Wall clock time and date at job start Tue Mar 31 2020 13:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99820 * 2 1 4 4 H 1.48495 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47187 * 300.00070 * 3 2 1 6 6 H 1.48504 * 109.46971 * 59.99831 * 3 2 1 7 7 C 1.37873 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99977 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47069 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47092 * 304.99824 * 10 9 7 12 12 N 1.46500 * 109.47094 * 64.99760 * 10 9 7 13 13 C 1.34778 * 119.99947 * 204.99788 * 12 10 9 14 14 O 1.21658 * 120.00095 * 0.02562 * 13 12 10 15 15 C 1.46657 * 119.99657 * 180.02562 * 13 12 10 16 16 C 1.34641 * 119.99672 * 173.24643 * 15 13 12 17 17 C 1.47405 * 119.99873 * 348.71695 * 16 15 13 18 18 C 1.40136 * 120.94989 * 312.17878 * 17 16 15 19 19 C 1.37999 * 118.96589 * 180.25001 * 18 17 16 20 20 N 1.31881 * 120.92608 * 0.02562 * 19 18 17 21 21 C 1.31879 * 122.11436 * 359.97438 * 20 19 18 22 22 C 1.38003 * 120.92734 * 359.97438 * 21 20 19 23 23 C 1.50696 * 109.47048 * 184.99968 * 10 9 7 24 24 C 1.38245 * 119.99869 * 279.72896 * 23 10 9 25 25 C 1.38238 * 119.99765 * 179.81406 * 24 23 10 26 26 C 1.38238 * 119.99837 * 0.38957 * 25 24 23 27 27 C 1.38234 * 120.00064 * 359.85936 * 26 25 24 28 28 C 1.38229 * 120.00098 * 359.95958 * 27 26 25 29 29 H 0.96998 * 119.99834 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.47045 * 60.00092 * 9 7 2 31 31 H 1.09000 * 109.47233 * 299.99805 * 9 7 2 32 32 H 0.97006 * 120.00195 * 25.00688 * 12 10 9 33 33 H 1.07996 * 120.00252 * 353.23442 * 15 13 12 34 34 H 1.07997 * 119.99863 * 168.72265 * 16 15 13 35 35 H 1.07996 * 120.51745 * 0.27913 * 18 17 16 36 36 H 1.07998 * 119.53722 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.53845 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.52300 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.99887 * 359.97438 * 24 23 10 40 40 H 1.08005 * 119.99785 * 180.23150 * 25 24 23 41 41 H 1.08006 * 119.99569 * 179.84188 * 26 25 24 42 42 H 1.08000 * 119.99672 * 179.97438 * 27 26 25 43 43 H 1.07997 * 119.99901 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 1 2.9302 -3.5555 -0.8395 12 7 3.0055 -3.6532 1.2542 13 6 4.2302 -4.2138 1.3031 14 8 4.7047 -4.7267 0.3072 15 6 4.9908 -4.2055 2.5570 16 6 6.1518 -4.8816 2.6446 17 6 6.5369 -5.8258 1.5801 18 6 5.6276 -6.7757 1.0957 19 6 6.0332 -7.6431 0.1020 20 7 7.2556 -7.5865 -0.3897 21 6 8.1429 -6.7089 0.0367 22 6 7.8243 -5.8022 1.0270 23 6 1.4962 -4.9637 -0.1220 24 6 0.8985 -5.5257 0.9907 25 6 0.2079 -6.7177 0.8763 26 6 0.1220 -7.3519 -0.3490 27 6 0.7240 -6.7925 -1.4606 28 6 1.4114 -5.5986 -1.3470 29 1 -0.4850 0.8400 -0.0004 30 1 0.6249 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.6273 -3.2440 2.0483 33 1 4.6198 -3.6569 3.4101 34 1 6.8009 -4.7323 3.4947 35 1 4.6250 -6.8279 1.4936 36 1 5.3399 -8.3786 -0.2784 37 1 9.1327 -6.6997 -0.3952 38 1 8.5559 -5.0860 1.3710 39 1 0.9688 -5.0321 1.9487 40 1 -0.2622 -7.1549 1.7448 41 1 -0.4154 -8.2845 -0.4378 42 1 0.6572 -7.2882 -2.4178 43 1 1.8814 -5.1613 -2.2154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492185879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:24 Heat of formation + Delta-G solvation = 25.234799 kcal Electronic energy + Delta-G solvation = -26425.759987 eV Core-core repulsion = 22821.361487 eV Total energy + Delta-G solvation = -3604.398500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37220 -40.62865 -39.63668 -36.93226 -35.30945 -34.70377 -32.78926 -32.06652 -31.73115 -31.28664 -30.50999 -26.99104 -25.40751 -24.23542 -23.81114 -23.47102 -22.95736 -21.26682 -20.51733 -18.77799 -18.48855 -17.71172 -17.25259 -17.06093 -16.77479 -16.54143 -16.18640 -16.15126 -15.45558 -15.27301 -15.16385 -14.59320 -14.49948 -14.42630 -14.28692 -14.18233 -14.03819 -13.67414 -13.41235 -13.23422 -12.93961 -12.63649 -12.61179 -12.48957 -12.13867 -11.88272 -11.60251 -11.44622 -11.30836 -10.76796 -10.59181 -10.39288 -10.10063 -9.80025 -9.73796 -9.59155 -9.49654 -8.21906 -6.32149 -0.22483 0.34906 0.51397 0.55728 0.90253 1.36995 1.39981 1.51155 2.37508 2.39231 2.48101 2.98236 2.99312 3.12683 3.60963 3.67856 3.90416 4.00376 4.03192 4.08651 4.20558 4.21740 4.31992 4.33976 4.45552 4.52931 4.65418 4.75558 4.77697 4.79031 4.91722 4.93768 5.09970 5.12723 5.19706 5.28394 5.30876 5.42022 5.51022 5.61261 5.61963 5.64503 5.76697 5.86332 5.92933 6.15007 6.19718 6.77710 6.80838 7.12004 7.36887 7.42677 8.89033 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.004631 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.714666 B = 6044.173324 C = 8056.718568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.037 3.963 10 C 0.203 3.797 11 H 0.052 0.948 12 N -0.691 5.691 13 C 0.525 3.475 14 O -0.572 6.572 15 C -0.194 4.194 16 C -0.032 4.032 17 C -0.025 4.025 18 C -0.109 4.109 19 C 0.071 3.929 20 N -0.512 5.512 21 C 0.076 3.924 22 C -0.161 4.161 23 C -0.094 4.094 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.133 4.133 29 H 0.264 0.736 30 H 0.000 1.000 31 H 0.013 0.987 32 H 0.408 0.592 33 H 0.169 0.831 34 H 0.185 0.815 35 H 0.117 0.883 36 H 0.155 0.845 37 H 0.177 0.823 38 H 0.162 0.838 39 H 0.122 0.878 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.055 -13.767 8.285 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.000 4.000 10 C 0.098 3.902 11 H 0.071 0.929 12 N -0.340 5.340 13 C 0.315 3.685 14 O -0.454 6.454 15 C -0.215 4.215 16 C -0.051 4.051 17 C -0.034 4.034 18 C -0.129 4.129 19 C -0.084 4.084 20 N -0.222 5.222 21 C -0.081 4.081 22 C -0.181 4.181 23 C -0.095 4.095 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.018 0.982 31 H 0.031 0.969 32 H 0.244 0.756 33 H 0.186 0.814 34 H 0.202 0.798 35 H 0.135 0.865 36 H 0.172 0.828 37 H 0.194 0.806 38 H 0.179 0.821 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.158 0.842 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.438 -14.580 6.921 18.696 hybrid contribution -0.556 2.127 0.401 2.235 sum 8.882 -12.453 7.321 16.957 Atomic orbital electron populations 1.70078 1.07477 1.27680 1.51374 1.25773 0.95553 1.02656 0.94763 0.85528 0.78878 0.79568 0.77824 1.19370 1.20940 1.19884 1.21401 0.92897 0.91587 1.50643 0.92972 1.19136 0.93335 0.91291 0.96269 1.19624 0.92034 0.91850 0.86689 0.92949 1.45851 1.17036 1.57720 1.13362 1.19171 0.81245 0.77915 0.90200 1.90831 1.69570 1.46655 1.38341 1.23296 0.96435 1.04715 0.97018 1.22688 0.94569 0.90915 0.96936 1.19597 0.93731 0.94390 0.95662 1.22032 0.98576 0.95169 0.97093 1.22634 0.93091 0.98561 0.94098 1.67494 1.03462 1.23837 1.27446 1.23036 0.99443 0.91235 0.94395 1.22507 0.96522 1.00635 0.98432 1.20402 0.98340 0.96133 0.94608 1.21057 0.98054 0.96619 0.97998 1.21435 0.98767 0.95000 0.98856 1.21447 0.99890 1.00899 0.92384 1.21345 0.97568 0.95124 1.00072 1.21120 1.00531 0.96645 0.96913 0.92715 0.98212 0.96862 0.75623 0.81376 0.79821 0.86516 0.82817 0.80600 0.82079 0.86006 0.83557 0.83222 0.84221 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.79 13.29 21.45 0.28 -53.51 16 2 C 0.01 0.62 5.46 84.65 0.46 1.08 16 3 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.53 -28.45 8.84 25.60 0.23 -28.23 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.04 1.85 4.50 29.85 0.13 1.99 16 10 C 0.20 8.54 2.12 44.25 0.09 8.63 16 11 H 0.05 2.52 7.44 -2.39 -0.02 2.50 16 12 N -0.69 -24.31 4.02 -450.13 -1.81 -26.12 16 13 C 0.52 17.47 6.95 86.44 0.60 18.07 16 14 O -0.57 -22.88 12.13 -4.21 -0.05 -22.94 16 15 C -0.19 -4.41 9.96 23.64 0.24 -4.17 16 16 C -0.03 -0.62 9.84 23.86 0.23 -0.39 16 17 C -0.03 -0.65 4.36 -19.94 -0.09 -0.73 16 18 C -0.11 -3.14 6.90 22.67 0.16 -2.98 16 19 C 0.07 2.11 11.17 84.63 0.95 3.05 16 20 N -0.51 -15.41 10.34 -196.15 -2.03 -17.44 16 21 C 0.08 1.89 11.17 84.63 0.95 2.83 16 22 C -0.16 -3.68 9.90 22.68 0.22 -3.45 16 23 C -0.09 -3.51 4.91 -19.87 -0.10 -3.61 16 24 C -0.12 -3.82 9.33 22.27 0.21 -3.62 16 25 C -0.12 -3.24 10.05 22.27 0.22 -3.02 16 26 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 27 C -0.12 -3.54 10.05 22.27 0.22 -3.32 16 28 C -0.13 -4.78 9.67 22.27 0.22 -4.56 16 29 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.41 12.90 8.58 -92.70 -0.80 12.10 16 33 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.18 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.12 3.42 7.51 -2.91 -0.02 3.40 16 36 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 37 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.12 3.64 7.71 -2.91 -0.02 3.62 16 40 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 41 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 43 H 0.11 3.90 8.04 -2.91 -0.02 3.88 16 Total: -1.00 -72.81 371.92 3.81 -69.00 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.22 Total: 31.27 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 5.17 Total: -25.42 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -3.55 Total: -97.06 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -72.81 3.81 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492185879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.233 kcal (2) G-P(sol) polarization free energy of solvation -72.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds