Wall clock time and date at job start Tue Mar 31 2020 13:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 120.00016 * 2 1 4 4 H 1.48504 * 109.47008 * 269.99707 * 3 2 1 5 5 H 1.48495 * 109.46943 * 29.99776 * 3 2 1 6 6 H 1.48497 * 109.47118 * 150.00185 * 3 2 1 7 7 C 1.38948 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00602 * 359.97438 * 7 2 1 9 9 N 1.37106 * 120.00224 * 179.97438 * 7 2 1 10 10 C 1.34767 * 119.99943 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00654 * 359.72784 * 10 9 7 12 12 C 1.50705 * 119.99936 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47568 * 173.94597 * 12 10 9 14 14 C 1.47913 * 110.99944 * 284.23965 * 13 12 10 15 15 C 1.54605 * 102.62141 * 265.48351 * 14 13 12 16 16 H 1.09002 * 110.73619 * 92.80184 * 15 14 13 17 17 C 1.50693 * 110.73814 * 216.12808 * 15 14 13 18 18 C 1.38238 * 120.00271 * 54.59863 * 17 15 14 19 19 C 1.38233 * 120.00115 * 179.80338 * 18 17 15 20 20 C 1.38237 * 120.00129 * 0.40342 * 19 18 17 21 21 C 1.38232 * 119.99629 * 359.85096 * 20 19 18 22 22 C 1.38231 * 120.00635 * 359.95682 * 21 20 19 23 23 C 1.51576 * 102.83727 * 334.46777 * 15 14 13 24 24 C 1.37914 * 131.56218 * 196.34834 * 23 15 14 25 25 C 1.38304 * 120.07788 * 179.28113 * 24 23 15 26 26 C 1.38299 * 119.88483 * 359.97438 * 25 24 23 27 27 C 1.37905 * 120.26654 * 0.12223 * 26 25 24 28 28 C 1.38968 * 107.95217 * 15.93143 * 23 15 14 29 29 H 0.96995 * 120.00234 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99566 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46684 * 293.94333 * 12 10 9 32 32 H 1.09000 * 109.47386 * 53.94254 * 12 10 9 33 33 H 1.09000 * 110.78186 * 23.76496 * 14 13 12 34 34 H 1.08998 * 110.78388 * 147.20141 * 14 13 12 35 35 H 1.08002 * 119.99802 * 359.97438 * 18 17 15 36 36 H 1.07999 * 120.00096 * 180.22589 * 19 18 17 37 37 H 1.07998 * 120.00354 * 179.83000 * 20 19 18 38 38 H 1.08001 * 119.99810 * 179.97438 * 21 20 19 39 39 H 1.07994 * 120.00503 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.96239 * 359.27941 * 24 23 15 41 41 H 1.08003 * 120.05511 * 180.02562 * 25 24 23 42 42 H 1.08010 * 119.86589 * 180.14793 * 26 25 24 43 43 H 1.07999 * 119.89934 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0074 12 6 5.5607 -2.3705 0.0011 13 7 6.0505 -3.7476 0.1483 14 6 5.9069 -4.2147 1.5444 15 6 7.2954 -3.9037 2.1491 16 1 7.3000 -2.9204 2.6195 17 6 7.6994 -4.9701 3.1342 18 6 7.7152 -6.2974 2.7483 19 6 8.0897 -7.2752 3.6508 20 6 8.4404 -6.9266 4.9417 21 6 8.4195 -5.5999 5.3291 22 6 8.0489 -4.6216 4.4256 23 6 8.2032 -3.9224 0.9354 24 6 9.5747 -4.0106 0.8199 25 6 10.1656 -4.0217 -0.4305 26 6 9.3789 -3.9448 -1.5652 27 6 8.0072 -3.8544 -1.4552 28 6 7.4041 -3.8387 -0.1985 29 1 -0.4850 0.8400 -0.0004 30 1 3.8649 -0.3633 -0.0004 31 1 5.9240 -1.9543 -0.9386 32 1 5.9241 -1.7649 0.8313 33 1 5.1263 -3.6561 2.0608 34 1 5.7028 -5.2850 1.5751 35 1 7.4375 -6.5702 1.7409 36 1 8.1055 -8.3119 3.3482 37 1 8.7303 -7.6908 5.6476 38 1 8.6932 -5.3275 6.3378 39 1 8.0322 -3.5851 4.7284 40 1 10.1879 -4.0710 1.7068 41 1 11.2397 -4.0912 -0.5205 42 1 9.8406 -3.9559 -2.5416 43 1 7.3984 -3.7950 -2.3453 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444773756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:51 Heat of formation + Delta-G solvation = 23.443143 kcal Electronic energy + Delta-G solvation = -26206.229801 eV Core-core repulsion = 22601.753609 eV Total energy + Delta-G solvation = -3604.476192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.24128 -40.20912 -39.71099 -37.61612 -35.99723 -34.48281 -33.76408 -31.81049 -31.33149 -31.00976 -29.53417 -28.11957 -26.07134 -24.33738 -23.48239 -23.22401 -22.16116 -21.43618 -21.09723 -20.19421 -18.09345 -17.91322 -17.50581 -16.93794 -16.78199 -16.30046 -16.26494 -15.96515 -15.79613 -15.44685 -15.07201 -14.75053 -14.53952 -14.44743 -14.24121 -14.06094 -14.01718 -13.67843 -13.55984 -13.32359 -13.09741 -12.87128 -12.62475 -12.43225 -12.40463 -12.07758 -11.99833 -11.89005 -11.63138 -11.53467 -10.81610 -10.27099 -10.20299 -9.83924 -9.77781 -9.59369 -8.82168 -8.42893 -6.04170 0.34361 0.41389 0.48230 0.51008 1.28730 1.33998 1.42969 1.90031 2.21318 2.40185 2.81160 2.83621 3.00500 3.12621 3.60480 3.66309 3.76923 3.93016 4.03827 4.10490 4.17567 4.18651 4.22026 4.28394 4.30550 4.31216 4.48858 4.61159 4.63367 4.67301 4.74058 4.76334 4.91054 5.08325 5.14567 5.16355 5.38460 5.49158 5.53013 5.58327 5.61871 5.62905 5.71763 5.81720 5.85807 5.94461 6.11632 6.31636 6.56994 6.85258 7.35964 7.92344 8.74711 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.003469 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.190659 B = 8068.568905 C = 9220.178365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.963 3.037 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.328 4.328 8 H 0.056 0.944 9 N -0.589 5.589 10 C 0.452 3.548 11 O -0.604 6.604 12 C 0.061 3.939 13 N -0.491 5.491 14 C 0.071 3.929 15 C -0.032 4.032 16 H 0.101 0.899 17 C -0.075 4.075 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.132 4.132 24 C -0.085 4.085 25 C -0.129 4.129 26 C -0.098 4.098 27 C -0.126 4.126 28 C 0.073 3.927 29 H 0.280 0.720 30 H 0.389 0.611 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.606 -5.708 6.336 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.211 4.211 3 Si 0.783 3.217 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.457 4.457 8 H 0.074 0.926 9 N -0.231 5.231 10 C 0.239 3.761 11 O -0.488 6.488 12 C -0.068 4.068 13 N -0.208 5.208 14 C -0.056 4.056 15 C -0.051 4.051 16 H 0.119 0.881 17 C -0.075 4.075 18 C -0.140 4.140 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.134 4.134 24 C -0.103 4.103 25 C -0.147 4.147 26 C -0.117 4.117 27 C -0.145 4.145 28 C -0.023 4.023 29 H 0.089 0.911 30 H 0.225 0.775 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 26.606 -6.605 5.996 28.061 hybrid contribution -0.457 1.197 0.257 1.307 sum 26.149 -5.407 6.253 27.425 Atomic orbital electron populations 1.69796 1.08114 1.29301 1.50128 1.26090 0.96446 1.02629 0.95984 0.85393 0.79473 0.76826 0.80028 1.18068 1.19824 1.15588 1.18992 0.81279 0.94985 1.50485 0.92635 1.42001 1.05892 1.07387 1.67831 1.20691 0.90306 0.83494 0.81594 1.90556 1.71018 1.32682 1.54542 1.21909 0.90922 0.89266 1.04726 1.59506 1.16078 1.21071 1.24117 1.23110 0.95692 1.01457 0.85309 1.20234 0.93101 0.98709 0.93057 0.88122 1.19516 1.00111 0.93521 0.94345 1.21031 1.00313 0.92956 0.99683 1.21371 0.99187 0.99765 0.94028 1.21475 0.99620 0.97047 0.96254 1.21443 0.99291 0.92921 1.00293 1.21286 0.99667 1.00655 0.92549 1.20883 0.94579 1.04350 0.93635 1.20571 0.92138 0.98846 0.98773 1.21395 1.01171 1.00785 0.91373 1.21234 0.91910 0.98229 1.00284 1.20743 0.95682 1.03152 0.94972 1.19762 0.87063 1.00499 0.94977 0.91069 0.77529 0.86565 0.89773 0.91388 0.90354 0.87557 0.84687 0.83781 0.83715 0.84851 0.85177 0.82892 0.82920 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.96 21.66 0.30 -56.25 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.96 38.97 27.74 68.60 1.90 40.87 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 7 C -0.33 -19.46 10.16 84.04 0.85 -18.61 16 8 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 9 N -0.59 -28.36 5.09 -306.99 -1.56 -29.92 16 10 C 0.45 21.19 7.24 87.66 0.63 21.82 16 11 O -0.60 -34.66 15.55 -3.06 -0.05 -34.70 16 12 C 0.06 2.06 5.23 85.56 0.45 2.51 16 13 N -0.49 -16.85 4.59 -692.94 -3.18 -20.04 16 14 C 0.07 2.33 5.79 86.65 0.50 2.83 16 15 C -0.03 -0.80 3.18 -11.46 -0.04 -0.83 16 16 H 0.10 2.32 7.96 -2.39 -0.02 2.30 16 17 C -0.07 -1.72 4.82 -19.87 -0.10 -1.81 16 18 C -0.12 -2.86 8.49 22.27 0.19 -2.67 16 19 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 20 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 21 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 22 C -0.12 -2.41 9.69 22.27 0.22 -2.19 16 23 C -0.13 -3.24 5.32 -19.49 -0.10 -3.34 16 24 C -0.08 -1.68 9.87 22.21 0.22 -1.46 16 25 C -0.13 -2.14 10.06 22.30 0.22 -1.91 16 26 C -0.10 -1.77 10.02 22.21 0.22 -1.54 16 27 C -0.13 -3.04 10.05 22.47 0.23 -2.82 16 28 C 0.07 2.06 5.49 38.28 0.21 2.27 16 29 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.39 15.53 5.76 -92.71 -0.53 14.99 16 31 H 0.12 3.41 7.96 -2.38 -0.02 3.40 16 32 H 0.08 2.41 7.95 -2.39 -0.02 2.39 16 33 H 0.07 2.47 7.30 -2.39 -0.02 2.45 16 34 H 0.08 2.71 6.79 -2.39 -0.02 2.69 16 35 H 0.11 2.75 7.58 -2.91 -0.02 2.72 16 36 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 39 H 0.13 2.16 7.98 -2.91 -0.02 2.14 16 40 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 42 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -77.81 360.09 2.69 -75.12 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: 0.44 Total: 38.76 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.85 Total: -13.85 kcal Atomic # 7 Polarization: -101.75 SS G_CDS: -4.44 Total: -106.20 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.05 Total: -34.70 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.90 Total: 40.87 kcal Total: -77.81 2.69 -75.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444773756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.563 kcal (2) G-P(sol) polarization free energy of solvation -77.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds