Wall clock time and date at job start Tue Mar 31 2020 13:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46956 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00245 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00166 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00183 * 179.97438 * 11 10 9 14 14 C 1.46509 * 120.00229 * 179.97438 * 13 11 10 15 15 H 1.09005 * 109.53771 * 324.82492 * 14 13 11 16 16 C 1.53171 * 109.54191 * 84.99841 * 14 13 11 17 17 C 1.53097 * 109.16416 * 176.84791 * 16 14 13 18 18 O 1.42902 * 109.41225 * 302.39449 * 17 16 14 19 19 C 1.42900 * 114.09583 * 61.15862 * 18 17 16 20 20 H 1.08994 * 109.48431 * 58.83575 * 19 18 17 21 21 C 1.50706 * 109.47736 * 178.85389 * 19 18 17 22 22 C 1.38242 * 119.97242 * 39.72961 * 21 19 18 23 23 C 1.38199 * 120.02410 * 179.72438 * 22 21 19 24 24 C 1.38466 * 119.97205 * 0.52305 * 23 22 21 25 25 F 1.35105 * 120.02506 * 179.72517 * 24 23 22 26 26 C 1.38456 * 119.95187 * 359.74810 * 24 23 22 27 27 C 1.38200 * 119.97022 * 359.97438 * 26 24 23 28 28 C 1.53092 * 109.41596 * 298.83558 * 19 18 17 29 29 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 31 31 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 32 32 H 0.97010 * 119.99906 * 359.97438 * 10 9 7 33 33 H 0.97004 * 120.00421 * 0.02562 * 13 11 10 34 34 H 1.08997 * 109.52714 * 296.75809 * 16 14 13 35 35 H 1.09003 * 109.52330 * 56.88419 * 16 14 13 36 36 H 1.08996 * 109.47596 * 62.37758 * 17 16 14 37 37 H 1.08993 * 109.48182 * 182.41245 * 17 16 14 38 38 H 1.07994 * 119.98877 * 359.97427 * 22 21 19 39 39 H 1.08005 * 120.01730 * 180.24876 * 23 22 21 40 40 H 1.07991 * 120.01809 * 179.97438 * 26 24 23 41 41 H 1.07996 * 119.98626 * 180.02562 * 27 26 24 42 42 H 1.08999 * 109.52306 * 297.70558 * 28 19 18 43 43 H 1.09000 * 109.52056 * 177.51584 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0015 11 6 1.7538 -4.8833 -0.0019 12 8 0.5584 -5.1055 -0.0019 13 7 2.6296 -5.9077 -0.0022 14 6 2.1413 -7.2890 -0.0020 15 1 1.2283 -7.3529 0.5901 16 6 1.8514 -7.7301 -1.4399 17 6 1.4173 -9.1982 -1.4374 18 8 2.4413 -9.9953 -0.8389 19 6 2.7219 -9.6592 0.5214 20 1 1.8164 -9.7707 1.1177 21 6 3.7913 -10.5771 1.0554 22 6 4.8590 -10.9339 0.2530 23 6 5.8432 -11.7710 0.7435 24 6 5.7540 -12.2609 2.0355 25 9 6.7127 -13.0837 2.5142 26 6 4.6813 -11.9074 2.8363 27 6 3.7012 -11.0656 2.3456 28 6 3.2085 -8.2097 0.5976 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5574 0.8881 31 1 0.6247 -2.5564 -0.8919 32 1 3.1568 -3.4354 -0.0010 33 1 3.5833 -5.7305 -0.0017 34 1 1.0534 -7.1150 -1.8558 35 1 2.7514 -7.6166 -2.0442 36 1 0.4946 -9.3034 -0.8668 37 1 1.2509 -9.5299 -2.4622 38 1 4.9261 -10.5552 -0.7561 39 1 6.6794 -12.0464 0.1179 40 1 4.6104 -12.2892 3.8440 41 1 2.8646 -10.7893 2.9701 42 1 4.1363 -8.1069 0.0347 43 1 3.3810 -7.9377 1.6389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426434949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:45 Heat of formation + Delta-G solvation = -133.372599 kcal Electronic energy + Delta-G solvation = -26188.560990 eV Core-core repulsion = 22146.515532 eV Total energy + Delta-G solvation = -4042.045458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.90979 -41.49274 -40.61551 -39.30382 -36.74620 -36.04362 -34.51696 -33.64212 -32.41596 -32.08758 -30.08935 -28.64592 -25.78792 -24.89895 -24.59324 -23.99498 -22.55757 -21.78796 -21.43119 -19.94556 -18.76468 -18.63232 -17.84589 -17.67460 -16.93450 -16.77444 -16.59194 -16.48319 -16.10131 -15.74063 -15.57462 -15.50606 -15.18113 -15.04370 -14.68469 -14.46973 -14.37251 -14.22904 -14.10888 -13.96564 -13.25502 -13.09368 -12.95960 -12.60555 -12.52632 -12.37018 -12.01353 -11.94239 -11.91081 -11.57736 -11.36908 -10.93217 -10.76298 -10.70511 -10.33589 -10.06452 -9.72901 -9.59330 -8.79221 -6.54432 0.07005 0.28060 1.56174 1.65136 1.75366 1.84531 2.13592 2.47264 2.56151 2.78097 3.08792 3.27598 3.38034 3.52158 3.72339 3.78905 3.90427 3.97110 4.01564 4.08175 4.16662 4.34380 4.38917 4.43108 4.54585 4.68745 4.74770 4.78808 4.93250 4.96533 4.98267 5.02133 5.04115 5.14352 5.15816 5.26279 5.45142 5.49061 5.49532 5.53245 5.89238 6.04624 6.14737 6.17880 6.36826 7.15373 7.31606 7.61788 8.60232 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.002111 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.399914 B =13261.452793 C =13999.376702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.033 4.033 3 Si 1.130 2.870 4 H -0.287 1.287 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.629 4.629 8 H 0.076 0.924 9 C 0.273 3.727 10 N -0.721 5.721 11 C 0.693 3.307 12 O -0.646 6.646 13 N -0.726 5.726 14 C 0.162 3.838 15 H 0.067 0.933 16 C -0.164 4.164 17 C 0.072 3.928 18 O -0.380 6.380 19 C 0.139 3.861 20 H 0.080 0.920 21 C -0.097 4.097 22 C -0.067 4.067 23 C -0.160 4.160 24 C 0.080 3.920 25 F -0.150 7.150 26 C -0.156 4.156 27 C -0.079 4.079 28 C -0.139 4.139 29 H 0.254 0.746 30 H -0.019 1.019 31 H -0.019 1.019 32 H 0.405 0.595 33 H 0.410 0.590 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.115 0.885 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.091 0.909 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.295 -25.743 1.872 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.232 4.232 3 Si 0.950 3.050 4 H -0.212 1.212 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.666 4.666 8 H 0.094 0.906 9 C 0.149 3.851 10 N -0.375 5.375 11 C 0.393 3.607 12 O -0.529 6.529 13 N -0.383 5.383 14 C 0.057 3.943 15 H 0.085 0.915 16 C -0.203 4.203 17 C -0.006 4.006 18 O -0.299 6.299 19 C 0.081 3.919 20 H 0.098 0.902 21 C -0.097 4.097 22 C -0.085 4.085 23 C -0.178 4.178 24 C 0.061 3.939 25 F -0.129 7.129 26 C -0.175 4.175 27 C -0.097 4.097 28 C -0.177 4.177 29 H 0.063 0.937 30 H -0.001 1.001 31 H -0.001 1.001 32 H 0.241 0.759 33 H 0.247 0.753 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.172 0.828 42 H 0.109 0.891 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.153 -24.485 1.800 27.394 hybrid contribution 0.448 -1.371 0.129 1.448 sum 12.601 -25.856 1.929 28.828 Atomic orbital electron populations 1.70903 1.08247 1.29939 1.47394 1.27653 0.96372 1.07133 0.92019 0.82783 0.73910 0.69987 0.78368 1.21217 1.18843 1.18855 1.22417 0.95568 0.91677 1.56983 0.90622 1.18517 0.88759 0.84579 0.93217 1.45152 1.10744 1.03718 1.77838 1.16304 0.85231 0.81488 0.77702 1.90832 1.16579 1.84882 1.60572 1.44992 1.08986 1.04277 1.79999 1.20853 0.97768 0.79181 0.96516 0.91509 1.22600 1.02678 0.97819 0.97227 1.22581 0.89844 0.88226 0.99899 1.87930 1.57722 1.58632 1.25597 1.20779 0.96099 0.91116 0.83923 0.90233 1.19667 0.96006 0.99263 0.94756 1.21001 0.91834 0.95333 1.00336 1.21360 1.01726 1.00206 0.94523 1.18048 0.88174 0.93550 0.94107 1.91483 1.62530 1.70225 1.88621 1.21320 0.93979 1.00729 1.01463 1.21086 0.98868 0.94955 0.94801 1.22428 0.98707 0.93438 1.03175 0.93685 1.00089 1.00102 0.75928 0.75342 0.92723 0.90068 0.92494 0.86691 0.83838 0.83391 0.83011 0.82825 0.89074 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.65 21.45 0.29 -57.31 16 2 C -0.03 -1.87 5.46 84.66 0.46 -1.41 16 3 Si 1.13 47.69 29.90 68.60 2.05 49.74 16 4 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.63 -34.50 9.28 25.60 0.24 -34.26 16 8 H 0.08 3.79 7.60 -2.91 -0.02 3.77 16 9 C 0.27 14.97 4.74 85.63 0.41 15.38 16 10 N -0.72 -30.77 5.55 -482.31 -2.68 -33.45 16 11 C 0.69 27.99 8.53 179.06 1.53 29.52 16 12 O -0.65 -32.20 16.01 -3.99 -0.06 -32.26 16 13 N -0.73 -19.82 5.09 -457.25 -2.33 -22.15 16 14 C 0.16 3.75 2.54 45.10 0.11 3.87 16 15 H 0.07 1.87 7.59 -2.38 -0.02 1.86 16 16 C -0.16 -3.59 5.71 30.68 0.18 -3.42 16 17 C 0.07 1.23 6.84 72.01 0.49 1.73 16 18 O -0.38 -6.59 9.72 -148.98 -1.45 -8.04 16 19 C 0.14 2.09 2.85 29.88 0.09 2.18 16 20 H 0.08 1.11 8.00 -2.39 -0.02 1.09 16 21 C -0.10 -1.37 4.98 -19.86 -0.10 -1.47 16 22 C -0.07 -0.95 9.35 22.26 0.21 -0.74 16 23 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 24 C 0.08 1.27 7.30 22.38 0.16 1.44 16 25 F -0.15 -2.70 17.27 44.97 0.78 -1.92 16 26 C -0.16 -2.06 10.03 22.31 0.22 -1.84 16 27 C -0.08 -0.98 9.67 22.26 0.22 -0.76 16 28 C -0.14 -2.19 4.87 30.68 0.15 -2.04 16 29 H 0.25 16.36 7.22 -92.71 -0.67 15.69 16 30 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 31 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 32 H 0.41 14.37 8.34 -92.70 -0.77 13.60 16 33 H 0.41 8.42 8.62 -92.71 -0.80 7.62 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.14 1.83 7.77 -2.91 -0.02 1.81 16 39 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.15 1.45 8.06 -2.92 -0.02 1.42 16 41 H 0.15 1.25 8.04 -2.91 -0.02 1.23 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.88 364.84 0.76 -74.11 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -0.43 Total: 25.16 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 4.59 Total: 6.12 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -4.71 Total: -112.91 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.51 Total: -40.30 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.05 Total: 49.74 kcal Total: -74.88 0.76 -74.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426434949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.259 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds