Wall clock time and date at job start Tue Mar 31 2020 13:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99820 * 2 1 4 4 H 1.48495 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47187 * 300.00070 * 3 2 1 6 6 H 1.48504 * 109.46971 * 59.99831 * 3 2 1 7 7 C 1.37873 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47069 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47092 * 304.99824 * 10 9 7 12 12 N 1.46500 * 109.47094 * 64.99760 * 10 9 7 13 13 C 1.34778 * 119.99947 * 204.99788 * 12 10 9 14 14 O 1.21658 * 120.00095 * 0.02562 * 13 12 10 15 15 C 1.46657 * 119.99657 * 180.02562 * 13 12 10 16 16 C 1.34641 * 119.99672 * 173.24643 * 15 13 12 17 17 C 1.47405 * 119.99873 * 348.71695 * 16 15 13 18 18 C 1.40136 * 120.94989 * 312.17878 * 17 16 15 19 19 C 1.37999 * 118.96589 * 180.25001 * 18 17 16 20 20 N 1.31881 * 120.92608 * 0.02562 * 19 18 17 21 21 C 1.31879 * 122.11436 * 359.97438 * 20 19 18 22 22 C 1.38003 * 120.92734 * 359.97438 * 21 20 19 23 23 C 1.50696 * 109.47048 * 184.99968 * 10 9 7 24 24 C 1.38245 * 119.99869 * 279.72896 * 23 10 9 25 25 C 1.38238 * 119.99765 * 179.81406 * 24 23 10 26 26 C 1.38238 * 119.99837 * 0.38957 * 25 24 23 27 27 C 1.38234 * 120.00064 * 359.85936 * 26 25 24 28 28 C 1.38229 * 120.00098 * 359.95958 * 27 26 25 29 29 H 0.96998 * 119.99834 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47045 * 60.00092 * 9 7 2 31 31 H 1.09000 * 109.47233 * 299.99805 * 9 7 2 32 32 H 0.97006 * 120.00195 * 25.00688 * 12 10 9 33 33 H 1.07996 * 120.00252 * 353.23442 * 15 13 12 34 34 H 1.07997 * 119.99863 * 168.72265 * 16 15 13 35 35 H 1.07996 * 120.51745 * 0.27913 * 18 17 16 36 36 H 1.07998 * 119.53722 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.53845 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.52300 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.99887 * 359.97438 * 24 23 10 40 40 H 1.08005 * 119.99785 * 180.23150 * 25 24 23 41 41 H 1.08006 * 119.99569 * 179.84188 * 26 25 24 42 42 H 1.08000 * 119.99672 * 179.97438 * 27 26 25 43 43 H 1.07997 * 119.99901 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.9302 -3.5555 -0.8395 12 7 3.0055 -3.6532 1.2542 13 6 4.2302 -4.2138 1.3031 14 8 4.7047 -4.7267 0.3072 15 6 4.9908 -4.2055 2.5570 16 6 6.1518 -4.8816 2.6446 17 6 6.5369 -5.8258 1.5801 18 6 5.6276 -6.7757 1.0957 19 6 6.0332 -7.6431 0.1020 20 7 7.2556 -7.5865 -0.3897 21 6 8.1429 -6.7089 0.0367 22 6 7.8243 -5.8022 1.0270 23 6 1.4962 -4.9637 -0.1220 24 6 0.8985 -5.5257 0.9907 25 6 0.2079 -6.7177 0.8763 26 6 0.1220 -7.3519 -0.3490 27 6 0.7240 -6.7925 -1.4606 28 6 1.4114 -5.5986 -1.3470 29 1 -0.4850 0.8400 -0.0004 30 1 0.6249 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.6273 -3.2440 2.0483 33 1 4.6198 -3.6569 3.4101 34 1 6.8009 -4.7323 3.4947 35 1 4.6250 -6.8279 1.4936 36 1 5.3399 -8.3786 -0.2784 37 1 9.1327 -6.6997 -0.3952 38 1 8.5559 -5.0860 1.3710 39 1 0.9688 -5.0321 1.9487 40 1 -0.2622 -7.1549 1.7448 41 1 -0.4154 -8.2845 -0.4378 42 1 0.6572 -7.2882 -2.4178 43 1 1.8814 -5.1613 -2.2154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492185879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:25 Heat of formation + Delta-G solvation = 43.009829 kcal Electronic energy + Delta-G solvation = -26424.989204 eV Core-core repulsion = 22821.361487 eV Total energy + Delta-G solvation = -3603.627717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21067 -39.42840 -38.41646 -35.48760 -34.17039 -32.78616 -31.45988 -31.05601 -30.54346 -30.19738 -28.80060 -25.37915 -24.17001 -23.20457 -22.34632 -22.08466 -21.80184 -19.85162 -19.34268 -17.52674 -16.84601 -16.22840 -16.09039 -15.92311 -15.62309 -15.09121 -14.89531 -14.60692 -14.27834 -14.04119 -13.99935 -13.51276 -13.35080 -13.15083 -13.03753 -12.72395 -12.55917 -12.23727 -12.14532 -11.63051 -11.58236 -11.16839 -10.96886 -10.77666 -10.62425 -10.53647 -10.33182 -9.82316 -9.56808 -9.34103 -9.31310 -9.01548 -8.58759 -8.53240 -8.45105 -8.39511 -8.21012 -6.12868 -4.16442 0.77514 1.37018 1.74682 1.77127 1.91780 3.23110 3.32055 3.36222 3.60969 3.74840 4.02512 4.21305 4.36714 4.55867 4.62064 4.89954 5.10439 5.19319 5.23730 5.24328 5.24442 5.30717 5.35594 5.39087 5.51398 5.75472 5.86071 5.88017 5.90618 5.91081 6.03122 6.15590 6.27906 6.32765 6.39990 6.48298 6.54955 6.81584 6.82754 6.85419 6.87245 7.07938 7.37191 7.45449 7.58377 7.83864 8.08668 8.15585 8.22041 8.71494 8.89773 9.48984 10.97660 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.004631 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.714666 B = 6044.173324 C = 8056.718568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.185 3.815 11 H 0.087 0.913 12 N -0.692 5.692 13 C 0.530 3.470 14 O -0.537 6.537 15 C -0.180 4.180 16 C -0.054 4.054 17 C -0.008 4.008 18 C -0.098 4.098 19 C 0.090 3.910 20 N -0.487 5.487 21 C 0.087 3.913 22 C -0.162 4.162 23 C -0.070 4.070 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.122 4.122 28 C -0.107 4.107 29 H 0.261 0.739 30 H 0.034 0.966 31 H 0.024 0.976 32 H 0.401 0.599 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.929 -13.270 6.376 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.080 3.920 11 H 0.105 0.895 12 N -0.339 5.339 13 C 0.318 3.682 14 O -0.417 6.417 15 C -0.201 4.201 16 C -0.074 4.074 17 C -0.016 4.016 18 C -0.117 4.117 19 C -0.066 4.066 20 N -0.197 5.197 21 C -0.070 4.070 22 C -0.182 4.182 23 C -0.071 4.071 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.140 4.140 28 C -0.126 4.126 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.236 0.764 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.148 0.852 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.309 -14.079 4.990 17.093 hybrid contribution -0.230 2.068 1.052 2.332 sum 8.079 -12.011 6.042 15.686 Atomic orbital electron populations 1.69968 1.06018 1.26727 1.50314 1.24984 0.94789 0.99235 0.95099 0.86550 0.80157 0.83746 0.77663 1.19753 1.20946 1.20998 1.21162 0.93084 0.90375 1.51197 0.92386 1.19396 0.93233 0.90187 0.98585 1.20235 0.93394 0.91953 0.86391 0.89542 1.45959 1.16571 1.57133 1.14282 1.18446 0.81769 0.79113 0.88911 1.90846 1.68982 1.45290 1.36560 1.23280 0.96297 1.02487 0.98040 1.22247 0.95015 0.93280 0.96849 1.19191 0.93388 0.94164 0.94898 1.22023 0.98596 0.94391 0.96738 1.22449 0.92704 0.97844 0.93578 1.67483 1.02993 1.22591 1.26625 1.22477 0.98635 0.91666 0.94269 1.22134 0.96334 1.00574 0.99118 1.20524 0.96846 0.96407 0.93314 1.20902 0.97735 0.95614 0.98450 1.21040 0.99870 0.96035 0.97359 1.20996 1.01019 1.00038 0.93206 1.21040 0.98474 0.96167 0.98293 1.21011 0.99085 0.95061 0.97429 0.92897 0.94790 0.95740 0.76438 0.84661 0.84376 0.85795 0.83393 0.83319 0.85237 0.86623 0.86765 0.86847 0.86627 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -13.58 8.84 -34.44 -0.30 -13.89 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.55 4.50 -27.88 -0.13 0.42 16 10 C 0.18 3.64 2.12 -69.08 -0.15 3.50 16 11 H 0.09 1.91 7.44 -51.93 -0.39 1.52 16 12 N -0.69 -11.81 4.02 -56.26 -0.23 -12.04 16 13 C 0.53 8.76 6.95 -12.86 -0.09 8.67 16 14 O -0.54 -10.42 12.13 5.23 0.06 -10.36 16 15 C -0.18 -2.23 9.96 -37.46 -0.37 -2.60 16 16 C -0.05 -0.61 9.84 -37.12 -0.37 -0.97 16 17 C -0.01 -0.11 4.36 -104.74 -0.46 -0.57 16 18 C -0.10 -1.40 6.90 -38.96 -0.27 -1.67 16 19 C 0.09 1.30 11.17 -17.62 -0.20 1.11 16 20 N -0.49 -7.33 10.34 -13.35 -0.14 -7.47 16 21 C 0.09 1.13 11.17 -17.62 -0.20 0.94 16 22 C -0.16 -2.01 9.90 -38.96 -0.39 -2.40 16 23 C -0.07 -1.25 4.91 -104.62 -0.51 -1.76 16 24 C -0.11 -1.74 9.33 -39.58 -0.37 -2.11 16 25 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 26 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 27 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 28 C -0.11 -1.83 9.67 -39.59 -0.38 -2.21 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.40 6.24 8.58 -40.82 -0.35 5.89 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.77 7.51 -52.49 -0.39 1.37 16 36 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.73 7.71 -52.49 -0.40 1.32 16 40 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 41 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.99 8.04 -52.49 -0.42 1.57 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -32.08 371.92 -10.17 -42.25 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.73 Total: 9.35 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -5.47 Total: -18.59 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.37 Total: -44.09 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.06 Total: -10.36 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.08 -10.17 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492185879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.259 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds