Wall clock time and date at job start Tue Mar 31 2020 13:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48497 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46814 * 299.99572 * 3 2 1 6 6 H 1.48500 * 109.47160 * 59.99716 * 3 2 1 7 7 C 1.37877 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47600 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.34781 * 120.00051 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99592 * 4.95218 * 12 11 10 14 14 N 1.34770 * 120.00115 * 184.67452 * 12 11 10 15 15 C 1.47153 * 120.98133 * 355.08857 * 14 12 11 16 16 C 1.52880 * 108.60605 * 230.49749 * 15 14 12 17 17 O 1.42960 * 109.29826 * 307.93467 * 16 15 14 18 18 C 1.42958 * 114.16419 * 62.45021 * 17 16 15 19 19 C 1.47152 * 120.98325 * 175.36846 * 14 12 11 20 20 H 1.08999 * 109.68036 * 249.20843 * 19 14 12 21 21 C 1.50698 * 109.68086 * 9.71610 * 19 14 12 22 22 C 1.38245 * 119.97051 * 64.83414 * 21 19 14 23 23 C 1.38201 * 120.02667 * 179.76557 * 22 21 19 24 24 C 1.38459 * 119.97242 * 0.50901 * 23 22 21 25 25 F 1.35099 * 120.02615 * 179.76694 * 24 23 22 26 26 C 1.38463 * 119.94735 * 359.74312 * 24 23 22 27 27 C 1.38195 * 119.97364 * 0.02562 * 26 24 23 28 28 H 0.97000 * 119.99887 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47108 * 59.99964 * 9 7 2 30 30 H 1.09003 * 109.46837 * 300.00255 * 9 7 2 31 31 H 1.08996 * 109.46917 * 59.99400 * 10 9 7 32 32 H 1.09000 * 109.46404 * 300.00096 * 10 9 7 33 33 H 0.96994 * 120.00221 * 0.02562 * 11 10 9 34 34 H 1.09003 * 109.68245 * 350.28221 * 15 14 12 35 35 H 1.09003 * 109.68037 * 110.83358 * 15 14 12 36 36 H 1.08996 * 109.58195 * 187.92029 * 16 15 14 37 37 H 1.08992 * 109.40696 * 67.84558 * 16 15 14 38 38 H 1.09007 * 109.51181 * 177.49449 * 18 17 16 39 39 H 1.08998 * 109.55971 * 57.36883 * 18 17 16 40 40 H 1.08006 * 119.99012 * 0.02562 * 22 21 19 41 41 H 1.07999 * 120.01504 * 180.25323 * 23 22 21 42 42 H 1.07998 * 120.01110 * 180.02562 * 26 24 23 43 43 H 1.08004 * 119.98653 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 2.1865 -6.0981 -0.0003 13 8 3.3991 -6.1000 0.0897 14 7 1.5159 -7.2633 -0.0949 15 6 0.0447 -7.2930 -0.0908 16 6 -0.4197 -8.3144 0.9476 17 8 0.2404 -9.5606 0.7127 18 6 1.6622 -9.5047 0.8500 19 6 2.2333 -8.5439 -0.1991 20 1 2.0939 -8.9626 -1.1957 21 6 3.7019 -8.3253 0.0587 22 6 4.1292 -7.9035 1.3039 23 6 5.4762 -7.7074 1.5430 24 6 6.3969 -7.9234 0.5316 25 9 7.7134 -7.7275 0.7628 26 6 5.9672 -8.3409 -0.7167 27 6 4.6202 -8.5409 -0.9519 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 2.8718 -3.6044 0.8894 32 1 2.8718 -3.6043 -0.8905 33 1 0.5427 -4.9308 0.0000 34 1 -0.3418 -6.3070 0.1673 35 1 -0.3193 -7.5841 -1.0762 36 1 -1.4979 -8.4527 0.8673 37 1 -0.1724 -7.9539 1.9460 38 1 2.0819 -10.4994 0.6994 39 1 1.9188 -9.1485 1.8477 40 1 3.4105 -7.7312 2.0915 41 1 5.8102 -7.3818 2.5170 42 1 6.6844 -8.5101 -1.5061 43 1 4.2847 -8.8661 -1.9257 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458664019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:29 Heat of formation + Delta-G solvation = -90.333774 kcal Electronic energy + Delta-G solvation = -27637.745178 eV Core-core repulsion = 23597.566024 eV Total energy + Delta-G solvation = -4040.179154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.83547 -42.03923 -39.67627 -39.37014 -36.64348 -35.79298 -34.92597 -33.58546 -32.00439 -31.36730 -30.22291 -28.43398 -26.63065 -25.33051 -24.17431 -23.33273 -23.04831 -22.31858 -20.72975 -19.23472 -18.61774 -18.48309 -17.59514 -17.52893 -16.92432 -16.65591 -16.58222 -16.51010 -16.45452 -16.14957 -15.74428 -15.45948 -15.28472 -15.00109 -14.42489 -14.39314 -14.36311 -14.28090 -13.94265 -13.45772 -13.19317 -13.05082 -12.94787 -12.55598 -12.50927 -12.37075 -12.25341 -11.91810 -11.83799 -11.63437 -11.42745 -11.20217 -11.05512 -10.61611 -10.20445 -9.73952 -9.44841 -8.99121 -8.25256 -6.35062 0.22781 0.45557 1.39674 1.41040 1.53063 1.59231 2.17425 2.39189 2.68056 2.81529 3.02458 3.09868 3.40874 3.56403 3.70181 3.84536 3.97016 4.05081 4.10596 4.17838 4.25482 4.36865 4.48381 4.50031 4.52212 4.60814 4.75314 4.84024 4.86791 4.90953 5.02860 5.06460 5.26862 5.29389 5.34861 5.38650 5.52020 5.58705 5.59672 5.77823 5.88714 6.03910 6.09234 6.16672 6.78116 6.98280 7.34452 7.60076 8.86755 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.003655 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.985178 B = 7658.247887 C = 9743.493223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.166 3.834 11 N -0.736 5.736 12 C 0.696 3.304 13 O -0.595 6.595 14 N -0.630 5.630 15 C 0.072 3.928 16 C 0.048 3.952 17 O -0.383 6.383 18 C 0.059 3.941 19 C 0.170 3.830 20 H 0.103 0.897 21 C -0.062 4.062 22 C -0.032 4.032 23 C -0.169 4.169 24 C 0.070 3.930 25 F -0.156 7.156 26 C -0.160 4.160 27 C -0.088 4.088 28 H 0.266 0.734 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.401 0.599 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.134 0.866 37 H 0.054 0.946 38 H 0.130 0.870 39 H 0.056 0.944 40 H 0.117 0.883 41 H 0.130 0.870 42 H 0.145 0.855 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 -22.893 0.447 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.012 4.012 10 C 0.042 3.958 11 N -0.393 5.393 12 C 0.398 3.602 13 O -0.475 6.475 14 N -0.369 5.369 15 C -0.051 4.051 16 C -0.029 4.029 17 O -0.301 6.301 18 C -0.019 4.019 19 C 0.067 3.933 20 H 0.121 0.879 21 C -0.063 4.063 22 C -0.051 4.051 23 C -0.188 4.188 24 C 0.051 3.949 25 F -0.135 7.135 26 C -0.179 4.179 27 C -0.106 4.106 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.238 0.762 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.152 0.848 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.075 0.925 40 H 0.135 0.865 41 H 0.148 0.852 42 H 0.162 0.838 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.244 -22.915 0.456 22.953 hybrid contribution 0.340 1.796 0.193 1.838 sum 1.584 -21.119 0.649 21.189 Atomic orbital electron populations 1.70052 1.07436 1.27904 1.51087 1.25812 0.95758 1.02897 0.94418 0.85442 0.78940 0.79004 0.77948 1.19190 1.20170 1.20175 1.21466 0.93472 0.91973 1.51406 0.92584 1.19111 0.94219 0.91697 0.96220 1.20974 0.94419 0.81156 0.99272 1.45504 1.10243 1.04579 1.78989 1.16175 0.85242 0.80783 0.77983 1.91043 1.12673 1.85455 1.58295 1.47437 1.06986 1.04027 1.78465 1.22503 0.78588 1.01802 1.02197 1.23044 0.99359 0.83506 0.96993 1.87976 1.18788 1.31878 1.91480 1.23137 0.81085 1.00760 0.96924 1.20796 0.87688 0.83119 1.01688 0.87879 1.19469 0.94113 0.98671 0.94076 1.20526 0.94030 0.93861 0.96690 1.21037 0.93622 1.04760 0.99384 1.17896 0.77252 1.03784 0.95946 1.91430 1.33428 1.93258 1.95353 1.21146 0.97684 1.03466 0.95604 1.20908 0.91537 0.99149 0.99023 0.92535 0.97393 0.97401 0.94104 0.94178 0.76207 0.88780 0.88930 0.84797 0.92750 0.85246 0.92533 0.86475 0.85192 0.83758 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.60 13.29 21.45 0.28 -53.31 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.03 1.25 5.09 29.85 0.15 1.40 16 10 C 0.17 7.07 5.62 86.38 0.49 7.56 16 11 N -0.74 -24.81 5.47 -478.54 -2.62 -27.43 16 12 C 0.70 22.13 8.03 179.06 1.44 23.57 16 13 O -0.59 -22.33 11.36 -4.01 -0.05 -22.37 16 14 N -0.63 -14.40 3.02 -816.35 -2.47 -16.86 16 15 C 0.07 1.17 6.55 86.22 0.56 1.74 16 16 C 0.05 0.66 6.97 71.94 0.50 1.16 16 17 O -0.38 -6.24 10.74 -148.98 -1.60 -7.84 16 18 C 0.06 0.90 6.16 72.08 0.44 1.34 16 19 C 0.17 3.28 3.29 44.22 0.15 3.42 16 20 H 0.10 1.70 7.90 -2.39 -0.02 1.68 16 21 C -0.06 -1.47 2.92 -19.86 -0.06 -1.53 16 22 C -0.03 -0.85 6.22 22.26 0.14 -0.71 16 23 C -0.17 -4.76 10.02 22.31 0.22 -4.54 16 24 C 0.07 2.03 7.30 22.38 0.16 2.19 16 25 F -0.16 -4.68 17.27 44.97 0.78 -3.90 16 26 C -0.16 -4.01 10.03 22.31 0.22 -3.79 16 27 C -0.09 -1.99 9.56 22.26 0.21 -1.78 16 28 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.40 11.64 6.03 -92.71 -0.56 11.08 16 34 H 0.09 1.52 5.77 -2.39 -0.01 1.51 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.06 0.92 6.83 -2.39 -0.02 0.91 16 40 H 0.12 2.95 7.19 -2.91 -0.02 2.93 16 41 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 42 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 43 H 0.15 2.54 7.96 -2.91 -0.02 2.52 16 Total: -1.00 -68.71 353.30 2.16 -66.55 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.47 Total: 18.65 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.33 Total: 0.98 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -4.80 Total: -97.60 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.65 Total: -30.22 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.78 Total: -3.90 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -68.71 2.16 -66.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458664019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.787 kcal (2) G-P(sol) polarization free energy of solvation -68.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds