Wall clock time and date at job start Tue Mar 31 2020 12:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46991 * 2 1 4 4 S 1.81404 * 109.47104 * 240.00688 * 2 1 3 5 5 C 1.81401 * 102.99982 * 64.99548 * 4 2 1 6 6 C 1.50703 * 109.46945 * 179.97438 * 5 4 2 7 7 C 1.38638 * 119.74898 * 269.72913 * 6 5 4 8 8 C 1.37612 * 120.24810 * 179.71992 * 7 6 5 9 9 C 1.40717 * 119.74429 * 0.57275 * 8 7 6 10 10 C 1.41392 * 120.24808 * 179.68177 * 9 8 7 11 11 H 1.07995 * 120.00543 * 155.31184 * 10 9 8 12 12 C 1.39954 * 119.99662 * 335.30756 * 10 9 8 13 13 N 1.30817 * 120.00069 * 342.23851 * 12 10 9 14 14 Si 1.86801 * 119.99911 * 162.23242 * 12 10 9 15 15 H 1.48501 * 109.47059 * 94.66474 * 14 12 10 16 16 H 1.48498 * 109.47284 * 214.66563 * 14 12 10 17 17 H 1.48502 * 109.47136 * 334.66909 * 14 12 10 18 18 C 1.40718 * 119.51264 * 359.70412 * 9 8 7 19 19 C 1.37627 * 119.74182 * 359.97438 * 18 9 8 20 20 C 1.50699 * 109.47268 * 120.00455 * 2 1 3 21 21 O 1.20824 * 120.00036 * 100.00061 * 20 2 1 22 22 O 1.34228 * 119.99845 * 280.00060 * 20 2 1 23 23 C 1.45203 * 116.99612 * 180.02562 * 22 20 2 24 24 C 1.52989 * 109.47373 * 60.00084 * 23 22 20 25 25 C 1.53003 * 109.47104 * 180.02562 * 23 22 20 26 26 C 1.53002 * 109.47200 * 299.99774 * 23 22 20 27 27 H 1.08996 * 109.47260 * 59.99825 * 1 2 3 28 28 H 1.09010 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47388 * 299.99507 * 1 2 3 30 30 H 1.08995 * 109.47314 * 299.99900 * 5 4 2 31 31 H 1.08998 * 109.46741 * 60.00363 * 5 4 2 32 32 H 1.08006 * 119.87386 * 359.97438 * 7 6 5 33 33 H 1.08003 * 120.13246 * 180.27426 * 8 7 6 34 34 H 0.97002 * 119.99895 * 179.97438 * 13 12 10 35 35 H 1.07995 * 120.13357 * 179.97438 * 18 9 8 36 36 H 1.07997 * 119.87098 * 180.02562 * 19 18 9 37 37 H 1.09002 * 109.47414 * 59.99781 * 24 23 22 38 38 H 1.09009 * 109.47341 * 180.02562 * 24 23 22 39 39 H 1.09001 * 109.47311 * 299.99547 * 24 23 22 40 40 H 1.09001 * 109.47103 * 59.99436 * 25 23 22 41 41 H 1.08996 * 109.47280 * 179.97438 * 25 23 22 42 42 H 1.08999 * 109.46428 * 300.00071 * 25 23 22 43 43 H 1.09001 * 109.46757 * 59.99989 * 26 23 22 44 44 H 1.08996 * 109.47187 * 180.02562 * 26 23 22 45 45 H 1.09001 * 109.46983 * 300.00550 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8550 -1.4813 5 6 1.5663 0.2156 -2.8309 6 6 1.9983 -0.3685 -4.1513 7 6 3.2213 -0.0081 -4.6958 8 6 3.6285 -0.5396 -5.8980 9 6 2.7930 -1.4428 -6.5808 10 6 3.1979 -1.9902 -7.8200 11 1 2.7961 -2.9370 -8.1493 12 6 4.1194 -1.3049 -8.6200 13 7 4.3439 -0.0324 -8.4157 14 14 5.0289 -2.2073 -9.9793 15 1 4.3054 -2.0267 -11.2635 16 1 6.4032 -1.6589 -10.1041 17 1 5.1010 -3.6538 -9.6511 18 6 1.5513 -1.7971 -6.0214 19 6 1.1675 -1.2582 -4.8146 20 6 2.0323 -0.7105 1.2304 21 8 2.4050 -1.8574 1.1559 22 8 2.0657 -0.0692 2.4091 23 6 2.5621 -0.8153 3.5516 24 6 4.0015 -1.2595 3.2843 25 6 2.5249 0.0736 4.7964 26 6 1.6822 -2.0463 3.7781 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 0.4791 0.2883 -2.8037 31 1 2.0000 1.2087 -2.7141 32 1 3.8586 0.6894 -4.1724 33 1 4.5836 -0.2609 -6.3183 34 1 4.9828 0.4424 -8.9699 35 1 0.9020 -2.4890 -6.5371 36 1 0.2151 -1.5289 -4.3832 37 1 4.6284 -0.3825 3.1229 38 1 4.3740 -1.8200 4.1419 39 1 4.0276 -1.8929 2.3977 40 1 1.4992 0.3897 4.9866 41 1 2.8971 -0.4866 5.6541 42 1 3.1515 0.9508 4.6352 43 1 1.7083 -2.6796 2.8914 44 1 2.0545 -2.6061 4.6360 45 1 0.6567 -1.7298 3.9685 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000479709436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:54 Heat of formation + Delta-G solvation = -84.658138 kcal Electronic energy + Delta-G solvation = -24038.232558 eV Core-core repulsion = 20532.219943 eV Total energy + Delta-G solvation = -3506.012615 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95224 -37.66001 -37.20862 -34.48263 -34.04444 -33.08255 -31.23664 -29.34763 -27.68926 -27.63082 -27.56013 -25.31608 -24.00227 -22.14873 -21.05691 -20.18168 -19.64838 -17.38761 -17.36368 -16.90979 -16.14960 -15.86695 -15.34417 -14.72863 -14.46677 -14.36498 -14.22878 -13.97467 -13.82906 -13.61665 -13.12421 -12.79430 -12.59404 -12.50478 -12.35877 -12.19834 -12.15433 -12.05258 -11.98528 -11.91188 -11.63290 -11.58489 -11.33628 -11.09121 -10.93958 -10.72333 -10.58103 -10.40356 -10.02897 -9.75923 -9.53066 -9.44971 -9.15107 -7.53329 -7.34627 -7.28366 -6.84876 -4.41405 1.46467 2.15778 2.57507 2.68815 2.94785 3.03123 3.05027 3.09694 3.36627 3.87662 4.41550 4.47632 4.48462 4.57866 4.64457 4.72559 4.91637 5.19678 5.27189 5.36327 5.41306 5.43964 5.48659 5.55441 5.58882 5.60442 5.62193 5.71837 5.75213 5.88929 6.01485 6.07558 6.14652 6.29410 6.34417 6.36859 6.90217 6.99444 7.20474 7.28657 7.54659 7.72912 7.77422 7.98602 8.03086 8.21861 8.56343 8.81037 8.89434 10.08811 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.002249 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.209590 B =12446.532798 C =12790.341873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.112 0.888 4 S -0.205 6.205 5 C -0.014 4.014 6 C -0.211 4.211 7 C -0.078 4.078 8 C -0.168 4.168 9 C 0.117 3.883 10 C -0.454 4.454 11 H 0.080 0.920 12 C 0.075 3.925 13 N -0.786 5.786 14 Si 0.909 3.091 15 H -0.270 1.270 16 H -0.274 1.274 17 H -0.259 1.259 18 C -0.228 4.228 19 C -0.065 4.065 20 C 0.486 3.514 21 O -0.479 6.479 22 O -0.350 6.350 23 C 0.116 3.884 24 C -0.184 4.184 25 C -0.140 4.140 26 C -0.183 4.183 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.282 0.718 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 2.712 19.885 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.212 4.212 3 H 0.130 0.870 4 S 0.026 5.974 5 C -0.161 4.161 6 C -0.215 4.215 7 C -0.098 4.098 8 C -0.187 4.187 9 C 0.114 3.886 10 C -0.484 4.484 11 H 0.098 0.902 12 C -0.144 4.144 13 N -0.411 5.411 14 Si 0.733 3.267 15 H -0.195 1.195 16 H -0.199 1.199 17 H -0.183 1.183 18 C -0.248 4.248 19 C -0.085 4.085 20 C 0.326 3.674 21 O -0.364 6.364 22 O -0.268 6.268 23 C 0.080 3.920 24 C -0.241 4.241 25 C -0.197 4.197 26 C -0.240 4.240 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.019 1.629 19.861 20.155 hybrid contribution -0.172 0.855 -0.486 0.999 sum -3.191 2.484 19.375 19.792 Atomic orbital electron populations 1.21978 0.90596 1.03986 1.03317 1.23009 1.00803 1.03631 0.93732 0.87035 1.87985 1.75030 1.37925 0.96444 1.22156 1.01778 0.98456 0.93661 1.18326 0.99191 1.08590 0.95425 1.20522 0.94599 0.98756 0.95897 1.21287 1.00688 1.02263 0.94488 1.17681 0.89522 0.89591 0.91809 1.19675 1.20834 1.05895 1.01953 0.90194 1.25966 0.95443 0.94379 0.98584 1.69821 1.27568 1.08159 1.35559 0.86290 0.79034 0.81036 0.80377 1.19488 1.19932 1.18295 1.20960 0.97777 1.07540 0.98502 1.20371 0.97251 0.95951 0.94945 1.22669 0.75116 0.85630 0.83943 1.90614 1.42558 1.17862 1.85411 1.86535 1.77123 1.45956 1.17178 1.22198 0.94236 0.91782 0.83761 1.22498 0.94450 1.02754 1.04446 1.21845 1.03255 0.99878 0.94687 1.22494 0.99488 0.97806 1.04248 0.90570 0.90820 0.91382 0.90932 0.91054 0.89277 0.86337 0.90691 0.88768 0.89206 0.91921 0.91062 0.89554 0.91523 0.90349 0.91452 0.89637 0.91057 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.08 37.16 0.34 -1.18 16 2 C -0.08 -1.09 3.29 -27.88 -0.09 -1.18 16 3 H 0.11 1.30 8.14 -51.92 -0.42 0.88 16 4 S -0.21 -3.56 20.38 -107.50 -2.19 -5.75 16 5 C -0.01 -0.24 5.76 36.01 0.21 -0.03 16 6 C -0.21 -4.52 5.16 -104.33 -0.54 -5.06 16 7 C -0.08 -1.79 9.67 -39.66 -0.38 -2.18 16 8 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 9 C 0.12 3.09 5.57 -106.82 -0.60 2.50 16 10 C -0.45 -11.85 9.05 -37.74 -0.34 -12.20 16 11 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 12 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 13 N -0.79 -19.88 10.97 55.55 0.61 -19.27 16 14 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 15 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 16 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 18 C -0.23 -5.54 9.80 -38.87 -0.38 -5.92 16 19 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 20 C 0.49 6.76 6.44 36.01 0.23 7.00 16 21 O -0.48 -7.79 11.55 -18.75 -0.22 -8.01 16 22 O -0.35 -4.24 9.89 -39.25 -0.39 -4.62 16 23 C 0.12 1.17 1.13 -90.62 -0.10 1.06 16 24 C -0.18 -1.89 8.37 37.15 0.31 -1.58 16 25 C -0.14 -1.00 8.85 37.16 0.33 -0.67 16 26 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16 27 H 0.08 0.78 6.92 -51.93 -0.36 0.42 16 28 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.11 7.08 -51.93 -0.37 0.75 16 31 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 32 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.12 3.14 6.18 -52.48 -0.32 2.81 16 34 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 35 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.09 1.12 5.89 -51.93 -0.31 0.82 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 1.04 5.89 -51.93 -0.31 0.73 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -28.23 379.57 -10.14 -38.37 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.13 Total: 5.88 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -1.52 Total: -25.60 kcal Atomic # 7 Polarization: -19.88 SS G_CDS: 0.61 Total: -19.27 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.60 Total: -12.63 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.19 Total: -5.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.23 -10.14 -38.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000479709436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.285 kcal (2) G-P(sol) polarization free energy of solvation -28.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds