Wall clock time and date at job start Tue Mar 31 2020 13:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00016 * 2 1 4 4 H 1.48504 * 109.47008 * 269.99707 * 3 2 1 5 5 H 1.48495 * 109.46943 * 29.99776 * 3 2 1 6 6 H 1.48497 * 109.47118 * 150.00185 * 3 2 1 7 7 C 1.38948 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00602 * 359.97438 * 7 2 1 9 9 N 1.37106 * 120.00224 * 179.97438 * 7 2 1 10 10 C 1.34767 * 119.99943 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00654 * 359.72784 * 10 9 7 12 12 C 1.50705 * 119.99936 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47568 * 173.94597 * 12 10 9 14 14 C 1.47913 * 110.99944 * 284.23965 * 13 12 10 15 15 C 1.54605 * 102.62141 * 265.48351 * 14 13 12 16 16 H 1.09002 * 110.73619 * 92.80184 * 15 14 13 17 17 C 1.50693 * 110.73814 * 216.12808 * 15 14 13 18 18 C 1.38238 * 120.00271 * 54.59863 * 17 15 14 19 19 C 1.38233 * 120.00115 * 179.80338 * 18 17 15 20 20 C 1.38237 * 120.00129 * 0.40342 * 19 18 17 21 21 C 1.38232 * 119.99629 * 359.85096 * 20 19 18 22 22 C 1.38231 * 120.00635 * 359.95682 * 21 20 19 23 23 C 1.51576 * 102.83727 * 334.46777 * 15 14 13 24 24 C 1.37914 * 131.56218 * 196.34834 * 23 15 14 25 25 C 1.38304 * 120.07788 * 179.28113 * 24 23 15 26 26 C 1.38299 * 119.88483 * 359.97438 * 25 24 23 27 27 C 1.37905 * 120.26654 * 0.12223 * 26 25 24 28 28 C 1.38968 * 107.95217 * 15.93143 * 23 15 14 29 29 H 0.96995 * 120.00234 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99566 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46684 * 293.94333 * 12 10 9 32 32 H 1.09000 * 109.47386 * 53.94254 * 12 10 9 33 33 H 1.09000 * 110.78186 * 23.76496 * 14 13 12 34 34 H 1.08998 * 110.78388 * 147.20141 * 14 13 12 35 35 H 1.08002 * 119.99802 * 359.97438 * 18 17 15 36 36 H 1.07999 * 120.00096 * 180.22589 * 19 18 17 37 37 H 1.07998 * 120.00354 * 179.83000 * 20 19 18 38 38 H 1.08001 * 119.99810 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.00503 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.96239 * 359.27941 * 24 23 15 41 41 H 1.08003 * 120.05511 * 180.02562 * 25 24 23 42 42 H 1.08010 * 119.86589 * 180.14793 * 26 25 24 43 43 H 1.07999 * 119.89934 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0074 12 6 5.5607 -2.3705 0.0011 13 7 6.0505 -3.7476 0.1483 14 6 5.9069 -4.2147 1.5444 15 6 7.2954 -3.9037 2.1491 16 1 7.3000 -2.9204 2.6195 17 6 7.6994 -4.9701 3.1342 18 6 7.7152 -6.2974 2.7483 19 6 8.0897 -7.2752 3.6508 20 6 8.4404 -6.9266 4.9417 21 6 8.4195 -5.5999 5.3291 22 6 8.0489 -4.6216 4.4256 23 6 8.2032 -3.9224 0.9354 24 6 9.5747 -4.0106 0.8199 25 6 10.1656 -4.0217 -0.4305 26 6 9.3789 -3.9448 -1.5652 27 6 8.0072 -3.8544 -1.4552 28 6 7.4041 -3.8387 -0.1985 29 1 -0.4850 0.8400 -0.0004 30 1 3.8649 -0.3633 -0.0004 31 1 5.9240 -1.9543 -0.9386 32 1 5.9241 -1.7649 0.8313 33 1 5.1263 -3.6561 2.0608 34 1 5.7028 -5.2850 1.5751 35 1 7.4375 -6.5702 1.7409 36 1 8.1055 -8.3119 3.3482 37 1 8.7303 -7.6908 5.6476 38 1 8.6932 -5.3275 6.3378 39 1 8.0322 -3.5851 4.7284 40 1 10.1879 -4.0710 1.7068 41 1 11.2397 -4.0912 -0.5205 42 1 9.8406 -3.9559 -2.5416 43 1 7.3984 -3.7950 -2.3453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444773756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:52 Heat of formation + Delta-G solvation = 43.346381 kcal Electronic energy + Delta-G solvation = -26205.366732 eV Core-core repulsion = 22601.753609 eV Total energy + Delta-G solvation = -3603.613123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18879 -39.05169 -38.27832 -36.52573 -34.01038 -33.43284 -31.68031 -31.03472 -30.48714 -29.88184 -28.44056 -26.75029 -24.30498 -23.28318 -22.64876 -22.38001 -21.11068 -20.33985 -19.33313 -18.30312 -17.13532 -16.77313 -16.05063 -15.88302 -15.42785 -15.15847 -15.02410 -14.88945 -14.56241 -14.20725 -13.63992 -13.59316 -13.42022 -13.30047 -12.97661 -12.80020 -12.67486 -12.55216 -12.30213 -12.10868 -11.84113 -11.56650 -11.50713 -11.22535 -11.15340 -11.00366 -10.75521 -10.60967 -9.99549 -9.60872 -9.55287 -9.03978 -8.93918 -8.74969 -8.44748 -8.19130 -7.74551 -6.31976 -3.83557 1.19578 1.26475 1.30930 1.36829 3.01361 3.06032 3.14251 3.56860 3.63540 3.71175 3.76755 4.09198 4.44062 4.60710 4.73277 4.78121 4.82987 4.87121 5.00017 5.01715 5.03581 5.12819 5.19044 5.33325 5.38834 5.42599 5.50632 5.55435 5.59865 5.71992 5.77371 5.87733 5.90443 5.94347 5.95979 6.14447 6.32542 6.34917 6.38545 6.41455 6.47637 6.56266 6.73445 6.88325 6.98087 7.35086 7.57189 8.12687 8.58872 8.94075 9.41000 9.81433 10.81116 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003469 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.190659 B = 8068.568905 C = 9220.178365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.555 6.555 12 C 0.046 3.954 13 N -0.467 5.467 14 C 0.071 3.929 15 C -0.044 4.044 16 H 0.093 0.907 17 C -0.062 4.062 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.131 4.131 24 C -0.081 4.081 25 C -0.140 4.140 26 C -0.102 4.102 27 C -0.114 4.114 28 C 0.102 3.898 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.006 -7.253 5.584 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.231 5.231 10 C 0.235 3.765 11 O -0.436 6.436 12 C -0.083 4.083 13 N -0.182 5.182 14 C -0.056 4.056 15 C -0.063 4.063 16 H 0.111 0.889 17 C -0.062 4.062 18 C -0.123 4.123 19 C -0.136 4.136 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.100 4.100 25 C -0.158 4.158 26 C -0.121 4.121 27 C -0.134 4.134 28 C 0.006 3.994 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 21.967 -8.137 5.245 24.006 hybrid contribution 0.979 1.873 0.494 2.170 sum 22.947 -6.264 5.739 24.469 Atomic orbital electron populations 1.69615 1.05632 1.27502 1.49334 1.25026 0.95475 0.97934 0.97649 0.86689 0.79764 0.84111 0.78938 1.19576 1.20157 1.19537 1.19425 0.79129 0.96646 1.48100 0.86236 1.42201 1.07546 1.06054 1.67279 1.19579 0.87813 0.84685 0.84377 1.90582 1.69126 1.30789 1.53062 1.22050 0.95907 0.87799 1.02523 1.59575 1.13890 1.21341 1.23435 1.23264 0.94321 1.02785 0.85225 1.20400 0.95122 0.98046 0.92771 0.88855 1.19536 0.98982 0.93848 0.93831 1.21039 0.99124 0.92292 0.99849 1.21134 0.99476 0.99303 0.93709 1.21129 1.00653 0.96273 0.96320 1.21099 1.00269 0.93099 0.99376 1.21070 0.99791 0.99533 0.92992 1.20858 0.93922 1.04157 0.94395 1.20331 0.92843 0.99296 0.97512 1.20987 0.99572 1.03083 0.92198 1.20904 0.92971 0.99576 0.98624 1.20553 0.94463 1.02738 0.95679 1.19687 0.88211 0.97825 0.93701 0.91597 0.79739 0.88848 0.92425 0.89018 0.88885 0.85980 0.86130 0.86309 0.86195 0.86137 0.86587 0.86064 0.85763 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.28 27.74 -169.99 -4.71 14.56 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 7 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 N -0.59 -14.00 5.09 -10.96 -0.06 -14.05 16 10 C 0.45 10.21 7.24 -10.99 -0.08 10.13 16 11 O -0.55 -14.88 15.55 5.55 0.09 -14.79 16 12 C 0.05 0.80 5.23 -4.98 -0.03 0.77 16 13 N -0.47 -7.82 4.59 -170.37 -0.78 -8.61 16 14 C 0.07 1.10 5.79 -2.42 -0.01 1.09 16 15 C -0.04 -0.56 3.18 -91.65 -0.29 -0.85 16 16 H 0.09 1.12 7.96 -51.93 -0.41 0.71 16 17 C -0.06 -0.72 4.82 -104.62 -0.50 -1.23 16 18 C -0.11 -1.23 8.49 -39.58 -0.34 -1.56 16 19 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 20 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 21 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 22 C -0.12 -1.22 9.69 -39.58 -0.38 -1.61 16 23 C -0.13 -1.68 5.32 -104.04 -0.55 -2.23 16 24 C -0.08 -0.91 9.87 -39.68 -0.39 -1.31 16 25 C -0.14 -1.42 10.06 -39.53 -0.40 -1.82 16 26 C -0.10 -1.08 10.02 -39.68 -0.40 -1.47 16 27 C -0.11 -1.46 10.05 -39.27 -0.39 -1.86 16 28 C 0.10 1.48 5.49 -83.41 -0.46 1.02 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 30 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 31 H 0.09 1.44 7.96 -51.93 -0.41 1.03 16 32 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 33 H 0.09 1.55 7.30 -51.93 -0.38 1.17 16 34 H 0.09 1.46 6.79 -51.93 -0.35 1.11 16 35 H 0.12 1.48 7.58 -52.49 -0.40 1.09 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 1.10 7.98 -52.49 -0.42 0.68 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 42 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -32.72 360.09 -10.47 -43.19 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.54 Total: 12.50 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -5.67 Total: -13.33 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.06 Total: -47.55 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.09 Total: -14.79 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.72 -10.47 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444773756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.536 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds