Wall clock time and date at job start Tue Mar 31 2020 13:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00237 * 2 1 4 4 H 1.48506 * 109.47207 * 274.24684 * 3 2 1 5 5 H 1.48501 * 109.46812 * 34.24203 * 3 2 1 6 6 H 1.48495 * 109.47489 * 154.24345 * 3 2 1 7 7 C 1.37880 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99610 * 353.14934 * 7 2 1 9 9 C 1.50693 * 120.00170 * 173.41873 * 7 2 1 10 10 C 1.52999 * 115.55495 * 302.18920 * 9 7 2 11 11 N 1.46498 * 109.47291 * 294.74745 * 10 9 7 12 12 C 1.34778 * 120.00433 * 184.73849 * 11 10 9 13 13 O 1.21557 * 119.99363 * 4.84866 * 12 11 10 14 14 C 1.47856 * 120.00250 * 184.84734 * 12 11 10 15 15 C 1.39620 * 120.49982 * 5.08492 * 14 12 11 16 16 N 1.31699 * 120.82608 * 179.69373 * 15 14 12 17 17 C 1.31804 * 122.01433 * 0.59801 * 16 15 14 18 18 C 1.39403 * 120.91680 * 359.69103 * 17 16 15 19 19 C 1.48404 * 120.46778 * 179.97438 * 18 17 16 20 20 C 1.39333 * 120.12097 * 179.74466 * 19 18 17 21 21 C 1.38017 * 119.88324 * 179.76586 * 20 19 18 22 22 C 1.38321 * 120.11654 * 0.53630 * 21 20 19 23 23 C 1.38320 * 120.24347 * 359.69853 * 22 21 20 24 24 C 1.38018 * 120.12007 * 0.04267 * 23 22 21 25 25 C 1.39508 * 119.06099 * 0.02562 * 18 17 16 26 26 C 1.53007 * 117.49895 * 156.51739 * 9 7 2 27 27 C 1.53004 * 117.49899 * 87.86210 * 9 7 2 28 28 H 0.97001 * 119.99925 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46832 * 54.74675 * 10 9 7 30 30 H 1.08996 * 109.47690 * 174.74455 * 10 9 7 31 31 H 0.97002 * 119.99641 * 4.74182 * 11 10 9 32 32 H 1.07996 * 119.58909 * 359.97438 * 15 14 12 33 33 H 1.08000 * 119.54136 * 179.67761 * 17 16 15 34 34 H 1.08000 * 120.05670 * 0.02562 * 20 19 18 35 35 H 1.07997 * 119.94739 * 180.27252 * 21 20 19 36 36 H 1.08005 * 119.88216 * 179.71836 * 22 21 20 37 37 H 1.08002 * 119.93980 * 180.02562 * 23 22 21 38 38 H 1.08004 * 120.05977 * 180.02562 * 24 23 22 39 39 H 1.07997 * 120.90802 * 179.97438 * 25 18 17 40 40 H 1.08999 * 117.49751 * 0.02562 * 26 9 7 41 41 H 1.09003 * 117.49582 * 145.02381 * 26 9 7 42 42 H 1.08996 * 117.50231 * 214.98051 * 27 9 7 43 43 H 1.09005 * 117.49531 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4069 2.0982 -1.3963 5 1 1.4943 2.6250 0.7878 6 1 3.5887 1.4159 0.6084 7 6 2.0046 -1.1940 0.0005 8 1 1.4703 -2.1260 0.1125 9 6 3.5040 -1.1984 -0.1490 10 6 4.0427 -0.5337 -1.4174 11 7 3.6110 -1.2979 -2.5904 12 6 4.0478 -0.9527 -3.8178 13 8 4.8679 -0.0643 -3.9434 14 6 3.5295 -1.6547 -5.0114 15 6 2.5114 -2.6024 -4.8898 16 7 2.0409 -3.2271 -5.9494 17 6 2.5098 -2.9999 -7.1601 18 6 3.5302 -2.0738 -7.3708 19 6 4.0511 -1.8262 -8.7382 20 6 5.0676 -0.8951 -8.9412 21 6 5.5517 -0.6722 -10.2144 22 6 5.0220 -1.3632 -11.2892 23 6 4.0095 -2.2851 -11.0940 24 6 3.5216 -2.5197 -9.8245 25 6 4.0555 -1.3839 -6.2780 26 6 4.2643 -2.4119 0.3900 27 6 4.3415 -1.0716 1.1252 28 1 -0.4850 0.8401 -0.0004 29 1 3.6586 0.4842 -1.4854 30 1 5.1318 -0.5092 -1.3805 31 1 3.0107 -2.0523 -2.4836 32 1 2.1016 -2.8227 -3.9152 33 1 2.0979 -3.5388 -8.0005 34 1 5.4788 -0.3518 -8.1033 35 1 6.3425 0.0461 -10.3723 36 1 5.4005 -1.1824 -12.2844 37 1 3.5997 -2.8222 -11.9367 38 1 2.7312 -3.2401 -9.6732 39 1 4.8468 -0.6603 -6.4070 40 1 3.6797 -3.2073 0.8523 41 1 5.1484 -2.7364 -0.1589 42 1 5.2763 -0.5148 1.0598 43 1 3.8077 -0.9845 2.0716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431137354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:32 Heat of formation + Delta-G solvation = 50.849030 kcal Electronic energy + Delta-G solvation = -25530.093919 eV Core-core repulsion = 21926.806135 eV Total energy + Delta-G solvation = -3603.287784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77153 -39.37586 -38.58922 -37.04554 -33.94394 -33.38542 -32.30566 -32.25476 -31.17223 -29.40318 -27.15452 -25.51665 -24.46165 -24.11296 -22.33866 -21.78623 -21.60591 -20.07272 -19.35415 -18.20359 -17.13262 -16.82195 -16.69428 -16.19513 -15.39742 -15.39320 -15.09562 -14.69470 -14.59726 -14.16308 -13.95546 -13.91600 -13.74496 -13.15722 -13.08948 -13.01617 -12.95046 -12.45391 -12.36164 -12.18215 -11.65169 -11.27468 -11.11449 -10.73580 -10.61855 -10.45212 -10.34427 -10.08256 -9.64841 -9.62366 -9.40183 -9.25912 -9.25770 -8.92084 -8.54802 -8.45881 -8.35588 -6.23657 -4.25689 0.27138 0.78310 1.10008 1.58191 3.01020 3.23209 3.34356 3.39063 3.46838 3.53240 3.93721 4.12381 4.32069 4.32628 4.50759 4.65125 4.66000 4.72188 4.76107 4.85973 5.01876 5.07541 5.16276 5.16700 5.31155 5.36843 5.59939 5.65155 5.72782 5.80443 5.88293 5.95939 6.07770 6.12347 6.14011 6.20476 6.30432 6.38625 6.41586 6.43329 6.64353 6.65541 6.83081 6.94560 7.07091 7.60631 7.74293 7.97348 8.35377 8.53350 8.78515 9.39692 10.87111 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.002801 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.085200 B = 9993.703024 C =10171.184854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.084 3.916 3 Si 0.868 3.132 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.492 4.492 8 H 0.080 0.920 9 C -0.017 4.017 10 C 0.151 3.849 11 N -0.691 5.691 12 C 0.554 3.446 13 O -0.551 6.551 14 C -0.172 4.172 15 C 0.139 3.861 16 N -0.480 5.480 17 C 0.126 3.874 18 C -0.111 4.111 19 C -0.037 4.037 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.012 4.012 26 C -0.180 4.180 27 C -0.188 4.188 28 H 0.267 0.733 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.408 0.592 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.655 -5.104 -19.237 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.120 4.120 3 Si 0.696 3.304 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.176 1.176 7 C -0.529 4.529 8 H 0.098 0.902 9 C -0.019 4.019 10 C 0.029 3.971 11 N -0.341 5.341 12 C 0.339 3.661 13 O -0.430 6.430 14 C -0.177 4.177 15 C -0.019 4.019 16 N -0.187 5.187 17 C -0.031 4.031 18 C -0.113 4.113 19 C -0.038 4.038 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.038 4.038 26 C -0.218 4.218 27 C -0.226 4.226 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.244 0.756 32 H 0.186 0.814 33 H 0.178 0.822 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.166 0.834 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.358 -4.958 -19.147 21.472 hybrid contribution 0.682 1.322 0.026 1.488 sum 9.040 -3.635 -19.121 21.461 Atomic orbital electron populations 1.69884 1.06340 1.27372 1.48805 1.24917 0.94518 0.99033 0.93534 0.87046 0.81337 0.83715 0.78322 1.20426 1.21845 1.17580 1.20259 0.86608 0.94744 1.51316 0.90202 1.19589 0.94853 0.97775 0.89644 1.21186 0.97172 0.94645 0.84148 1.45794 1.48681 1.34035 1.05554 1.17997 0.81804 0.83188 0.83110 1.90734 1.33734 1.32082 1.86495 1.21072 1.00654 1.00975 0.95039 1.23257 0.90824 0.89529 0.98249 1.67716 1.27162 1.24949 0.98860 1.23074 0.91614 0.93484 0.94971 1.19700 0.99063 0.99525 0.92984 1.18599 0.96651 0.97288 0.91251 1.21323 0.96225 0.97453 0.97727 1.21119 1.00011 0.99774 0.92474 1.21247 0.96937 0.96637 0.98992 1.21092 0.97151 0.98404 0.96876 1.21218 0.99954 0.99562 0.92106 1.21771 0.96577 0.95392 0.90090 1.22794 1.01724 0.91939 1.05304 1.23070 1.01174 0.99937 0.98445 0.92351 0.92346 0.92677 0.75575 0.81439 0.82215 0.85431 0.85703 0.85971 0.85714 0.85497 0.83397 0.89529 0.90837 0.91115 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 2 C 0.08 2.28 5.46 -17.82 -0.10 2.18 16 3 Si 0.87 21.08 24.64 -169.99 -4.19 16.89 16 4 H -0.28 -6.89 6.96 56.52 0.39 -6.50 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.25 -5.78 6.18 56.52 0.35 -5.43 16 7 C -0.49 -12.57 9.20 -34.44 -0.32 -12.89 16 8 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 9 C -0.02 -0.37 0.85 -155.66 -0.13 -0.51 16 10 C 0.15 3.18 5.07 -4.04 -0.02 3.16 16 11 N -0.69 -13.03 5.42 -61.25 -0.33 -13.36 16 12 C 0.55 10.25 7.77 -12.32 -0.10 10.16 16 13 O -0.55 -11.65 16.41 5.32 0.09 -11.57 16 14 C -0.17 -2.67 5.89 -104.87 -0.62 -3.28 16 15 C 0.14 2.02 10.68 -17.09 -0.18 1.84 16 16 N -0.48 -6.71 10.33 -12.65 -0.13 -6.84 16 17 C 0.13 1.48 10.59 -17.13 -0.18 1.30 16 18 C -0.11 -1.33 5.89 -104.80 -0.62 -1.94 16 19 C -0.04 -0.39 5.88 -104.90 -0.62 -1.01 16 20 C -0.11 -1.09 9.44 -39.26 -0.37 -1.46 16 21 C -0.12 -0.97 10.03 -39.63 -0.40 -1.37 16 22 C -0.12 -0.91 10.04 -39.52 -0.40 -1.31 16 23 C -0.12 -0.89 10.03 -39.63 -0.40 -1.29 16 24 C -0.11 -0.96 9.44 -39.26 -0.37 -1.33 16 25 C -0.01 -0.17 9.07 -38.53 -0.35 -0.52 16 26 C -0.18 -3.36 9.96 -26.69 -0.27 -3.62 16 27 C -0.19 -3.73 8.80 -26.69 -0.23 -3.96 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.06 1.36 4.13 -51.93 -0.21 1.14 16 30 H 0.05 1.10 8.06 -51.93 -0.42 0.68 16 31 H 0.41 7.09 6.46 -40.82 -0.26 6.82 16 32 H 0.17 2.28 6.48 -52.49 -0.34 1.94 16 33 H 0.16 1.36 6.21 -52.49 -0.33 1.04 16 34 H 0.13 1.21 6.27 -52.49 -0.33 0.88 16 35 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.13 0.85 6.23 -52.48 -0.33 0.52 16 39 H 0.15 1.94 6.00 -52.49 -0.32 1.62 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -31.20 358.02 -9.17 -40.37 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.11 Total: 9.87 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -5.66 Total: -15.85 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.31 Total: -45.10 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.19 Total: 16.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.20 -9.17 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431137354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.215 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds