Wall clock time and date at job start Tue Mar 31 2020 13:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00465 * 2 1 4 4 H 1.48496 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47046 * 299.99958 * 3 2 1 6 6 H 1.48498 * 109.46770 * 59.99565 * 3 2 1 7 7 C 1.37880 * 119.99393 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99644 * 173.55914 * 7 2 1 9 9 C 1.50696 * 120.00515 * 353.55129 * 7 2 1 10 10 C 1.52998 * 115.54823 * 85.40544 * 9 7 2 11 11 N 1.46496 * 109.47106 * 65.14504 * 10 9 7 12 12 C 1.34773 * 120.00179 * 178.27022 * 11 10 9 13 13 O 1.21677 * 120.00285 * 359.97438 * 12 11 10 14 14 C 1.46599 * 120.00092 * 179.97438 * 12 11 10 15 15 C 1.34866 * 120.00085 * 180.02562 * 14 12 11 16 16 C 1.47036 * 119.99941 * 180.02562 * 15 14 12 17 17 C 1.39480 * 121.43748 * 0.02562 * 16 15 14 18 18 C 1.38959 * 119.44134 * 179.97438 * 17 16 15 19 19 N 1.30935 * 122.60857 * 0.02562 * 18 17 16 20 20 C 1.33537 * 122.46531 * 359.95830 * 19 18 17 21 21 C 1.40658 * 121.18523 * 180.02562 * 20 19 18 22 22 C 1.36105 * 119.71256 * 179.97438 * 21 20 19 23 23 C 1.39305 * 121.09801 * 0.03301 * 22 21 20 24 24 C 1.36354 * 120.80095 * 359.97438 * 23 22 21 25 25 C 1.39861 * 119.56726 * 359.97438 * 24 23 22 26 26 C 1.53003 * 117.50126 * 231.07932 * 9 7 2 27 27 C 1.53008 * 117.49830 * 299.74028 * 9 7 2 28 28 H 0.97002 * 119.99810 * 5.06247 * 1 2 3 29 29 H 1.08994 * 109.47527 * 305.14559 * 10 9 7 30 30 H 1.09005 * 109.46921 * 185.14098 * 10 9 7 31 31 H 0.97006 * 120.00064 * 358.26917 * 11 10 9 32 32 H 1.07997 * 120.00167 * 0.02562 * 14 12 11 33 33 H 1.07997 * 119.99748 * 0.02562 * 15 14 12 34 34 H 1.08007 * 120.28050 * 0.02562 * 17 16 15 35 35 H 1.08001 * 118.69657 * 179.97438 * 18 17 16 36 36 H 1.08001 * 120.14618 * 359.97438 * 21 20 19 37 37 H 1.08000 * 119.45448 * 180.02562 * 22 21 20 38 38 H 1.08000 * 119.60014 * 180.25700 * 23 22 21 39 39 H 1.07994 * 120.22111 * 180.02562 * 24 23 22 40 40 H 1.09000 * 117.49921 * 215.00384 * 26 9 7 41 41 H 1.08994 * 117.49625 * 0.02562 * 26 9 7 42 42 H 1.08995 * 117.49813 * 359.97154 * 27 9 7 43 43 H 1.08994 * 117.49537 * 144.97556 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0794 -1.1972 -0.1044 9 6 1.2581 -2.4950 0.1477 10 6 0.7020 -3.0870 -1.1489 11 7 1.8110 -3.4602 -2.0304 12 6 1.5598 -4.0377 -3.2219 13 8 0.4119 -4.2496 -3.5654 14 6 2.6696 -4.4106 -4.1042 15 6 2.4182 -4.9881 -5.2968 16 6 3.5313 -5.3626 -6.1815 17 6 4.8583 -5.1350 -5.8172 18 6 5.8781 -5.5061 -6.6852 19 7 5.6478 -6.0669 -7.8457 20 6 4.4134 -6.3262 -8.2841 21 6 4.1970 -6.9304 -9.5358 22 6 2.9260 -7.1816 -9.9528 23 6 1.8297 -6.8497 -9.1600 24 6 2.0016 -6.2629 -7.9413 25 6 3.2945 -5.9918 -7.4820 26 6 1.7469 -3.4728 1.2181 27 6 0.4416 -2.7004 1.4253 28 1 -0.4850 0.8368 -0.0741 29 1 0.0754 -2.3471 -1.6468 30 1 0.1074 -3.9712 -0.9189 31 1 2.7262 -3.2916 -1.7564 32 1 3.6884 -4.2230 -3.7992 33 1 1.3993 -5.1754 -5.6019 34 1 5.0914 -4.6751 -4.8682 35 1 6.9012 -5.3239 -6.3912 36 1 5.0357 -7.1937 -10.1632 37 1 2.7647 -7.6460 -10.9145 38 1 0.8317 -7.0638 -9.5130 39 1 1.1450 -6.0098 -7.3342 40 1 1.6724 -4.5379 0.9986 41 1 2.6081 -3.1750 1.8162 42 1 0.4447 -1.8949 2.1595 43 1 -0.4918 -3.2571 1.3419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493285385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:57 Heat of formation + Delta-G solvation = 54.850263 kcal Electronic energy + Delta-G solvation = -24916.857996 eV Core-core repulsion = 21313.743719 eV Total energy + Delta-G solvation = -3603.114277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86321 -39.19165 -37.34584 -36.79280 -35.17899 -33.37605 -32.03188 -31.71645 -30.81670 -29.77360 -26.84856 -25.53276 -24.62292 -23.91110 -22.98120 -21.29776 -20.73987 -19.69483 -19.18023 -18.29275 -17.80970 -16.87655 -16.51354 -15.98106 -15.18351 -14.84473 -14.76982 -14.61464 -14.51477 -14.43101 -14.26303 -13.96256 -13.61093 -13.46534 -13.00041 -12.71116 -12.19805 -12.08138 -11.92835 -11.73871 -11.65421 -11.40692 -11.35155 -11.06612 -10.97088 -10.56856 -10.32724 -9.77438 -9.74365 -9.51686 -9.49224 -9.05388 -9.02882 -8.56138 -8.40136 -8.25108 -8.09744 -6.13576 -4.22656 -0.19859 0.58867 1.13428 2.12847 2.72002 3.21205 3.30651 3.32194 3.61935 3.68405 3.91736 4.02300 4.25987 4.30947 4.39364 4.44604 4.59369 4.81341 4.90153 4.99362 5.08760 5.14679 5.20630 5.27768 5.35301 5.52103 5.55078 5.72201 5.79985 5.94197 5.97869 6.10902 6.20048 6.26487 6.27767 6.33707 6.41020 6.49324 6.57013 6.63784 6.81041 7.03943 7.17743 7.36430 7.42355 7.70021 7.75963 8.17833 8.27514 8.73307 8.79203 9.44775 10.94279 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.002394 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.782545 B =11694.932817 C =12128.087931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.026 3.974 10 C 0.161 3.839 11 N -0.691 5.691 12 C 0.529 3.471 13 O -0.557 6.557 14 C -0.157 4.157 15 C -0.061 4.061 16 C 0.005 3.995 17 C -0.170 4.170 18 C 0.141 3.859 19 N -0.482 5.482 20 C 0.127 3.873 21 C -0.095 4.095 22 C -0.103 4.103 23 C -0.117 4.117 24 C -0.093 4.093 25 C -0.092 4.092 26 C -0.210 4.210 27 C -0.148 4.148 28 H 0.262 0.738 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.402 0.598 32 H 0.131 0.869 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 -12.667 -14.864 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.026 3.974 10 C 0.038 3.962 11 N -0.339 5.339 12 C 0.316 3.684 13 O -0.438 6.438 14 C -0.179 4.179 15 C -0.081 4.081 16 C -0.003 4.003 17 C -0.190 4.190 18 C -0.032 4.032 19 N -0.190 5.190 20 C 0.007 3.993 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.135 4.135 24 C -0.112 4.112 25 C -0.094 4.094 26 C -0.248 4.248 27 C -0.186 4.186 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.236 0.764 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.178 0.822 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.807 -12.938 -15.630 21.740 hybrid contribution 0.156 1.389 0.795 1.608 sum 7.964 -11.549 -14.834 20.417 Atomic orbital electron populations 1.69984 1.05922 1.26917 1.48142 1.25000 0.94814 0.99027 0.94233 0.86571 0.80173 0.83775 0.77695 1.19677 1.20997 1.20913 1.20378 0.92877 0.88574 1.52111 0.92086 1.19039 0.98712 0.93995 0.85701 1.21052 0.87248 0.97077 0.90776 1.45916 1.11731 1.58809 1.17404 1.18248 0.88770 0.79130 0.82217 1.90777 1.22350 1.56029 1.74635 1.23339 0.99646 0.99660 0.95220 1.22060 0.98112 0.95413 0.92530 1.20452 0.93420 0.94265 0.92179 1.22525 0.92397 1.02122 1.01911 1.22747 0.99788 0.92018 0.88654 1.67618 1.22803 1.12859 1.15763 1.18782 0.87825 0.97865 0.94851 1.20813 0.97698 0.98584 0.94240 1.20922 0.92209 0.99110 1.00002 1.20998 0.99383 0.98704 0.94413 1.20988 0.95900 0.97820 0.96476 1.19796 0.94816 1.00500 0.94253 1.23032 0.98720 0.95646 1.07367 1.22499 0.92295 1.01090 1.02698 0.92829 0.90727 0.94238 0.76366 0.85116 0.84129 0.83710 0.82227 0.84724 0.85274 0.85294 0.84770 0.91620 0.90295 0.89769 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.86 12.91 55.43 0.72 -23.14 16 2 C 0.07 1.91 5.39 -17.82 -0.10 1.82 16 3 Si 0.89 20.17 29.55 -169.99 -5.02 15.15 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.50 -12.54 8.63 -34.44 -0.30 -12.84 16 8 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 9 C 0.03 0.60 1.38 -155.66 -0.21 0.38 16 10 C 0.16 3.55 5.50 -4.04 -0.02 3.53 16 11 N -0.69 -12.79 5.47 -61.65 -0.34 -13.13 16 12 C 0.53 9.45 7.75 -12.89 -0.10 9.35 16 13 O -0.56 -11.90 16.24 5.21 0.08 -11.82 16 14 C -0.16 -2.07 9.45 -37.41 -0.35 -2.43 16 15 C -0.06 -0.77 9.15 -37.21 -0.34 -1.11 16 16 C 0.00 0.06 6.07 -102.59 -0.62 -0.57 16 17 C -0.17 -1.68 9.50 -38.85 -0.37 -2.05 16 18 C 0.14 1.38 11.09 -17.67 -0.20 1.18 16 19 N -0.48 -5.74 10.26 -11.12 -0.11 -5.86 16 20 C 0.13 1.51 6.62 -84.90 -0.56 0.95 16 21 C -0.09 -0.92 9.99 -39.44 -0.39 -1.31 16 22 C -0.10 -0.83 9.94 -39.95 -0.40 -1.22 16 23 C -0.12 -0.99 9.97 -39.86 -0.40 -1.39 16 24 C -0.09 -0.96 9.48 -39.65 -0.38 -1.34 16 25 C -0.09 -1.08 5.90 -104.69 -0.62 -1.70 16 26 C -0.21 -4.22 9.96 -26.69 -0.27 -4.49 16 27 C -0.15 -3.29 9.42 -26.69 -0.25 -3.54 16 28 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 29 H 0.07 1.90 8.14 -51.93 -0.42 1.47 16 30 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 31 H 0.40 6.64 8.35 -40.82 -0.34 6.30 16 32 H 0.13 1.32 6.20 -52.49 -0.33 0.99 16 33 H 0.14 1.82 6.08 -52.49 -0.32 1.50 16 34 H 0.15 1.09 6.32 -52.48 -0.33 0.76 16 35 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 1.26 6.54 -52.49 -0.34 0.91 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -31.02 371.57 -10.38 -41.40 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.43 Total: 8.58 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -5.87 Total: -16.77 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.26 Total: -42.13 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.02 -10.38 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493285385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.252 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds