Wall clock time and date at job start Tue Mar 31 2020 13:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48497 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46814 * 299.99572 * 3 2 1 6 6 H 1.48500 * 109.47160 * 59.99716 * 3 2 1 7 7 C 1.37877 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47600 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.34781 * 120.00051 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99592 * 4.95218 * 12 11 10 14 14 N 1.34770 * 120.00115 * 184.67452 * 12 11 10 15 15 C 1.47153 * 120.98133 * 355.08857 * 14 12 11 16 16 C 1.52880 * 108.60605 * 230.49749 * 15 14 12 17 17 O 1.42960 * 109.29826 * 307.93467 * 16 15 14 18 18 C 1.42958 * 114.16419 * 62.45021 * 17 16 15 19 19 C 1.47152 * 120.98325 * 175.36846 * 14 12 11 20 20 H 1.08999 * 109.68036 * 249.20843 * 19 14 12 21 21 C 1.50698 * 109.68086 * 9.71610 * 19 14 12 22 22 C 1.38245 * 119.97051 * 64.83414 * 21 19 14 23 23 C 1.38201 * 120.02667 * 179.76557 * 22 21 19 24 24 C 1.38459 * 119.97242 * 0.50901 * 23 22 21 25 25 F 1.35099 * 120.02615 * 179.76694 * 24 23 22 26 26 C 1.38463 * 119.94735 * 359.74312 * 24 23 22 27 27 C 1.38195 * 119.97364 * 0.02562 * 26 24 23 28 28 H 0.97000 * 119.99887 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47108 * 59.99964 * 9 7 2 30 30 H 1.09003 * 109.46837 * 300.00255 * 9 7 2 31 31 H 1.08996 * 109.46917 * 59.99400 * 10 9 7 32 32 H 1.09000 * 109.46404 * 300.00096 * 10 9 7 33 33 H 0.96994 * 120.00221 * 0.02562 * 11 10 9 34 34 H 1.09003 * 109.68245 * 350.28221 * 15 14 12 35 35 H 1.09003 * 109.68037 * 110.83358 * 15 14 12 36 36 H 1.08996 * 109.58195 * 187.92029 * 16 15 14 37 37 H 1.08992 * 109.40696 * 67.84558 * 16 15 14 38 38 H 1.09007 * 109.51181 * 177.49449 * 18 17 16 39 39 H 1.08998 * 109.55971 * 57.36883 * 18 17 16 40 40 H 1.08006 * 119.99012 * 0.02562 * 22 21 19 41 41 H 1.07999 * 120.01504 * 180.25323 * 23 22 21 42 42 H 1.07998 * 120.01110 * 180.02562 * 26 24 23 43 43 H 1.08004 * 119.98653 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 2.1865 -6.0981 -0.0003 13 8 3.3991 -6.1000 0.0897 14 7 1.5159 -7.2633 -0.0949 15 6 0.0447 -7.2930 -0.0908 16 6 -0.4197 -8.3144 0.9476 17 8 0.2404 -9.5606 0.7127 18 6 1.6622 -9.5047 0.8500 19 6 2.2333 -8.5439 -0.1991 20 1 2.0939 -8.9626 -1.1957 21 6 3.7019 -8.3253 0.0587 22 6 4.1292 -7.9035 1.3039 23 6 5.4762 -7.7074 1.5430 24 6 6.3969 -7.9234 0.5316 25 9 7.7134 -7.7275 0.7628 26 6 5.9672 -8.3409 -0.7167 27 6 4.6202 -8.5409 -0.9519 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 2.8718 -3.6044 0.8894 32 1 2.8718 -3.6043 -0.8905 33 1 0.5427 -4.9308 0.0000 34 1 -0.3418 -6.3070 0.1673 35 1 -0.3193 -7.5841 -1.0762 36 1 -1.4979 -8.4527 0.8673 37 1 -0.1724 -7.9539 1.9460 38 1 2.0819 -10.4994 0.6994 39 1 1.9188 -9.1485 1.8477 40 1 3.4105 -7.7312 2.0915 41 1 5.8102 -7.3818 2.5170 42 1 6.6844 -8.5101 -1.5061 43 1 4.2847 -8.8661 -1.9257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458664019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:30 Heat of formation + Delta-G solvation = -70.490272 kcal Electronic energy + Delta-G solvation = -27636.884699 eV Core-core repulsion = 23597.566024 eV Total energy + Delta-G solvation = -4039.318675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.73353 -41.00916 -38.54893 -38.48701 -35.11931 -34.72895 -33.22922 -32.36971 -31.01352 -29.79929 -29.14538 -27.45202 -24.93715 -24.32427 -23.21591 -22.22226 -21.77960 -20.85231 -19.57325 -18.13031 -17.56855 -16.75410 -16.58706 -16.35005 -15.91505 -15.65320 -15.57477 -15.42348 -15.09693 -14.76802 -14.49857 -14.30851 -14.00248 -13.82605 -13.42010 -13.25587 -13.06056 -12.87739 -12.63108 -12.30581 -12.10494 -11.70996 -11.63715 -11.20110 -11.08414 -11.03844 -10.92580 -10.63688 -10.45690 -10.30464 -10.01138 -9.61845 -9.30397 -9.04843 -8.58679 -8.50112 -8.28144 -7.90289 -6.12424 -4.14970 1.24726 1.45368 2.66676 3.26591 3.34406 3.39836 3.42465 3.47077 3.74724 4.15113 4.35678 4.41019 4.44623 4.58884 4.70221 4.75424 4.83671 4.93748 5.01164 5.02386 5.24289 5.25081 5.28931 5.38209 5.47311 5.54081 5.68585 5.98588 6.04325 6.16233 6.27224 6.34094 6.34990 6.35800 6.57653 6.72438 6.75559 6.93076 7.01782 7.06148 7.50995 7.58337 7.86601 8.18386 8.29802 8.86383 8.92525 9.50190 10.99286 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.003655 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.985178 B = 7658.247887 C = 9743.493223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.738 5.738 12 C 0.698 3.302 13 O -0.566 6.566 14 N -0.637 5.637 15 C 0.077 3.923 16 C 0.046 3.954 17 O -0.377 6.377 18 C 0.054 3.946 19 C 0.172 3.828 20 H 0.087 0.913 21 C -0.061 4.061 22 C -0.025 4.025 23 C -0.155 4.155 24 C 0.095 3.905 25 F -0.148 7.148 26 C -0.156 4.156 27 C -0.084 4.084 28 H 0.261 0.739 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.390 0.610 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 -21.958 1.027 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.019 3.981 11 N -0.393 5.393 12 C 0.401 3.599 13 O -0.444 6.444 14 N -0.377 5.377 15 C -0.047 4.047 16 C -0.031 4.031 17 O -0.295 6.295 18 C -0.024 4.024 19 C 0.068 3.932 20 H 0.105 0.895 21 C -0.062 4.062 22 C -0.043 4.043 23 C -0.174 4.174 24 C 0.076 3.924 25 F -0.126 7.126 26 C -0.175 4.175 27 C -0.103 4.103 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.225 0.775 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.078 0.922 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.018 -21.928 1.036 22.045 hybrid contribution 0.157 1.569 0.018 1.577 sum 2.175 -20.359 1.054 20.502 Atomic orbital electron populations 1.69961 1.06094 1.26773 1.50524 1.24986 0.94883 0.99407 0.94958 0.86465 0.80214 0.83326 0.77632 1.19560 1.20918 1.20916 1.21075 0.93288 0.90312 1.51177 0.92201 1.19320 0.94243 0.91161 0.97693 1.21582 0.95601 0.80334 1.00622 1.45814 1.09841 1.05375 1.78299 1.16083 0.85535 0.80176 0.78151 1.91050 1.11336 1.84807 1.57160 1.47419 1.05635 1.04854 1.79818 1.22254 0.80620 1.01065 1.00773 1.22936 0.98048 0.84392 0.97751 1.87972 1.18673 1.31304 1.91551 1.23112 0.81232 1.00238 0.97835 1.20558 0.88805 0.83700 1.00088 0.89526 1.19242 0.92971 0.99495 0.94462 1.20434 0.94306 0.93562 0.96019 1.20863 0.93119 1.04349 0.99027 1.17621 0.77424 1.02387 0.94992 1.91459 1.32935 1.93022 1.95227 1.20856 0.96763 1.04125 0.95741 1.20558 0.91892 0.99803 0.98013 0.92903 0.96053 0.96084 0.92748 0.92859 0.77483 0.88929 0.90438 0.87385 0.92428 0.87389 0.92178 0.86589 0.85541 0.85456 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.96 5.62 -4.04 -0.02 2.94 16 11 N -0.74 -12.55 5.47 -65.23 -0.36 -12.91 16 12 C 0.70 11.38 8.03 -86.92 -0.70 10.68 16 13 O -0.57 -10.69 11.36 5.28 0.06 -10.63 16 14 N -0.64 -7.86 3.02 -172.00 -0.52 -8.38 16 15 C 0.08 0.72 6.55 -3.75 -0.02 0.70 16 16 C 0.05 0.38 6.97 37.10 0.26 0.64 16 17 O -0.38 -3.64 10.74 -35.23 -0.38 -4.01 16 18 C 0.05 0.48 6.16 37.31 0.23 0.71 16 19 C 0.17 1.86 3.29 -68.58 -0.23 1.63 16 20 H 0.09 0.86 7.90 -51.93 -0.41 0.45 16 21 C -0.06 -0.76 2.92 -104.62 -0.31 -1.06 16 22 C -0.02 -0.33 6.22 -39.59 -0.25 -0.57 16 23 C -0.15 -2.14 10.02 -39.51 -0.40 -2.54 16 24 C 0.10 1.36 7.30 -39.42 -0.29 1.07 16 25 F -0.15 -2.17 17.27 2.25 0.04 -2.13 16 26 C -0.16 -2.01 10.03 -39.51 -0.40 -2.41 16 27 C -0.08 -1.02 9.56 -39.60 -0.38 -1.40 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.39 5.79 6.03 -40.82 -0.25 5.55 16 34 H 0.09 0.84 5.77 -51.93 -0.30 0.54 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.55 6.83 -51.93 -0.35 0.19 16 40 H 0.12 1.47 7.19 -52.48 -0.38 1.09 16 41 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.12 1.22 7.96 -52.48 -0.42 0.81 16 LS Contribution 353.30 15.07 5.32 5.32 Total: -1.00 -32.14 353.30 -9.04 -41.18 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.87 Total: 2.90 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.05 Total: -2.50 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.14 Total: -46.42 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.32 Total: -14.64 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.14 -9.04 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458664019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.309 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds