 -8.1726 -0.2396 20 1 4.8660 -7.1609 -0.2555 21 6 5.4910 -9.1180 0.3224 22 6 5.4505 -10.4596 -0.0081 23 6 6.3977 -11.3267 0.5029 24 6 7.3813 -10.8528 1.3545 25 9 8.3050 -11.7003 1.8584 26 6 7.4176 -9.5098 1.6891 27 6 6.4728 -8.6437 1.1723 28 6 3.2055 -8.2061 0.6362 29 1 -0.4850 0.8400 0.0004 30 1 0.6245 -2.5529 0.8956 31 1 0.6244 -2.5609 -0.8844 32 1 3.1568 -3.4352 0.0096 33 1 3.5835 -5.7303 0.0205 34 1 1.4479 -8.7472 -1.4036 35 1 1.1417 -7.0561 -1.8709 36 1 3.5554 -6.7050 -2.2500 37 1 2.9805 -8.0821 -3.2203 38 1 4.6809 -10.8297 -0.6693 39 1 6.3684 -12.3740 0.2413 40 1 8.1846 -9.1390 2.3530 41 1 6.5012 -7.5959 1.4329 42 1 3.4523 -7.8600 1.6399 43 1 2.8227 -9.2255 0.6854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426434946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:40 Heat of formation + Delta-G solvation = -125.885704 kcal Electronic energy + Delta-G solvation = -26559.699577 eV Core-core repulsion = 22517.978776 eV Total energy + Delta-G solvation = -4041.720801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.88758 -41.60563 -40.44196 -39.25761 -36.42754 -35.81668 -34.38256 -33.60221 -32.31175 -32.05937 -30.07173 -28.99876 -25.93951 -24.82894 -24.70649 -23.92074 -22.42417 -22.18740 -20.60534 -19.85831 -18.67792 -18.13059 -17.68773 -17.44550 -17.27847 -16.69433 -16.56034 -16.52710 -16.39767 -16.10871 -15.57806 -15.31606 -15.02905 -14.92437 -14.44154 -14.24176 -14.13266 -14.02627 -13.92979 -13.63096 -13.40111 -13.12852 -12.91480 -12.89016 -12.67321 -12.32885 -12.22180 -11.96359 -11.93147 -11.48738 -11.37985 -11.20691 -10.77775 -10.61357 -10.21509 -10.03730 -9.59421 -9.52213 -8.26890 -6.43207 0.10756 0.30789 1.44442 1.48556 1.56503 1.88355 2.27159 2.40630 2.51178 2.79179 3.08100 3.30269 3.51759 3.57720 3.77012 3.81734 3.95015 3.96796 4.02210 4.10136 4.19779 4.39193 4.45307 4.47585 4.66388 4.83439 4.83962 4.96287 4.99023 5.05797 5.06710 5.10667 5.15190 5.18732 5.29352 5.29614 5.50348 5.51784 5.59955 5.69684 5.87035 5.92132 6.22156 6.25859 6.68590 7.26113 7.32689 7.75265 8.85092 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.002395 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.430423 B =11686.147226 C =12668.303930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.287 3.713 10 N -0.724 5.724 11 C 0.694 3.306 12 O -0.646 6.646 13 N -0.728 5.728 14 C 0.160 3.840 15 H 0.071 0.929 16 C -0.164 4.164 17 C 0.070 3.930 18 O -0.378 6.378 19 C 0.134 3.866 20 H 0.077 0.923 21 C -0.096 4.096 22 C -0.069 4.069 23 C -0.160 4.160 24 C 0.078 3.922 25 F -0.151 7.151 26 C -0.157 4.157 27 C -0.080 4.080 28 C -0.139 4.139 29 H 0.268 0.732 30 H -0.015 1.015 31 H -0.015 1.015 32 H 0.404 0.596 33 H 0.406 0.594 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.092 0.908 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.393 -21.889 0.309 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.163 3.837 10 N -0.378 5.378 11 C 0.394 3.606 12 O -0.529 6.529 13 N -0.386 5.386 14 C 0.055 3.945 15 H 0.089 0.911 16 C -0.203 4.203 17 C -0.007 4.007 18 O -0.297 6.297 19 C 0.076 3.924 20 H 0.095 0.905 21 C -0.096 4.096 22 C -0.087 4.087 23 C -0.178 4.178 24 C 0.059 3.941 25 F -0.129 7.129 26 C -0.175 4.175 27 C -0.098 4.098 28 C -0.177 4.177 29 H 0.077 0.923 30 H 0.002 0.998 31 H 0.003 0.997 32 H 0.239 0.761 33 H 0.242 0.758 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.127 0.873 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.111 0.889 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.265 -22.162 0.247 26.911 hybrid contribution 0.500 1.111 0.194 1.234 sum 15.766 -21.051 0.442 26.304 Atomic orbital electron populations 1.70133 1.08248 1.28585 1.49952 1.26050 0.95764 1.03834 0.93947 0.85215 0.77896 0.76662 0.79473 1.18672 1.21222 1.18668 1.21569 0.94296 0.90487 1.52863 0.89817 1.18376 0.88067 0.83337 0.93877 1.45309 1.10837 1.03918 1.77709 1.16289 0.85146 0.81508 0.77704 1.90845 1.16694 1.84863 1.60456 1.45069 1.08728 1.04409 1.80348 1.20850 0.97892 0.79140 0.96587 0.91129 1.22577 0.98853 1.02740 0.96128 1.22565 0.87109 0.94438 0.96564 1.87921 1.61206 1.53477 1.27145 1.20826 0.92396 0.96550 0.82646 0.90519 1.19703 0.96647 0.94396 0.98871 1.21006 0.97847 0.92244 0.97556 1.21356 0.95374 1.02126 0.98961 1.18048 0.89554 0.88475 0.98000 1.91480 1.64679 1.70796 1.85977 1.21322 1.01770 0.91411 1.03011 1.21080 0.92314 1.01067 0.95369 1.22434 0.94317 1.00895 1.00034 0.92282 0.99754 0.99722 0.76086 0.75758 0.88776 0.92655 0.93293 0.87301 0.83773 0.83444 0.83106 0.82723 0.88911 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.98 41.77 29.54 68.60 2.03 43.80 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.55 -29.75 9.28 25.60 0.24 -29.51 16 8 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 9 C 0.29 15.67 5.43 85.63 0.46 16.13 16 10 N -0.72 -30.16 5.55 -482.29 -2.68 -32.84 16 11 C 0.69 27.54 8.53 179.05 1.53 29.07 16 12 O -0.65 -32.30 16.01 -3.99 -0.06 -32.36 16 13 N -0.73 -19.16 4.40 -457.23 -2.01 -21.18 16 14 C 0.16 3.68 2.81 45.11 0.13 3.81 16 15 H 0.07 2.00 7.58 -2.38 -0.02 1.98 16 16 C -0.16 -3.55 5.82 30.75 0.18 -3.37 16 17 C 0.07 1.27 6.68 72.08 0.48 1.76 16 18 O -0.38 -6.64 9.56 -148.98 -1.42 -8.06 16 19 C 0.13 1.98 2.68 29.88 0.08 2.06 16 20 H 0.08 1.01 6.62 -2.39 -0.02 1.00 16 21 C -0.10 -1.37 5.01 -19.86 -0.10 -1.47 16 22 C -0.07 -0.98 9.35 22.26 0.21 -0.78 16 23 C -0.16 -2.31 10.03 22.31 0.22 -2.08 16 24 C 0.08 1.27 7.30 22.37 0.16 1.44 16 25 F -0.15 -2.78 17.27 44.97 0.78 -2.00 16 26 C -0.16 -2.14 10.03 22.31 0.22 -1.91 16 27 C -0.08 -1.01 9.68 22.26 0.22 -0.79 16 28 C -0.14 -2.15 5.06 30.68 0.16 -2.00 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 30 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 31 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 32 H 0.40 13.66 8.34 -92.71 -0.77 12.89 16 33 H 0.41 7.98 7.08 -92.71 -0.66 7.32 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 0.95 7.75 -2.39 -0.02 0.94 16 37 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.14 1.87 7.63 -2.91 -0.02 1.85 16 39 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -73.10 362.14 1.18 -71.92 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.38 Total: 23.28 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 4.65 Total: 13.00 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -4.41 Total: -109.58 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.49 Total: -40.43 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -73.10 1.18 -71.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.964 kcal (2) G-P(sol) polarization free energy of solvation -73.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds