Wall clock time and date at job start Tue Mar 31 2020 13:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00259 * 2 1 4 4 H 1.48501 * 109.46978 * 269.99904 * 3 2 1 5 5 H 1.48496 * 109.46795 * 29.99541 * 3 2 1 6 6 H 1.48493 * 109.47410 * 149.99640 * 3 2 1 7 7 C 1.38960 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99628 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99817 * 0.28084 * 7 2 1 10 10 C 1.34779 * 119.99971 * 179.72480 * 9 7 2 11 11 O 1.21290 * 119.99634 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00397 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47534 * 174.11322 * 12 10 9 14 14 C 1.47907 * 111.00074 * 283.33742 * 13 12 10 15 15 C 1.54602 * 102.62052 * 265.48481 * 14 13 12 16 16 H 1.09000 * 110.73710 * 216.12680 * 15 14 13 17 17 C 1.50699 * 110.89449 * 92.87684 * 15 14 13 18 18 C 1.38237 * 119.99888 * 268.44700 * 17 15 14 19 19 C 1.38238 * 119.99936 * 179.76772 * 18 17 15 20 20 C 1.38238 * 120.00059 * 0.48896 * 19 18 17 21 21 C 1.38242 * 119.99593 * 359.78556 * 20 19 18 22 22 C 1.38232 * 120.00402 * 359.96165 * 21 20 19 23 23 C 1.51567 * 102.83844 * 334.46608 * 15 14 13 24 24 C 1.37921 * 131.56491 * 196.35010 * 23 15 14 25 25 C 1.38307 * 120.08174 * 179.28309 * 24 23 15 26 26 C 1.38309 * 119.88085 * 359.97438 * 25 24 23 27 27 C 1.37911 * 120.26531 * 0.12937 * 26 25 24 28 28 C 1.38968 * 107.95261 * 15.93476 * 23 15 14 29 29 H 0.97000 * 119.99450 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00434 * 359.71870 * 9 7 2 31 31 H 1.09000 * 109.47369 * 294.11894 * 12 10 9 32 32 H 1.09006 * 109.47157 * 54.11088 * 12 10 9 33 33 H 1.09005 * 110.77787 * 23.76070 * 14 13 12 34 34 H 1.09001 * 110.78075 * 147.19904 * 14 13 12 35 35 H 1.08000 * 119.99944 * 359.97438 * 18 17 15 36 36 H 1.07999 * 119.99898 * 180.24981 * 19 18 17 37 37 H 1.07990 * 120.00250 * 179.76715 * 20 19 18 38 38 H 1.08002 * 119.99578 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.00143 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.96190 * 359.27816 * 24 23 15 41 41 H 1.07995 * 120.05677 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.86617 * 180.14077 * 26 25 24 43 43 H 1.08001 * 119.89822 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2035 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 -0.0048 10 6 1.9972 -3.5579 -0.0098 11 8 3.2101 -3.5579 -0.0102 12 6 1.2437 -4.8630 -0.0151 13 7 2.1919 -5.9753 -0.1621 14 6 2.6560 -6.0949 -1.5613 15 6 1.6887 -7.1480 -2.1492 16 1 2.2053 -7.7916 -2.8613 17 6 0.5008 -6.4845 -2.7968 18 6 -0.6455 -6.2487 -2.0610 19 6 -1.7335 -5.6357 -2.6538 20 6 -1.6789 -5.2675 -3.9851 21 6 -0.5346 -5.5084 -4.7224 22 6 0.5553 -6.1167 -4.1283 23 6 1.2631 -7.9346 -0.9254 24 6 0.6568 -9.1664 -0.7947 25 6 0.3829 -9.6744 0.4622 26 6 0.7186 -8.9450 1.5883 27 6 1.3231 -7.7118 1.4631 28 6 1.5990 -7.1913 0.1997 29 1 -0.4849 0.8401 -0.0004 30 1 0.3534 -2.3907 -0.0047 31 1 0.6987 -4.9716 0.9226 32 1 0.5401 -4.8729 -0.8475 33 1 2.5563 -5.1438 -2.0844 34 1 3.6852 -6.4518 -1.5983 35 1 -0.6898 -6.5405 -1.0221 36 1 -2.6276 -5.4479 -2.0778 37 1 -2.5302 -4.7920 -4.4492 38 1 -0.4921 -5.2212 -5.7627 39 1 1.4490 -6.3053 -4.7044 40 1 0.3955 -9.7351 -1.6749 41 1 -0.0923 -10.6388 0.5641 42 1 0.5066 -9.3429 2.5697 43 1 1.5830 -7.1474 2.3464 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444773757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:54 Heat of formation + Delta-G solvation = 21.747819 kcal Electronic energy + Delta-G solvation = -26979.195037 eV Core-core repulsion = 23374.645331 eV Total energy + Delta-G solvation = -3604.549707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42007 -39.98430 -39.65039 -37.56288 -35.94582 -34.26962 -33.28772 -31.90030 -31.37241 -30.99292 -29.63577 -27.97989 -26.14929 -24.30977 -23.72082 -23.00902 -22.15794 -21.41388 -20.90878 -19.90833 -18.10300 -18.01171 -17.21471 -17.09710 -16.65776 -16.31779 -16.14839 -15.91579 -15.87529 -15.50122 -15.31848 -14.68750 -14.52281 -14.35486 -14.24247 -13.97319 -13.69053 -13.53969 -13.38393 -13.24690 -13.09088 -12.82776 -12.52960 -12.43963 -12.41877 -12.13312 -12.05137 -11.84717 -11.62278 -11.52054 -10.79253 -10.20756 -10.03387 -9.82346 -9.78033 -9.51866 -8.78828 -8.47644 -5.96846 0.34328 0.41897 0.47209 0.49460 1.36483 1.40307 1.53415 2.00333 2.25825 2.54432 2.81220 2.84965 3.17852 3.23336 3.55251 3.68114 3.83933 4.02204 4.05192 4.11012 4.14861 4.24974 4.25906 4.29783 4.38007 4.41727 4.50248 4.60327 4.65792 4.68766 4.73067 4.80905 4.91308 5.04386 5.13438 5.16809 5.38895 5.40627 5.51585 5.56329 5.61637 5.62130 5.68077 5.84224 5.86693 6.01003 6.09947 6.34872 6.57519 7.10408 7.51849 8.07609 8.69823 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.004293 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.584651 B = 6520.042897 C = 7779.266603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.333 4.333 8 H 0.079 0.921 9 N -0.571 5.571 10 C 0.441 3.559 11 O -0.614 6.614 12 C 0.060 3.940 13 N -0.486 5.486 14 C 0.069 3.931 15 C -0.031 4.031 16 H 0.118 0.882 17 C -0.082 4.082 18 C -0.122 4.122 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.086 4.086 25 C -0.129 4.129 26 C -0.098 4.098 27 C -0.130 4.130 28 C 0.072 3.928 29 H 0.278 0.722 30 H 0.394 0.606 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.201 -18.745 -5.675 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.097 0.903 9 N -0.208 5.208 10 C 0.228 3.772 11 O -0.500 6.500 12 C -0.069 4.069 13 N -0.202 5.202 14 C -0.057 4.057 15 C -0.051 4.051 16 H 0.136 0.864 17 C -0.082 4.082 18 C -0.140 4.140 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.137 4.137 24 C -0.104 4.104 25 C -0.147 4.147 26 C -0.117 4.117 27 C -0.150 4.150 28 C -0.024 4.024 29 H 0.087 0.913 30 H 0.228 0.772 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.083 -18.392 -5.337 19.814 hybrid contribution -0.490 1.133 -0.240 1.257 sum -5.572 -17.259 -5.578 18.975 Atomic orbital electron populations 1.69681 1.06853 1.29312 1.50137 1.26039 0.96530 1.02332 0.96137 0.84933 0.77906 0.76830 0.78704 1.19550 1.19383 1.19792 1.19653 0.92648 0.83851 1.50119 0.90342 1.41895 1.09177 1.04660 1.65099 1.20609 0.88253 0.85705 0.82608 1.90485 1.15495 1.87789 1.56191 1.21974 0.93121 0.88311 1.03492 1.59548 1.35459 1.01579 1.23637 1.23069 0.98913 0.98302 0.85461 1.20282 0.93939 0.95400 0.95431 0.86379 1.19729 0.94582 0.99553 0.94385 1.21095 0.93606 0.99750 0.99575 1.21406 0.98910 0.98496 0.95857 1.21467 0.99111 0.99710 0.94366 1.21446 0.93158 0.98440 1.01080 1.21259 0.99543 0.99263 0.94173 1.20870 1.01634 0.97304 0.93891 1.20653 0.97352 0.93475 0.98923 1.21403 1.00873 1.01123 0.91330 1.21231 0.97043 0.92937 1.00459 1.20740 1.01994 0.97430 0.94872 1.19806 0.96391 0.91118 0.95036 0.91255 0.77238 0.88558 0.90246 0.91905 0.88996 0.86951 0.84866 0.84206 0.83884 0.84477 0.84439 0.82688 0.83014 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.37 13.05 21.67 0.28 -50.08 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.33 -19.44 9.68 84.04 0.81 -18.62 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.57 -30.70 5.29 -306.98 -1.62 -32.32 16 10 C 0.44 22.43 7.27 87.65 0.64 23.07 16 11 O -0.61 -35.76 15.62 -3.06 -0.05 -35.80 16 12 C 0.06 2.36 4.88 85.55 0.42 2.78 16 13 N -0.49 -17.88 4.58 -692.95 -3.17 -21.05 16 14 C 0.07 2.33 6.00 86.65 0.52 2.85 16 15 C -0.03 -0.82 3.25 -11.46 -0.04 -0.85 16 16 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 17 C -0.08 -2.19 4.51 -19.86 -0.09 -2.28 16 18 C -0.12 -3.34 6.69 22.27 0.15 -3.19 16 19 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 20 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 21 C -0.12 -2.80 10.05 22.27 0.22 -2.58 16 22 C -0.12 -3.01 9.73 22.27 0.22 -2.79 16 23 C -0.13 -3.46 4.00 -19.49 -0.08 -3.54 16 24 C -0.09 -1.74 10.03 22.21 0.22 -1.52 16 25 C -0.13 -2.25 10.06 22.30 0.22 -2.02 16 26 C -0.10 -1.93 10.02 22.21 0.22 -1.70 16 27 C -0.13 -3.46 10.05 22.47 0.23 -3.24 16 28 C 0.07 2.20 5.06 38.29 0.19 2.40 16 29 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.39 20.32 7.90 -92.71 -0.73 19.59 16 31 H 0.10 3.55 7.95 -2.39 -0.02 3.53 16 32 H 0.08 2.96 4.41 -2.38 -0.01 2.95 16 33 H 0.06 2.42 7.14 -2.38 -0.02 2.40 16 34 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.11 3.18 6.09 -2.91 -0.02 3.16 16 36 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.14 2.59 8.06 -2.92 -0.02 2.57 16 38 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 43 H 0.12 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -70.79 355.96 2.55 -68.24 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: 0.31 Total: 42.55 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.78 Total: -17.13 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.51 Total: -103.46 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.05 Total: -35.80 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -70.79 2.55 -68.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444773757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.990 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds