Wall clock time and date at job start Tue Mar 31 2020 13:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99580 * 2 1 4 4 H 1.48497 * 109.46866 * 239.99782 * 3 2 1 5 5 H 1.48493 * 109.47369 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46943 * 120.00105 * 3 2 1 7 7 C 1.37872 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00296 * 173.55502 * 7 2 1 9 9 C 1.50705 * 119.99741 * 353.55947 * 7 2 1 10 10 C 1.52995 * 115.55086 * 85.40615 * 9 7 2 11 11 N 1.46496 * 109.47546 * 65.13990 * 10 9 7 12 12 C 1.34777 * 120.00528 * 178.29160 * 11 10 9 13 13 O 1.21592 * 119.99660 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00282 * 180.02562 * 12 11 10 15 15 C 1.46504 * 120.00023 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.46968 * 324.99361 * 15 14 12 17 17 C 1.52993 * 109.47349 * 84.99634 * 15 14 12 18 18 O 1.42901 * 109.47094 * 64.99944 * 17 15 14 19 19 C 1.50700 * 109.46921 * 204.99827 * 15 14 12 20 20 C 1.38247 * 119.97576 * 140.00142 * 19 15 14 21 21 C 1.38199 * 120.02953 * 179.97438 * 20 19 15 22 22 C 1.38460 * 119.96774 * 359.97438 * 21 20 19 23 23 F 1.35109 * 120.01976 * 179.97438 * 22 21 20 24 24 C 1.38456 * 119.95343 * 0.25265 * 22 21 20 25 25 C 1.38194 * 119.97198 * 359.47151 * 24 22 21 26 26 C 1.52997 * 117.49695 * 231.07446 * 9 7 2 27 27 C 1.53003 * 117.49603 * 299.73216 * 9 7 2 28 28 H 0.97003 * 120.00307 * 5.06386 * 1 2 3 29 29 H 1.09007 * 109.46941 * 305.14130 * 10 9 7 30 30 H 1.08997 * 109.47372 * 185.14048 * 10 9 7 31 31 H 0.97002 * 120.00030 * 358.28580 * 11 10 9 32 32 H 0.97002 * 120.00277 * 359.97438 * 14 12 11 33 33 H 1.09002 * 109.47135 * 185.00300 * 17 15 14 34 34 H 1.08997 * 109.47107 * 304.99929 * 17 15 14 35 35 H 0.96708 * 113.99983 * 179.97438 * 18 17 15 36 36 H 1.07997 * 119.98524 * 0.02562 * 20 19 15 37 37 H 1.07993 * 120.01565 * 180.02562 * 21 20 19 38 38 H 1.08004 * 120.01415 * 179.75015 * 24 22 21 39 39 H 1.08002 * 119.98680 * 180.29948 * 25 24 22 40 40 H 1.09001 * 117.50161 * 215.00245 * 26 9 7 41 41 H 1.08998 * 117.50197 * 0.02562 * 26 9 7 42 42 H 1.08989 * 117.50066 * 359.97438 * 27 9 7 43 43 H 1.08999 * 117.49247 * 144.97844 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0795 -1.1969 -0.1045 9 6 1.2582 -2.4949 0.1475 10 6 0.7023 -3.0869 -1.1491 11 7 1.8114 -3.4600 -2.0306 12 6 1.5603 -4.0371 -3.2224 13 8 0.4132 -4.2486 -3.5658 14 7 2.5806 -4.3807 -4.0330 15 6 2.3077 -5.0085 -5.3283 16 1 1.4356 -5.6566 -5.2413 17 6 2.0354 -3.9247 -6.3732 18 8 3.2176 -3.1468 -6.5718 19 6 3.5008 -5.8261 -5.7515 20 6 3.3163 -7.0560 -6.3552 21 6 4.4097 -7.8064 -6.7443 22 6 5.6902 -7.3256 -6.5297 23 9 6.7599 -8.0585 -6.9092 24 6 5.8739 -6.0957 -5.9208 25 6 4.7790 -5.3446 -5.5378 26 6 1.7471 -3.4727 1.2179 27 6 0.4418 -2.7005 1.4251 28 1 -0.4851 0.8368 -0.0741 29 1 0.0756 -2.3469 -1.6470 30 1 0.1077 -3.9711 -0.9193 31 1 2.7265 -3.2915 -1.7565 32 1 3.4958 -4.2123 -3.7589 33 1 1.7455 -4.3920 -7.3143 34 1 1.2296 -3.2786 -6.0250 35 1 3.1180 -2.4392 -7.2233 36 1 2.3173 -7.4303 -6.5235 37 1 4.2653 -8.7670 -7.2162 38 1 6.8724 -5.7215 -5.7494 39 1 4.9219 -4.3831 -5.0672 40 1 1.6727 -4.5378 0.9984 41 1 2.6082 -3.1749 1.8161 42 1 0.4448 -1.8951 2.1593 43 1 -0.4916 -3.2572 1.3416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431054378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:29 Heat of formation + Delta-G solvation = -74.906841 kcal Electronic energy + Delta-G solvation = -26786.996628 eV Core-core repulsion = 22747.486436 eV Total energy + Delta-G solvation = -4039.510192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.09164 -40.17165 -38.93733 -37.08738 -36.56112 -34.43288 -33.27220 -31.97747 -31.46287 -30.89373 -28.16905 -26.11577 -25.08100 -23.53021 -23.32468 -21.32466 -21.02076 -20.09791 -19.37179 -18.25044 -17.75338 -17.31507 -16.78186 -16.26372 -15.82763 -15.77940 -15.37166 -14.99521 -14.66782 -14.56271 -14.17700 -14.02421 -13.86678 -13.67973 -13.51751 -13.22232 -12.86570 -12.64600 -12.55022 -12.09217 -11.73836 -11.56659 -11.36818 -11.20147 -11.00194 -10.92417 -10.55377 -10.27157 -10.11227 -9.75708 -9.52702 -9.31664 -8.99247 -8.94836 -8.74726 -8.49604 -8.25950 -7.98570 -6.07825 -4.16469 0.88179 1.02470 3.09530 3.26480 3.32487 3.33901 3.40963 3.75316 4.03715 4.21287 4.34831 4.42440 4.51284 4.66405 4.78029 5.03695 5.08884 5.20308 5.22632 5.30928 5.35573 5.52977 5.60702 5.71066 5.81285 5.89081 6.02192 6.03697 6.26390 6.34571 6.47165 6.59620 6.64888 6.69915 6.73516 6.85311 7.08989 7.31875 7.41182 7.46483 7.54584 7.59256 7.81086 8.34136 8.63752 8.83995 9.17334 9.50228 10.99950 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.002857 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.822588 B = 9798.152938 C =10020.280294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.183 3.817 11 N -0.718 5.718 12 C 0.700 3.300 13 O -0.606 6.606 14 N -0.742 5.742 15 C 0.212 3.788 16 H 0.109 0.891 17 C 0.066 3.934 18 O -0.566 6.566 19 C -0.094 4.094 20 C -0.081 4.081 21 C -0.156 4.156 22 C 0.095 3.905 23 F -0.143 7.143 24 C -0.155 4.155 25 C -0.058 4.058 26 C -0.211 4.211 27 C -0.147 4.147 28 H 0.262 0.738 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.396 0.604 32 H 0.395 0.605 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.377 0.623 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.290 -11.585 -13.763 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.370 5.370 12 C 0.400 3.600 13 O -0.486 6.486 14 N -0.399 5.399 15 C 0.105 3.895 16 H 0.127 0.873 17 C -0.013 4.013 18 O -0.371 6.371 19 C -0.095 4.095 20 C -0.100 4.100 21 C -0.174 4.174 22 C 0.075 3.925 23 F -0.122 7.122 24 C -0.173 4.173 25 C -0.077 4.077 26 C -0.248 4.248 27 C -0.186 4.186 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.230 0.770 32 H 0.230 0.770 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.224 0.776 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.290 -12.066 -13.521 19.533 hybrid contribution 1.210 1.411 -0.291 1.882 sum 8.500 -10.655 -13.812 19.405 Atomic orbital electron populations 1.69963 1.05880 1.27019 1.48167 1.24975 0.94792 0.98902 0.94302 0.86698 0.79661 0.83227 0.78622 1.20271 1.21305 1.20209 1.20297 0.92773 0.88651 1.52113 0.92295 1.19030 0.98582 0.93867 0.85744 1.20849 0.86579 0.96627 0.90038 1.45138 1.11381 1.63369 1.17117 1.16019 0.84479 0.78770 0.80737 1.90863 1.19796 1.62085 1.75858 1.45106 1.08806 1.67431 1.18547 1.19612 0.95723 0.92026 0.82111 0.87343 1.22638 0.87817 0.93524 0.97302 1.86448 1.36022 1.49182 1.65485 1.19913 0.94764 0.94824 0.99966 1.20877 0.98882 0.93144 0.97082 1.21068 0.90938 1.01630 1.03811 1.17763 0.83467 0.91159 1.00077 1.91495 1.54714 1.76699 1.89265 1.21159 1.00670 0.93955 1.01548 1.20846 0.90858 0.99003 0.96946 1.23020 0.98642 0.95688 1.07456 1.22489 0.92290 1.01072 1.02720 0.92798 0.91219 0.94714 0.77049 0.76979 0.93103 0.92092 0.77618 0.84792 0.84759 0.84723 0.84540 0.91643 0.90412 0.89835 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.11 12.91 55.43 0.72 -23.39 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 20.43 29.55 -169.99 -5.02 15.40 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.50 -12.76 8.63 -34.44 -0.30 -13.06 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 9 C 0.03 0.66 1.38 -155.66 -0.21 0.45 16 10 C 0.18 4.13 5.50 -4.05 -0.02 4.11 16 11 N -0.72 -13.87 5.48 -65.23 -0.36 -14.22 16 12 C 0.70 12.99 8.53 -86.93 -0.74 12.25 16 13 O -0.61 -13.27 16.01 5.28 0.08 -13.19 16 14 N -0.74 -10.39 4.98 -59.82 -0.30 -10.69 16 15 C 0.21 2.54 2.61 -69.08 -0.18 2.36 16 16 H 0.11 1.37 7.44 -51.93 -0.39 0.98 16 17 C 0.07 0.74 6.84 37.15 0.25 1.00 16 18 O -0.57 -5.97 12.03 -35.23 -0.42 -6.39 16 19 C -0.09 -0.97 4.83 -104.62 -0.51 -1.48 16 20 C -0.08 -0.74 9.67 -39.59 -0.38 -1.12 16 21 C -0.16 -1.41 10.03 -39.51 -0.40 -1.81 16 22 C 0.09 0.97 7.30 -39.42 -0.29 0.68 16 23 F -0.14 -1.55 17.27 2.25 0.04 -1.52 16 24 C -0.15 -1.51 10.03 -39.52 -0.40 -1.90 16 25 C -0.06 -0.59 8.04 -39.59 -0.32 -0.91 16 26 C -0.21 -4.34 9.96 -26.69 -0.27 -4.61 16 27 C -0.15 -3.34 9.42 -26.69 -0.25 -3.60 16 28 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 29 H 0.07 1.82 8.14 -51.92 -0.42 1.39 16 30 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.40 7.01 8.38 -40.82 -0.34 6.67 16 32 H 0.40 4.85 6.89 -40.82 -0.28 4.57 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.38 2.60 9.12 45.56 0.42 3.02 16 36 H 0.13 0.95 8.04 -52.49 -0.42 0.53 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.14 1.35 6.67 -52.49 -0.35 1.00 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.08 2.01 8.14 -51.94 -0.42 1.59 16 43 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -30.89 371.55 -8.90 -39.79 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -5.14 Total: 14.39 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -4.10 Total: -5.78 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.06 Total: -48.31 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.34 Total: -19.58 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.89 -8.90 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431054378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.120 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds