Wall clock time and date at job start Tue Mar 31 2020 13:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46884 * 269.99779 * 3 2 1 5 5 H 1.48497 * 109.47233 * 29.99999 * 3 2 1 6 6 H 1.48505 * 109.47225 * 150.00240 * 3 2 1 7 7 C 1.37882 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00011 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99749 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47109 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47185 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99987 * 180.27804 * 11 10 9 13 13 O 1.21585 * 119.99867 * 354.79118 * 12 11 10 14 14 N 1.34778 * 120.00092 * 174.79382 * 12 11 10 15 15 C 1.47148 * 120.98375 * 4.80215 * 14 12 11 16 16 C 1.53291 * 108.38876 * 129.43860 * 15 14 12 17 17 O 1.42964 * 109.22351 * 52.30152 * 16 15 14 18 18 C 1.42961 * 114.16555 * 297.42376 * 17 16 15 19 19 C 1.47150 * 120.97790 * 184.51293 * 14 12 11 20 20 H 1.09002 * 109.67760 * 110.83777 * 19 14 12 21 21 C 1.50698 * 109.68577 * 350.28532 * 19 14 12 22 22 C 1.38244 * 119.97052 * 298.01870 * 21 19 14 23 23 C 1.38202 * 120.02390 * 179.76586 * 22 21 19 24 24 C 1.38470 * 119.97155 * 0.51564 * 23 22 21 25 25 F 1.35092 * 120.02676 * 179.76806 * 24 23 22 26 26 C 1.38459 * 119.94856 * 359.73712 * 24 23 22 27 27 C 1.38205 * 119.97223 * 0.02562 * 26 24 23 28 28 H 0.97001 * 120.00466 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47399 * 60.00340 * 9 7 2 30 30 H 1.09001 * 109.47419 * 300.00135 * 9 7 2 31 31 H 1.09002 * 109.46967 * 59.99763 * 10 9 7 32 32 H 1.09001 * 109.46835 * 300.00180 * 10 9 7 33 33 H 0.97003 * 120.00263 * 359.97438 * 11 10 9 34 34 H 1.09001 * 109.67918 * 249.16387 * 15 14 12 35 35 H 1.09000 * 109.67978 * 9.71351 * 15 14 12 36 36 H 1.09000 * 109.51049 * 172.22550 * 16 15 14 37 37 H 1.08997 * 109.51365 * 292.37929 * 16 15 14 38 38 H 1.08998 * 109.51559 * 182.50304 * 18 17 16 39 39 H 1.09003 * 109.51221 * 302.60160 * 18 17 16 40 40 H 1.07991 * 119.99100 * 0.02849 * 22 21 19 41 41 H 1.07993 * 120.01917 * 180.25918 * 23 22 21 42 42 H 1.07997 * 120.01560 * 180.02562 * 26 24 23 43 43 H 1.08005 * 119.98158 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 0.0044 13 8 3.3992 -6.1003 -0.0857 14 7 1.5165 -7.2626 0.1098 15 6 0.0453 -7.2922 0.1145 16 6 -0.4210 -8.3224 -0.9204 17 8 0.2399 -9.5666 -0.6768 18 6 1.6615 -9.5115 -0.8174 19 6 2.2345 -8.5426 0.2171 20 1 2.1004 -8.9559 1.2167 21 6 3.7015 -8.3257 -0.0507 22 6 4.1165 -7.8547 -1.2824 23 6 5.4612 -7.6509 -1.5276 24 6 6.3938 -7.9287 -0.5425 25 9 7.7090 -7.7343 -0.7825 26 6 5.9774 -8.4054 0.6889 27 6 4.6317 -8.6038 0.9334 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 0.5428 -4.9308 -0.0011 34 1 -0.3129 -7.5775 1.1037 35 1 -0.3425 -6.3077 -0.1470 36 1 -1.4990 -8.4603 -0.8367 37 1 -0.1749 -7.9695 -1.9219 38 1 2.0817 -10.5048 -0.6597 39 1 1.9151 -9.1637 -1.8188 40 1 3.3893 -7.6420 -2.0519 41 1 5.7849 -7.2790 -2.4884 42 1 6.7038 -8.6221 1.4582 43 1 4.3067 -8.9760 1.8938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458664001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:26 Heat of formation + Delta-G solvation = -88.878746 kcal Electronic energy + Delta-G solvation = -27642.251587 eV Core-core repulsion = 23602.135527 eV Total energy + Delta-G solvation = -4040.116059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.83690 -42.06266 -39.67048 -39.37548 -36.64782 -35.80093 -34.92914 -33.58677 -31.99938 -31.36187 -30.21200 -28.44437 -26.63001 -25.32499 -24.17375 -23.34552 -23.04889 -22.32572 -20.72504 -19.24015 -18.61738 -18.48076 -17.60563 -17.52610 -16.92160 -16.66281 -16.59043 -16.50808 -16.46140 -16.15227 -15.73802 -15.45286 -15.29133 -15.01757 -14.43127 -14.40059 -14.35280 -14.27638 -13.95341 -13.46360 -13.20117 -13.03836 -12.93037 -12.56209 -12.50660 -12.37236 -12.24597 -11.92733 -11.83736 -11.63182 -11.44517 -11.20829 -11.05890 -10.61170 -10.22121 -9.72338 -9.44423 -8.96532 -8.25063 -6.34989 0.22915 0.46301 1.40925 1.41085 1.51890 1.58400 2.16612 2.39223 2.68215 2.81052 3.02617 3.09998 3.41016 3.56828 3.70813 3.84791 3.96687 4.05426 4.10139 4.17652 4.25829 4.37502 4.48219 4.49867 4.52072 4.60780 4.75129 4.83911 4.86644 4.90781 5.03089 5.06690 5.27260 5.29173 5.34985 5.38110 5.51708 5.58641 5.60172 5.77657 5.88402 6.03894 6.09217 6.16624 6.77950 6.97762 7.34434 7.59415 8.86728 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.003652 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.227986 B = 7664.660032 C = 9752.211888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.166 3.834 11 N -0.736 5.736 12 C 0.696 3.304 13 O -0.594 6.594 14 N -0.630 5.630 15 C 0.072 3.928 16 C 0.048 3.952 17 O -0.383 6.383 18 C 0.059 3.941 19 C 0.171 3.829 20 H 0.104 0.896 21 C -0.068 4.068 22 C -0.022 4.022 23 C -0.173 4.173 24 C 0.072 3.928 25 F -0.156 7.156 26 C -0.163 4.163 27 C -0.087 4.087 28 H 0.266 0.734 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.401 0.599 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.055 0.945 38 H 0.130 0.870 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.559 -22.924 -0.368 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.012 4.012 10 C 0.042 3.958 11 N -0.393 5.393 12 C 0.398 3.602 13 O -0.475 6.475 14 N -0.369 5.369 15 C -0.051 4.051 16 C -0.029 4.029 17 O -0.301 6.301 18 C -0.019 4.019 19 C 0.068 3.932 20 H 0.121 0.879 21 C -0.069 4.069 22 C -0.041 4.041 23 C -0.192 4.192 24 C 0.053 3.947 25 F -0.135 7.135 26 C -0.181 4.181 27 C -0.106 4.106 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.238 0.762 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.152 0.848 37 H 0.073 0.927 38 H 0.148 0.852 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.218 -22.944 -0.374 22.979 hybrid contribution 0.345 1.811 -0.222 1.857 sum 1.562 -21.133 -0.596 21.199 Atomic orbital electron populations 1.70041 1.07444 1.27978 1.51004 1.25811 0.95754 1.02892 0.94403 0.85497 0.78654 0.78704 0.78515 1.19801 1.20415 1.19248 1.21438 0.93475 0.91977 1.51532 0.92568 1.19107 0.94212 0.91686 0.96211 1.20980 0.94424 0.81147 0.99283 1.45514 1.10251 1.04585 1.78949 1.16181 0.85236 0.80793 0.77991 1.91041 1.12692 1.85446 1.58283 1.47423 1.07024 1.04121 1.78337 1.22591 0.78528 1.01764 1.02205 1.23125 0.99328 0.83489 0.96963 1.87978 1.18790 1.32101 1.91252 1.23059 0.81099 1.00694 0.97024 1.20704 0.87688 0.83111 1.01735 0.87867 1.19477 0.94149 0.99008 0.94229 1.20478 0.94024 0.93114 0.96451 1.21014 0.93539 1.04906 0.99756 1.17898 0.77224 1.03396 0.96199 1.91427 1.33573 1.93367 1.95101 1.21143 0.97789 1.03451 0.95765 1.20921 0.91396 0.99192 0.99088 0.92525 0.97399 0.97415 0.94186 0.94067 0.76204 0.88889 0.88777 0.84814 0.92712 0.85184 0.92640 0.86758 0.85358 0.83683 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.61 13.29 21.45 0.28 -53.33 16 2 C 0.01 0.58 5.46 84.66 0.46 1.04 16 3 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.55 -30.35 9.11 25.60 0.23 -30.12 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 9 C 0.03 1.26 5.09 29.85 0.15 1.41 16 10 C 0.17 7.06 5.62 86.38 0.49 7.54 16 11 N -0.74 -24.78 5.47 -478.53 -2.62 -27.39 16 12 C 0.70 22.10 7.99 179.05 1.43 23.53 16 13 O -0.59 -22.29 11.26 -3.98 -0.04 -22.33 16 14 N -0.63 -14.39 3.02 -816.35 -2.46 -16.85 16 15 C 0.07 1.17 6.58 86.35 0.57 1.74 16 16 C 0.05 0.66 6.98 72.08 0.50 1.16 16 17 O -0.38 -6.24 10.74 -148.98 -1.60 -7.84 16 18 C 0.06 0.90 6.17 71.94 0.44 1.35 16 19 C 0.17 3.29 3.27 44.08 0.14 3.43 16 20 H 0.10 1.70 7.89 -2.39 -0.02 1.68 16 21 C -0.07 -1.60 2.97 -19.86 -0.06 -1.66 16 22 C -0.02 -0.59 5.94 22.26 0.13 -0.45 16 23 C -0.17 -4.94 9.99 22.32 0.22 -4.72 16 24 C 0.07 2.08 7.30 22.38 0.16 2.24 16 25 F -0.16 -4.68 17.27 44.97 0.78 -3.91 16 26 C -0.16 -4.03 10.03 22.31 0.22 -3.81 16 27 C -0.09 -1.96 9.65 22.26 0.21 -1.75 16 28 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.40 11.63 6.02 -92.71 -0.56 11.07 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.52 5.77 -2.39 -0.01 1.50 16 36 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 0.91 6.98 -2.39 -0.02 0.90 16 40 H 0.11 2.97 7.37 -2.92 -0.02 2.95 16 41 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 42 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 43 H 0.15 2.48 7.95 -2.91 -0.02 2.46 16 Total: -1.00 -68.65 353.33 2.16 -66.49 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.47 Total: 18.70 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 5.32 Total: 0.94 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -4.79 Total: -97.57 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.65 Total: -30.17 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.78 Total: -3.91 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.65 2.16 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458664001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.385 kcal (2) G-P(sol) polarization free energy of solvation -68.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds