Wall clock time and date at job start Tue Mar 31 2020 13:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00454 * 2 1 4 4 H 1.48499 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47293 * 300.00714 * 3 2 1 6 6 H 1.48500 * 109.47105 * 60.00286 * 3 2 1 7 7 C 1.37883 * 119.99418 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99821 * 173.54656 * 7 2 1 9 9 C 1.50700 * 120.00167 * 353.54490 * 7 2 1 10 10 C 1.52997 * 115.54875 * 85.41127 * 9 7 2 11 11 N 1.46495 * 109.47248 * 65.13940 * 10 9 7 12 12 C 1.34782 * 120.00012 * 178.27958 * 11 10 9 13 13 O 1.21592 * 119.99665 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00196 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00169 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47221 * 35.00343 * 15 14 12 17 17 C 1.53000 * 109.47267 * 275.00099 * 15 14 12 18 18 O 1.42899 * 109.47542 * 295.00053 * 17 15 14 19 19 C 1.50701 * 109.47313 * 155.00254 * 15 14 12 20 20 C 1.38239 * 119.97509 * 220.00272 * 19 15 14 21 21 C 1.38206 * 120.02473 * 180.02562 * 20 19 15 22 22 C 1.38464 * 119.97330 * 0.23273 * 21 20 19 23 23 F 1.35099 * 120.02131 * 179.72673 * 22 21 20 24 24 C 1.38455 * 119.94694 * 359.49477 * 22 21 20 25 25 C 1.38203 * 119.97458 * 0.52281 * 24 22 21 26 26 C 1.53001 * 117.49874 * 231.07831 * 9 7 2 27 27 C 1.52996 * 117.49876 * 299.73977 * 9 7 2 28 28 H 0.97001 * 119.99436 * 5.04955 * 1 2 3 29 29 H 1.09004 * 109.47194 * 305.13723 * 10 9 7 30 30 H 1.09001 * 109.46947 * 185.14166 * 10 9 7 31 31 H 0.96996 * 119.99845 * 358.28409 * 11 10 9 32 32 H 0.97005 * 119.99806 * 0.02562 * 14 12 11 33 33 H 1.09007 * 109.46896 * 55.00497 * 17 15 14 34 34 H 1.09007 * 109.46991 * 174.99384 * 17 15 14 35 35 H 0.96700 * 114.00255 * 179.97438 * 18 17 15 36 36 H 1.08001 * 119.99143 * 0.02562 * 20 19 15 37 37 H 1.07998 * 120.01022 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.01168 * 180.25663 * 24 22 21 39 39 H 1.07996 * 119.98494 * 179.74802 * 25 24 22 40 40 H 1.08997 * 117.49896 * 214.99948 * 26 9 7 41 41 H 1.09001 * 117.49881 * 0.02924 * 26 9 7 42 42 H 1.09004 * 117.50038 * 359.97438 * 27 9 7 43 43 H 1.09000 * 117.50205 * 144.97327 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0793 -1.1972 -0.1057 9 6 1.2580 -2.4951 0.1456 10 6 0.7019 -3.0861 -1.1514 11 7 1.8108 -3.4585 -2.0333 12 6 1.5595 -4.0350 -3.2254 13 8 0.4123 -4.2454 -3.5691 14 7 2.5796 -4.3771 -4.0369 15 6 2.3064 -5.0031 -5.3329 16 1 1.3900 -4.5871 -5.7514 17 6 2.1422 -6.5127 -5.1456 18 8 3.3801 -7.0759 -4.7072 19 6 3.4543 -4.7355 -6.2720 20 6 3.2061 -4.4412 -7.5997 21 6 4.2581 -4.1961 -8.4620 22 6 5.5610 -4.2502 -7.9966 23 9 6.5902 -4.0162 -8.8399 24 6 5.8080 -4.5395 -6.6654 25 6 4.7545 -4.7846 -5.8051 26 6 1.7470 -3.4738 1.2152 27 6 0.4417 -2.7016 1.4230 28 1 -0.4849 0.8368 -0.0739 29 1 0.0751 -2.3457 -1.6486 30 1 0.1072 -3.9704 -0.9221 31 1 2.7259 -3.2904 -1.7592 32 1 3.4948 -4.2089 -3.7628 33 1 1.3712 -6.7044 -4.3992 34 1 1.8515 -6.9669 -6.0930 35 1 3.3496 -8.0323 -4.5673 36 1 2.1899 -4.4027 -7.9634 37 1 4.0640 -3.9666 -9.4993 38 1 6.8237 -4.5779 -6.3004 39 1 4.9472 -5.0143 -4.7675 40 1 1.6723 -4.5387 0.9949 41 1 2.6082 -3.1765 1.8135 42 1 0.4449 -1.8966 2.1580 43 1 -0.4918 -3.2581 1.3394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431054377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:26 Heat of formation + Delta-G solvation = -96.022388 kcal Electronic energy + Delta-G solvation = -26790.445228 eV Core-core repulsion = 22750.019397 eV Total energy + Delta-G solvation = -4040.425831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.89087 -41.31846 -40.07174 -38.56260 -37.70778 -35.54134 -34.90370 -33.94686 -32.26522 -31.84878 -29.11882 -27.88663 -26.87995 -24.42168 -24.11011 -22.95977 -22.16210 -21.42118 -21.13473 -19.50007 -18.65352 -18.26605 -18.14905 -17.50948 -16.95537 -16.70640 -16.59288 -16.45817 -16.17613 -15.80209 -15.63815 -15.16106 -14.93670 -14.76715 -14.46558 -14.41144 -14.28383 -13.87391 -13.58958 -13.43184 -13.33580 -12.92053 -12.86891 -12.80662 -12.32261 -12.25464 -12.01916 -11.93054 -11.49264 -11.29491 -10.87981 -10.83131 -10.44689 -10.27771 -10.03452 -10.03100 -9.63104 -9.52326 -8.08128 -6.20649 0.10324 0.30516 1.41557 1.45638 1.54384 1.82261 2.26429 2.43683 2.62583 3.20302 3.27888 3.34275 3.39531 3.58528 3.64838 3.79120 3.98715 4.18680 4.27782 4.35515 4.42373 4.49600 4.59023 4.63439 4.68736 4.72999 4.77472 4.97860 5.01140 5.02027 5.06093 5.16953 5.26612 5.29992 5.41344 5.61528 5.62845 5.65899 5.74817 5.81372 5.91061 6.15660 6.39458 6.86376 6.92240 7.23564 7.48597 7.70147 8.99552 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013372 B = 0.003154 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.471290 B = 8876.276439 C =10089.035997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.948 3.052 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.006 3.994 10 C 0.201 3.799 11 N -0.716 5.716 12 C 0.699 3.301 13 O -0.642 6.642 14 N -0.724 5.724 15 C 0.206 3.794 16 H 0.098 0.902 17 C 0.076 3.924 18 O -0.573 6.573 19 C -0.100 4.100 20 C -0.082 4.082 21 C -0.155 4.155 22 C 0.080 3.920 23 F -0.149 7.149 24 C -0.157 4.157 25 C -0.062 4.062 26 C -0.176 4.176 27 C -0.159 4.159 28 H 0.258 0.742 29 H 0.026 0.974 30 H 0.033 0.967 31 H 0.405 0.595 32 H 0.406 0.594 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.394 0.606 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 -13.409 -14.059 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.081 0.919 9 C 0.005 3.995 10 C 0.076 3.924 11 N -0.369 5.369 12 C 0.399 3.601 13 O -0.524 6.524 14 N -0.381 5.381 15 C 0.101 3.899 16 H 0.116 0.884 17 C -0.003 4.003 18 O -0.381 6.381 19 C -0.101 4.101 20 C -0.100 4.100 21 C -0.173 4.173 22 C 0.061 3.939 23 F -0.128 7.128 24 C -0.176 4.176 25 C -0.081 4.081 26 C -0.213 4.213 27 C -0.197 4.197 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.240 0.760 32 H 0.243 0.757 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.243 0.757 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.180 -12.838 -14.351 21.331 hybrid contribution 0.689 0.819 0.277 1.105 sum 9.869 -12.019 -14.073 20.974 Atomic orbital electron populations 1.70108 1.07212 1.27182 1.49945 1.25675 0.95427 1.01948 0.94458 0.85669 0.79517 0.80316 0.77082 1.18617 1.21508 1.21105 1.20683 0.93097 0.89590 1.50647 0.91898 1.19055 0.99666 0.94411 0.86329 1.20377 0.86954 0.95178 0.89869 1.44924 1.10964 1.63754 1.17226 1.16128 0.84736 0.78356 0.80858 1.90838 1.21624 1.63720 1.76257 1.44984 1.08244 1.66191 1.18657 1.19761 0.96775 0.91873 0.81476 0.88450 1.22451 0.86266 0.92459 0.99160 1.86411 1.33145 1.28217 1.90319 1.19822 0.94234 1.01517 0.94526 1.21100 1.00221 0.96795 0.91920 1.21305 0.90461 1.03378 1.02177 1.17999 0.84648 1.02759 0.88491 1.91476 1.58194 1.92241 1.70884 1.21315 1.01551 1.02959 0.91761 1.20877 0.90952 0.95862 1.00372 1.22999 0.97331 0.96264 1.04714 1.22432 0.93792 1.01389 1.02102 0.93273 0.95560 0.94857 0.75982 0.75730 0.94406 0.90699 0.75661 0.82974 0.82891 0.83371 0.84166 0.89333 0.89613 0.91841 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.12 12.91 21.45 0.28 -50.84 16 2 C 0.03 1.35 5.39 84.66 0.46 1.81 16 3 Si 0.95 42.16 29.55 68.60 2.03 44.19 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.50 -25.41 8.63 25.60 0.22 -25.19 16 8 H 0.06 3.08 7.82 -2.91 -0.02 3.05 16 9 C 0.01 0.29 1.38 -52.93 -0.07 0.21 16 10 C 0.20 9.18 5.50 86.38 0.48 9.66 16 11 N -0.72 -27.33 5.48 -478.54 -2.62 -29.95 16 12 C 0.70 25.75 8.53 179.05 1.53 27.27 16 13 O -0.64 -28.44 16.01 -4.01 -0.06 -28.51 16 14 N -0.72 -19.51 4.98 -461.42 -2.30 -21.80 16 15 C 0.21 4.71 2.61 44.25 0.12 4.82 16 16 H 0.10 2.47 7.44 -2.39 -0.02 2.45 16 17 C 0.08 1.47 6.84 71.98 0.49 1.97 16 18 O -0.57 -9.68 12.04 -148.98 -1.79 -11.48 16 19 C -0.10 -1.95 4.83 -19.86 -0.10 -2.04 16 20 C -0.08 -1.39 9.67 22.26 0.22 -1.18 16 21 C -0.15 -2.61 10.03 22.32 0.22 -2.39 16 22 C 0.08 1.55 7.30 22.38 0.16 1.72 16 23 F -0.15 -3.13 17.27 44.97 0.78 -2.36 16 24 C -0.16 -2.85 10.03 22.31 0.22 -2.62 16 25 C -0.06 -1.16 8.05 22.26 0.18 -0.98 16 26 C -0.18 -6.88 9.96 30.62 0.30 -6.57 16 27 C -0.16 -7.16 9.42 30.62 0.29 -6.87 16 28 H 0.26 14.06 8.32 -92.71 -0.77 13.28 16 29 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.03 1.50 8.09 -2.39 -0.02 1.48 16 31 H 0.41 13.85 8.38 -92.71 -0.78 13.07 16 32 H 0.41 9.30 6.88 -92.70 -0.64 8.66 16 33 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.39 3.55 9.12 -74.06 -0.68 2.87 16 36 H 0.15 1.96 8.04 -2.91 -0.02 1.94 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.14 2.42 6.67 -2.91 -0.02 2.40 16 40 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.06 3.09 8.14 -2.38 -0.02 3.07 16 43 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -66.65 371.55 -0.01 -66.66 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: -1.03 Total: 34.48 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 4.72 Total: -0.39 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -4.64 Total: -102.59 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.86 Total: -39.98 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -66.65 -0.01 -66.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431054377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.363 kcal (2) G-P(sol) polarization free energy of solvation -66.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds