Wall clock time and date at job start Tue Mar 31 2020 12:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46991 * 2 1 4 4 S 1.81404 * 109.47104 * 240.00688 * 2 1 3 5 5 C 1.81401 * 102.99982 * 64.99548 * 4 2 1 6 6 C 1.50703 * 109.46945 * 179.97438 * 5 4 2 7 7 C 1.38638 * 119.74898 * 269.72913 * 6 5 4 8 8 C 1.37612 * 120.24810 * 179.71992 * 7 6 5 9 9 C 1.40717 * 119.74429 * 0.57275 * 8 7 6 10 10 C 1.41392 * 120.24808 * 179.68177 * 9 8 7 11 11 H 1.07995 * 120.00543 * 155.31184 * 10 9 8 12 12 C 1.39954 * 119.99662 * 335.30756 * 10 9 8 13 13 N 1.30817 * 120.00069 * 342.23851 * 12 10 9 14 14 Si 1.86801 * 119.99911 * 162.23242 * 12 10 9 15 15 H 1.48501 * 109.47059 * 94.66474 * 14 12 10 16 16 H 1.48498 * 109.47284 * 214.66563 * 14 12 10 17 17 H 1.48502 * 109.47136 * 334.66909 * 14 12 10 18 18 C 1.40718 * 119.51264 * 359.70412 * 9 8 7 19 19 C 1.37627 * 119.74182 * 359.97438 * 18 9 8 20 20 C 1.50699 * 109.47268 * 120.00455 * 2 1 3 21 21 O 1.20824 * 120.00036 * 100.00061 * 20 2 1 22 22 O 1.34228 * 119.99845 * 280.00060 * 20 2 1 23 23 C 1.45203 * 116.99612 * 180.02562 * 22 20 2 24 24 C 1.52989 * 109.47373 * 60.00084 * 23 22 20 25 25 C 1.53003 * 109.47104 * 180.02562 * 23 22 20 26 26 C 1.53002 * 109.47200 * 299.99774 * 23 22 20 27 27 H 1.08996 * 109.47260 * 59.99825 * 1 2 3 28 28 H 1.09010 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47388 * 299.99507 * 1 2 3 30 30 H 1.08995 * 109.47314 * 299.99900 * 5 4 2 31 31 H 1.08998 * 109.46741 * 60.00363 * 5 4 2 32 32 H 1.08006 * 119.87386 * 359.97438 * 7 6 5 33 33 H 1.08003 * 120.13246 * 180.27426 * 8 7 6 34 34 H 0.97002 * 119.99895 * 179.97438 * 13 12 10 35 35 H 1.07995 * 120.13357 * 179.97438 * 18 9 8 36 36 H 1.07997 * 119.87098 * 180.02562 * 19 18 9 37 37 H 1.09002 * 109.47414 * 59.99781 * 24 23 22 38 38 H 1.09009 * 109.47341 * 180.02562 * 24 23 22 39 39 H 1.09001 * 109.47311 * 299.99547 * 24 23 22 40 40 H 1.09001 * 109.47103 * 59.99436 * 25 23 22 41 41 H 1.08996 * 109.47280 * 179.97438 * 25 23 22 42 42 H 1.08999 * 109.46428 * 300.00071 * 25 23 22 43 43 H 1.09001 * 109.46757 * 59.99989 * 26 23 22 44 44 H 1.08996 * 109.47187 * 180.02562 * 26 23 22 45 45 H 1.09001 * 109.46983 * 300.00550 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8550 -1.4813 5 6 1.5663 0.2156 -2.8309 6 6 1.9983 -0.3685 -4.1513 7 6 3.2213 -0.0081 -4.6958 8 6 3.6285 -0.5396 -5.8980 9 6 2.7930 -1.4428 -6.5808 10 6 3.1979 -1.9902 -7.8200 11 1 2.7961 -2.9370 -8.1493 12 6 4.1194 -1.3049 -8.6200 13 7 4.3439 -0.0324 -8.4157 14 14 5.0289 -2.2073 -9.9793 15 1 4.3054 -2.0267 -11.2635 16 1 6.4032 -1.6589 -10.1041 17 1 5.1010 -3.6538 -9.6511 18 6 1.5513 -1.7971 -6.0214 19 6 1.1675 -1.2582 -4.8146 20 6 2.0323 -0.7105 1.2304 21 8 2.4050 -1.8574 1.1559 22 8 2.0657 -0.0692 2.4091 23 6 2.5621 -0.8153 3.5516 24 6 4.0015 -1.2595 3.2843 25 6 2.5249 0.0736 4.7964 26 6 1.6822 -2.0463 3.7781 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 0.4791 0.2883 -2.8037 31 1 2.0000 1.2087 -2.7141 32 1 3.8586 0.6894 -4.1724 33 1 4.5836 -0.2609 -6.3183 34 1 4.9828 0.4424 -8.9699 35 1 0.9020 -2.4890 -6.5371 36 1 0.2151 -1.5289 -4.3832 37 1 4.6284 -0.3825 3.1229 38 1 4.3740 -1.8200 4.1419 39 1 4.0276 -1.8929 2.3977 40 1 1.4992 0.3897 4.9866 41 1 2.8971 -0.4866 5.6541 42 1 3.1515 0.9508 4.6352 43 1 1.7083 -2.6796 2.8914 44 1 2.0545 -2.6061 4.6360 45 1 0.6567 -1.7298 3.9685 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000479709436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:53 Heat of formation + Delta-G solvation = -96.092897 kcal Electronic energy + Delta-G solvation = -24038.728407 eV Core-core repulsion = 20532.219943 eV Total energy + Delta-G solvation = -3506.508463 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94184 -39.47937 -38.18273 -35.86023 -35.37940 -34.02957 -32.97055 -31.19980 -29.28762 -28.41266 -28.31174 -26.28323 -25.73830 -23.10828 -22.91527 -21.90203 -20.63820 -19.24488 -18.42599 -17.95807 -17.23788 -17.12498 -16.88067 -16.06160 -15.75393 -15.66054 -15.49023 -15.31826 -15.21130 -14.55643 -14.34875 -14.09897 -13.85570 -13.76410 -13.51406 -13.39011 -13.18642 -13.11495 -12.97390 -12.94167 -12.88521 -12.72487 -12.63940 -12.45877 -12.39961 -12.13095 -12.07550 -11.53779 -11.43749 -11.29970 -11.04168 -11.02417 -10.74120 -9.38501 -9.19315 -8.68278 -8.64832 -6.34807 0.17085 0.97998 1.13016 1.16287 1.37595 1.45406 1.52863 1.65403 1.83504 2.19652 2.75026 3.50781 3.71609 3.72747 3.74391 3.80237 3.92506 3.96107 4.15141 4.15946 4.50841 4.53379 4.57455 4.58581 4.61128 4.66379 4.73364 4.74171 4.80078 4.86164 4.86887 5.03313 5.08201 5.11890 5.13543 5.23518 5.27238 5.33906 5.42817 5.46187 5.68276 5.92633 6.08181 6.17643 6.35578 6.67225 6.70779 6.91025 7.00273 8.29547 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.002249 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.209590 B =12446.532798 C =12790.341873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 H 0.133 0.867 4 S -0.257 6.257 5 C -0.004 4.004 6 C -0.200 4.200 7 C -0.084 4.084 8 C -0.193 4.193 9 C 0.084 3.916 10 C -0.496 4.496 11 H 0.076 0.924 12 C 0.035 3.965 13 N -0.820 5.820 14 Si 0.982 3.018 15 H -0.260 1.260 16 H -0.265 1.265 17 H -0.261 1.261 18 C -0.245 4.245 19 C -0.069 4.069 20 C 0.485 3.515 21 O -0.508 6.508 22 O -0.347 6.347 23 C 0.106 3.894 24 C -0.183 4.183 25 C -0.134 4.134 26 C -0.180 4.180 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.290 0.710 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 3.786 22.357 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.197 4.197 3 H 0.151 0.849 4 S -0.027 6.027 5 C -0.151 4.151 6 C -0.203 4.203 7 C -0.104 4.104 8 C -0.212 4.212 9 C 0.081 3.919 10 C -0.525 4.525 11 H 0.094 0.906 12 C -0.181 4.181 13 N -0.445 5.445 14 Si 0.802 3.198 15 H -0.185 1.185 16 H -0.189 1.189 17 H -0.184 1.184 18 C -0.265 4.265 19 C -0.089 4.089 20 C 0.327 3.673 21 O -0.396 6.396 22 O -0.265 6.265 23 C 0.070 3.930 24 C -0.240 4.240 25 C -0.191 4.191 26 C -0.237 4.237 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.926 2.718 22.322 22.827 hybrid contribution 0.025 0.575 -0.923 1.088 sum -3.901 3.294 21.399 22.000 Atomic orbital electron populations 1.21991 0.88466 1.03939 1.05097 1.23013 1.02305 1.03506 0.90827 0.84879 1.88128 1.75983 1.39064 0.99491 1.22063 1.03397 0.98581 0.91027 1.18722 0.97813 1.06837 0.96952 1.20774 0.95680 0.98809 0.95173 1.21258 1.00431 1.03671 0.95887 1.18021 0.90641 0.90628 0.92617 1.19886 1.23183 1.06480 1.02981 0.90582 1.26784 0.95601 0.94938 1.00740 1.69866 1.28332 1.09381 1.36938 0.85202 0.77902 0.79356 0.77332 1.18485 1.18939 1.18434 1.21177 0.97455 1.08203 0.99690 1.20704 0.98503 0.95486 0.94171 1.22801 0.74546 0.85249 0.84690 1.90627 1.43849 1.19185 1.85923 1.86527 1.76866 1.46016 1.17096 1.22562 0.93820 0.92607 0.83991 1.22476 0.95087 1.02468 1.03954 1.21870 1.04000 0.99643 0.93595 1.22460 1.00125 0.97436 1.03694 0.89398 0.91811 0.88905 0.88354 0.89233 0.87572 0.88130 0.89980 0.88327 0.86310 0.91807 0.88892 0.92717 0.90782 0.88181 0.91213 0.92567 0.89016 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.08 71.98 0.65 -1.86 16 2 C -0.07 -1.60 3.29 29.85 0.10 -1.50 16 3 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 4 S -0.26 -8.52 20.38 -56.49 -1.15 -9.68 16 5 C 0.00 -0.13 5.76 71.24 0.41 0.28 16 6 C -0.20 -8.35 5.16 -19.67 -0.10 -8.45 16 7 C -0.08 -3.93 9.67 22.22 0.21 -3.71 16 8 C -0.19 -10.32 8.70 22.73 0.20 -10.12 16 9 C 0.08 4.62 5.57 -21.29 -0.12 4.50 16 10 C -0.50 -27.16 9.05 23.46 0.21 -26.95 16 11 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 12 C 0.03 1.78 5.14 85.26 0.44 2.22 16 13 N -0.82 -42.98 10.97 21.83 0.24 -42.74 16 14 Si 0.98 38.48 29.59 68.60 2.03 40.51 16 15 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 16 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 17 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 18 C -0.25 -12.23 9.80 22.73 0.22 -12.01 16 19 C -0.07 -3.00 9.67 22.22 0.21 -2.79 16 20 C 0.49 12.80 6.44 71.24 0.46 13.26 16 21 O -0.51 -16.46 11.55 21.97 0.25 -16.21 16 22 O -0.35 -7.66 9.89 -51.40 -0.51 -8.16 16 23 C 0.11 1.90 1.13 -10.80 -0.01 1.88 16 24 C -0.18 -3.52 8.37 71.98 0.60 -2.92 16 25 C -0.13 -1.47 8.85 71.98 0.64 -0.84 16 26 C -0.18 -3.16 8.37 71.98 0.60 -2.55 16 27 H 0.09 1.43 6.92 -2.39 -0.02 1.42 16 28 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.10 2.64 7.08 -2.39 -0.02 2.62 16 31 H 0.09 2.54 8.08 -2.39 -0.02 2.52 16 32 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 33 H 0.10 5.63 6.18 -2.91 -0.02 5.61 16 34 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 35 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 36 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.05 1.43 5.89 -2.39 -0.01 1.41 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 1.35 5.89 -2.39 -0.01 1.33 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -64.77 379.57 6.56 -58.21 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.97 Total: 29.63 kcal Atomic # 6 Polarization: -56.29 SS G_CDS: 4.73 Total: -51.56 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.24 Total: -42.74 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.25 Total: -24.37 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.15 Total: -9.68 kcal Total: -64.77 6.56 -58.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000479709436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.888 kcal (2) G-P(sol) polarization free energy of solvation -64.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds