Wall clock time and date at job start Tue Mar 31 2020 13:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00259 * 2 1 4 4 H 1.48501 * 109.46978 * 269.99904 * 3 2 1 5 5 H 1.48496 * 109.46795 * 29.99541 * 3 2 1 6 6 H 1.48493 * 109.47410 * 149.99640 * 3 2 1 7 7 C 1.38960 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99628 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99817 * 0.28084 * 7 2 1 10 10 C 1.34779 * 119.99971 * 179.72480 * 9 7 2 11 11 O 1.21290 * 119.99634 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00397 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47534 * 174.11322 * 12 10 9 14 14 C 1.47907 * 111.00074 * 283.33742 * 13 12 10 15 15 C 1.54602 * 102.62052 * 265.48481 * 14 13 12 16 16 H 1.09000 * 110.73710 * 216.12680 * 15 14 13 17 17 C 1.50699 * 110.89449 * 92.87684 * 15 14 13 18 18 C 1.38237 * 119.99888 * 268.44700 * 17 15 14 19 19 C 1.38238 * 119.99936 * 179.76772 * 18 17 15 20 20 C 1.38238 * 120.00059 * 0.48896 * 19 18 17 21 21 C 1.38242 * 119.99593 * 359.78556 * 20 19 18 22 22 C 1.38232 * 120.00402 * 359.96165 * 21 20 19 23 23 C 1.51567 * 102.83844 * 334.46608 * 15 14 13 24 24 C 1.37921 * 131.56491 * 196.35010 * 23 15 14 25 25 C 1.38307 * 120.08174 * 179.28309 * 24 23 15 26 26 C 1.38309 * 119.88085 * 359.97438 * 25 24 23 27 27 C 1.37911 * 120.26531 * 0.12937 * 26 25 24 28 28 C 1.38968 * 107.95261 * 15.93476 * 23 15 14 29 29 H 0.97000 * 119.99450 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00434 * 359.71870 * 9 7 2 31 31 H 1.09000 * 109.47369 * 294.11894 * 12 10 9 32 32 H 1.09006 * 109.47157 * 54.11088 * 12 10 9 33 33 H 1.09005 * 110.77787 * 23.76070 * 14 13 12 34 34 H 1.09001 * 110.78075 * 147.19904 * 14 13 12 35 35 H 1.08000 * 119.99944 * 359.97438 * 18 17 15 36 36 H 1.07999 * 119.99898 * 180.24981 * 19 18 17 37 37 H 1.07990 * 120.00250 * 179.76715 * 20 19 18 38 38 H 1.08002 * 119.99578 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.00143 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.96190 * 359.27816 * 24 23 15 41 41 H 1.07995 * 120.05677 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.86617 * 180.14077 * 26 25 24 43 43 H 1.08001 * 119.89822 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2035 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 -0.0048 10 6 1.9972 -3.5579 -0.0098 11 8 3.2101 -3.5579 -0.0102 12 6 1.2437 -4.8630 -0.0151 13 7 2.1919 -5.9753 -0.1621 14 6 2.6560 -6.0949 -1.5613 15 6 1.6887 -7.1480 -2.1492 16 1 2.2053 -7.7916 -2.8613 17 6 0.5008 -6.4845 -2.7968 18 6 -0.6455 -6.2487 -2.0610 19 6 -1.7335 -5.6357 -2.6538 20 6 -1.6789 -5.2675 -3.9851 21 6 -0.5346 -5.5084 -4.7224 22 6 0.5553 -6.1167 -4.1283 23 6 1.2631 -7.9346 -0.9254 24 6 0.6568 -9.1664 -0.7947 25 6 0.3829 -9.6744 0.4622 26 6 0.7186 -8.9450 1.5883 27 6 1.3231 -7.7118 1.4631 28 6 1.5990 -7.1913 0.1997 29 1 -0.4849 0.8401 -0.0004 30 1 0.3534 -2.3907 -0.0047 31 1 0.6987 -4.9716 0.9226 32 1 0.5401 -4.8729 -0.8475 33 1 2.5563 -5.1438 -2.0844 34 1 3.6852 -6.4518 -1.5983 35 1 -0.6898 -6.5405 -1.0221 36 1 -2.6276 -5.4479 -2.0778 37 1 -2.5302 -4.7920 -4.4492 38 1 -0.4921 -5.2212 -5.7627 39 1 1.4490 -6.3053 -4.7044 40 1 0.3955 -9.7351 -1.6749 41 1 -0.0923 -10.6388 0.5641 42 1 0.5066 -9.3429 2.5697 43 1 1.5830 -7.1474 2.3464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444773757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:55 Heat of formation + Delta-G solvation = 40.070460 kcal Electronic energy + Delta-G solvation = -26978.400508 eV Core-core repulsion = 23374.645331 eV Total energy + Delta-G solvation = -3603.755177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29788 -38.73700 -38.06904 -36.40278 -33.90377 -33.11343 -31.22447 -30.93228 -30.39925 -29.79850 -28.50053 -26.45934 -24.32975 -23.20004 -22.74438 -22.00981 -21.04389 -20.31117 -19.13210 -17.86348 -17.03564 -16.56519 -16.08860 -15.80778 -15.20217 -15.15777 -14.77906 -14.68417 -14.28111 -14.15942 -13.69620 -13.50830 -13.40671 -13.23622 -13.05795 -12.75076 -12.33835 -12.26650 -12.18460 -11.66518 -11.52454 -11.44150 -11.36165 -11.10062 -11.00284 -10.79887 -10.63821 -10.38028 -10.19952 -9.56228 -9.47501 -8.89181 -8.81417 -8.58790 -8.25061 -7.93878 -7.60761 -6.39275 -3.79860 1.31471 1.40560 1.41924 1.47309 3.19002 3.27493 3.33520 3.66348 3.79713 3.87359 3.94102 4.21244 4.49662 4.73685 4.88339 4.97737 5.00636 5.06004 5.09171 5.13686 5.19192 5.26019 5.32403 5.36611 5.51367 5.58775 5.65873 5.68307 5.83884 5.85717 5.96125 5.99495 6.02059 6.08811 6.18412 6.28941 6.41133 6.47814 6.52426 6.54155 6.58443 6.67831 6.82133 7.05144 7.11048 7.47384 7.57302 8.08164 8.64234 9.20474 9.56689 10.08747 10.78493 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.004293 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.584651 B = 6520.042897 C = 7779.266603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.575 6.575 12 C 0.041 3.959 13 N -0.465 5.465 14 C 0.071 3.929 15 C -0.043 4.043 16 H 0.098 0.902 17 C -0.071 4.071 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.134 4.134 24 C -0.083 4.083 25 C -0.142 4.142 26 C -0.102 4.102 27 C -0.117 4.117 28 C 0.105 3.895 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -17.299 -5.099 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.459 6.459 12 C -0.088 4.088 13 N -0.180 5.180 14 C -0.056 4.056 15 C -0.062 4.062 16 H 0.116 0.884 17 C -0.071 4.071 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.139 4.139 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.102 4.102 25 C -0.161 4.161 26 C -0.120 4.120 27 C -0.137 4.137 28 C 0.008 3.992 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.775 -16.918 -4.762 17.976 hybrid contribution -0.850 0.772 -0.431 1.227 sum -4.626 -16.146 -5.193 17.580 Atomic orbital electron populations 1.69618 1.05916 1.28070 1.50680 1.25244 0.95611 0.99629 0.97387 0.85877 0.79278 0.80902 0.78359 1.20451 1.20935 1.19405 1.19688 0.93324 0.82170 1.47526 0.87953 1.41838 1.09145 1.04509 1.64591 1.19696 0.88421 0.84430 0.84650 1.90527 1.13535 1.86937 1.54872 1.22230 0.93488 0.90389 1.02685 1.59570 1.35029 1.00783 1.22618 1.23151 0.97959 0.98664 0.85801 1.20394 0.94566 0.96194 0.95064 0.88396 1.19633 0.94624 0.98992 0.93859 1.21070 0.92957 0.98918 0.99797 1.21154 0.98580 0.98469 0.95170 1.21142 0.98244 0.99997 0.94519 1.21096 0.93494 0.99088 0.99889 1.20965 0.98625 0.99451 0.94255 1.20833 1.01381 0.96725 0.94786 1.20342 0.98147 0.94212 0.97455 1.20970 1.02609 1.00276 0.92201 1.20899 0.98328 0.94126 0.98667 1.20558 1.01264 0.96209 0.95630 1.19725 0.94023 0.91735 0.93683 0.91928 0.77555 0.89462 0.91237 0.89099 0.88978 0.86188 0.86037 0.86200 0.86149 0.86092 0.86530 0.86084 0.85815 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 2 C 0.02 0.62 5.50 -17.46 -0.10 0.52 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 10 C 0.44 10.74 7.27 -10.99 -0.08 10.66 16 11 O -0.58 -15.91 15.62 5.55 0.09 -15.82 16 12 C 0.04 0.77 4.88 -4.98 -0.02 0.75 16 13 N -0.46 -8.26 4.58 -170.38 -0.78 -9.04 16 14 C 0.07 1.15 6.00 -2.43 -0.01 1.14 16 15 C -0.04 -0.57 3.25 -91.66 -0.30 -0.86 16 16 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 17 C -0.07 -0.96 4.51 -104.62 -0.47 -1.43 16 18 C -0.11 -1.51 6.69 -39.58 -0.26 -1.78 16 19 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 20 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 21 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 22 C -0.11 -1.44 9.73 -39.58 -0.39 -1.83 16 23 C -0.13 -1.80 4.00 -104.04 -0.42 -2.22 16 24 C -0.08 -0.96 10.03 -39.67 -0.40 -1.35 16 25 C -0.14 -1.49 10.06 -39.53 -0.40 -1.89 16 26 C -0.10 -1.13 10.02 -39.68 -0.40 -1.52 16 27 C -0.12 -1.58 10.05 -39.27 -0.39 -1.98 16 28 C 0.11 1.60 5.06 -83.41 -0.42 1.18 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 31 H 0.09 1.55 7.95 -51.93 -0.41 1.14 16 32 H 0.07 1.25 4.41 -51.93 -0.23 1.02 16 33 H 0.09 1.65 7.14 -51.93 -0.37 1.28 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.12 1.70 6.09 -52.49 -0.32 1.38 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -31.96 355.96 -10.48 -42.44 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -5.39 Total: 14.19 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -5.40 Total: -14.75 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.11 Total: -47.62 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.96 -10.48 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444773757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.512 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds