Wall clock time and date at job start Tue Mar 31 2020 13:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99580 * 2 1 4 4 H 1.48497 * 109.46866 * 239.99782 * 3 2 1 5 5 H 1.48493 * 109.47369 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46943 * 120.00105 * 3 2 1 7 7 C 1.37872 * 120.00465 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00296 * 173.55502 * 7 2 1 9 9 C 1.50705 * 119.99741 * 353.55947 * 7 2 1 10 10 C 1.52995 * 115.55086 * 85.40615 * 9 7 2 11 11 N 1.46496 * 109.47546 * 65.13990 * 10 9 7 12 12 C 1.34777 * 120.00528 * 178.29160 * 11 10 9 13 13 O 1.21592 * 119.99660 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00282 * 180.02562 * 12 11 10 15 15 C 1.46504 * 120.00023 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.46968 * 324.99361 * 15 14 12 17 17 C 1.52993 * 109.47349 * 84.99634 * 15 14 12 18 18 O 1.42901 * 109.47094 * 64.99944 * 17 15 14 19 19 C 1.50700 * 109.46921 * 204.99827 * 15 14 12 20 20 C 1.38247 * 119.97576 * 140.00142 * 19 15 14 21 21 C 1.38199 * 120.02953 * 179.97438 * 20 19 15 22 22 C 1.38460 * 119.96774 * 359.97438 * 21 20 19 23 23 F 1.35109 * 120.01976 * 179.97438 * 22 21 20 24 24 C 1.38456 * 119.95343 * 0.25265 * 22 21 20 25 25 C 1.38194 * 119.97198 * 359.47151 * 24 22 21 26 26 C 1.52997 * 117.49695 * 231.07446 * 9 7 2 27 27 C 1.53003 * 117.49603 * 299.73216 * 9 7 2 28 28 H 0.97003 * 120.00307 * 5.06386 * 1 2 3 29 29 H 1.09007 * 109.46941 * 305.14130 * 10 9 7 30 30 H 1.08997 * 109.47372 * 185.14048 * 10 9 7 31 31 H 0.97002 * 120.00030 * 358.28580 * 11 10 9 32 32 H 0.97002 * 120.00277 * 359.97438 * 14 12 11 33 33 H 1.09002 * 109.47135 * 185.00300 * 17 15 14 34 34 H 1.08997 * 109.47107 * 304.99929 * 17 15 14 35 35 H 0.96708 * 113.99983 * 179.97438 * 18 17 15 36 36 H 1.07997 * 119.98524 * 0.02562 * 20 19 15 37 37 H 1.07993 * 120.01565 * 180.02562 * 21 20 19 38 38 H 1.08004 * 120.01415 * 179.75015 * 24 22 21 39 39 H 1.08002 * 119.98680 * 180.29948 * 25 24 22 40 40 H 1.09001 * 117.50161 * 215.00245 * 26 9 7 41 41 H 1.08998 * 117.50197 * 0.02562 * 26 9 7 42 42 H 1.08989 * 117.50066 * 359.97438 * 27 9 7 43 43 H 1.08999 * 117.49247 * 144.97844 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0795 -1.1969 -0.1045 9 6 1.2582 -2.4949 0.1475 10 6 0.7023 -3.0869 -1.1491 11 7 1.8114 -3.4600 -2.0306 12 6 1.5603 -4.0371 -3.2224 13 8 0.4132 -4.2486 -3.5658 14 7 2.5806 -4.3807 -4.0330 15 6 2.3077 -5.0085 -5.3283 16 1 1.4356 -5.6566 -5.2413 17 6 2.0354 -3.9247 -6.3732 18 8 3.2176 -3.1468 -6.5718 19 6 3.5008 -5.8261 -5.7515 20 6 3.3163 -7.0560 -6.3552 21 6 4.4097 -7.8064 -6.7443 22 6 5.6902 -7.3256 -6.5297 23 9 6.7599 -8.0585 -6.9092 24 6 5.8739 -6.0957 -5.9208 25 6 4.7790 -5.3446 -5.5378 26 6 1.7471 -3.4727 1.2179 27 6 0.4418 -2.7005 1.4251 28 1 -0.4851 0.8368 -0.0741 29 1 0.0756 -2.3469 -1.6470 30 1 0.1077 -3.9711 -0.9193 31 1 2.7265 -3.2915 -1.7565 32 1 3.4958 -4.2123 -3.7589 33 1 1.7455 -4.3920 -7.3143 34 1 1.2296 -3.2786 -6.0250 35 1 3.1180 -2.4392 -7.2233 36 1 2.3173 -7.4303 -6.5235 37 1 4.2653 -8.7670 -7.2162 38 1 6.8724 -5.7215 -5.7494 39 1 4.9219 -4.3831 -5.0672 40 1 1.6727 -4.5378 0.9984 41 1 2.6082 -3.1749 1.8161 42 1 0.4448 -1.8951 2.1593 43 1 -0.4916 -3.2572 1.3416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431054378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:29 Heat of formation + Delta-G solvation = -95.913461 kcal Electronic energy + Delta-G solvation = -26787.907543 eV Core-core repulsion = 22747.486436 eV Total energy + Delta-G solvation = -4040.421107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88072 -41.32051 -40.07154 -38.56425 -37.72050 -35.54793 -34.90619 -33.94751 -32.26306 -31.84531 -29.12396 -27.88680 -26.88222 -24.42692 -24.10185 -22.96286 -22.16073 -21.42407 -21.13152 -19.50187 -18.64996 -18.28218 -18.15794 -17.49194 -16.95036 -16.68377 -16.57329 -16.48139 -16.20992 -15.80377 -15.65152 -15.15394 -14.89446 -14.76807 -14.50922 -14.41014 -14.27633 -13.85643 -13.55750 -13.47717 -13.34506 -12.92258 -12.84076 -12.76918 -12.37955 -12.25844 -12.02247 -11.92358 -11.49537 -11.30061 -10.90468 -10.83639 -10.43710 -10.28792 -10.03739 -10.01553 -9.63826 -9.51847 -8.07595 -6.20601 0.10754 0.31119 1.44532 1.46023 1.52297 1.81785 2.26060 2.44106 2.63295 3.20471 3.28417 3.33633 3.39054 3.58451 3.64466 3.79722 3.99479 4.17896 4.27545 4.36100 4.42572 4.47336 4.58982 4.63374 4.68286 4.71701 4.77354 4.98660 5.01326 5.01749 5.05834 5.17669 5.27338 5.29662 5.41632 5.61398 5.62711 5.65761 5.74538 5.81006 5.91575 6.15355 6.39360 6.85956 6.88340 7.23174 7.48650 7.69823 8.99694 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.002857 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.822588 B = 9798.152938 C =10020.280294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.007 3.993 10 C 0.201 3.799 11 N -0.716 5.716 12 C 0.699 3.301 13 O -0.641 6.641 14 N -0.724 5.724 15 C 0.208 3.792 16 H 0.102 0.898 17 C 0.072 3.928 18 O -0.574 6.574 19 C -0.099 4.099 20 C -0.080 4.080 21 C -0.153 4.153 22 C 0.081 3.919 23 F -0.149 7.149 24 C -0.157 4.157 25 C -0.063 4.063 26 C -0.177 4.177 27 C -0.159 4.159 28 H 0.259 0.741 29 H 0.026 0.974 30 H 0.033 0.967 31 H 0.405 0.595 32 H 0.406 0.594 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.393 0.607 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.137 0.863 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.059 -12.596 -14.551 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.006 3.994 10 C 0.076 3.924 11 N -0.369 5.369 12 C 0.399 3.601 13 O -0.524 6.524 14 N -0.381 5.381 15 C 0.103 3.897 16 H 0.120 0.880 17 C -0.007 4.007 18 O -0.382 6.382 19 C -0.100 4.100 20 C -0.098 4.098 21 C -0.172 4.172 22 C 0.062 3.938 23 F -0.128 7.128 24 C -0.176 4.176 25 C -0.082 4.082 26 C -0.214 4.214 27 C -0.197 4.197 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.240 0.760 32 H 0.242 0.758 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.243 0.757 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.126 -13.083 -14.337 21.448 hybrid contribution 0.694 1.675 -0.101 1.816 sum 9.820 -11.408 -14.438 20.857 Atomic orbital electron populations 1.70093 1.07236 1.27352 1.49785 1.25681 0.95431 1.01983 0.94398 0.85765 0.78389 0.79533 0.78816 1.19675 1.21792 1.19575 1.20627 0.93093 0.89631 1.50934 0.91909 1.19044 0.99632 0.94382 0.86303 1.20381 0.86950 0.95180 0.89880 1.44925 1.10965 1.63689 1.17295 1.16129 0.84752 0.78483 0.80715 1.90837 1.21604 1.63458 1.76522 1.44989 1.08257 1.66248 1.18593 1.19758 0.96440 0.92425 0.81122 0.87979 1.22501 0.87163 0.92976 0.98066 1.86406 1.35546 1.49874 1.66369 1.19793 0.94009 0.95281 1.00893 1.21097 0.99980 0.92451 0.96277 1.21306 0.90336 1.02332 1.03194 1.17996 0.83807 0.91450 1.00562 1.91481 1.55073 1.76844 1.89389 1.21297 1.01215 0.93838 1.01244 1.20861 0.90906 0.99151 0.97249 1.23002 0.97353 0.96280 1.04769 1.22433 0.93779 1.01379 1.02127 0.93242 0.95543 0.94847 0.75997 0.75751 0.90514 0.94952 0.75748 0.82781 0.82754 0.83502 0.84513 0.89349 0.89642 0.91826 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.09 12.91 21.44 0.28 -50.81 16 2 C 0.03 1.36 5.39 84.65 0.46 1.82 16 3 Si 0.95 41.94 29.55 68.60 2.03 43.96 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.51 -25.57 8.63 25.60 0.22 -25.35 16 8 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 9 C 0.01 0.33 1.38 -52.93 -0.07 0.26 16 10 C 0.20 9.20 5.50 86.38 0.48 9.67 16 11 N -0.72 -27.44 5.48 -478.55 -2.62 -30.06 16 12 C 0.70 25.83 8.53 179.06 1.53 27.36 16 13 O -0.64 -28.47 16.01 -4.01 -0.06 -28.54 16 14 N -0.72 -19.61 4.98 -461.42 -2.30 -21.91 16 15 C 0.21 4.74 2.61 44.24 0.12 4.86 16 16 H 0.10 2.49 7.44 -2.39 -0.02 2.47 16 17 C 0.07 1.54 6.84 71.98 0.49 2.03 16 18 O -0.57 -11.21 12.03 -148.98 -1.79 -13.00 16 19 C -0.10 -1.86 4.83 -19.86 -0.10 -1.96 16 20 C -0.08 -1.25 9.67 22.26 0.22 -1.04 16 21 C -0.15 -2.39 10.03 22.31 0.22 -2.17 16 22 C 0.08 1.49 7.30 22.37 0.16 1.66 16 23 F -0.15 -3.00 17.27 44.97 0.78 -2.22 16 24 C -0.16 -2.77 10.03 22.31 0.22 -2.55 16 25 C -0.06 -1.17 8.04 22.26 0.18 -0.99 16 26 C -0.18 -6.96 9.96 30.62 0.30 -6.66 16 27 C -0.16 -7.19 9.42 30.62 0.29 -6.90 16 28 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 29 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.03 1.51 8.09 -2.39 -0.02 1.49 16 31 H 0.41 13.91 8.38 -92.71 -0.78 13.14 16 32 H 0.41 9.38 6.89 -92.71 -0.64 8.74 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.39 4.78 9.12 -74.05 -0.68 4.10 16 36 H 0.15 1.75 8.04 -2.91 -0.02 1.72 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.14 2.46 6.67 -2.91 -0.02 2.44 16 40 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.09 3.24 8.14 -2.39 -0.02 3.23 16 42 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -66.44 371.55 0.00 -66.45 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -1.03 Total: 36.07 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 4.72 Total: 0.05 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -4.64 Total: -102.78 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.86 Total: -41.54 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.22 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -66.44 0.00 -66.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431054378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.465 kcal (2) G-P(sol) polarization free energy of solvation -66.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds