Wall clock time and date at job start Tue Mar 31 2020 13:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00424 * 2 1 4 4 H 1.48505 * 109.47297 * 240.00161 * 3 2 1 5 5 H 1.48500 * 109.46976 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47510 * 119.99963 * 3 2 1 7 7 C 1.37883 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99956 * 173.55898 * 7 2 1 9 9 C 1.50694 * 119.99835 * 353.55366 * 7 2 1 10 10 C 1.53001 * 115.54919 * 85.41148 * 9 7 2 11 11 N 1.46493 * 109.47499 * 65.13806 * 10 9 7 12 12 C 1.34781 * 120.00337 * 178.27949 * 11 10 9 13 13 O 1.21649 * 119.99551 * 359.97438 * 12 11 10 14 14 C 1.46758 * 119.99893 * 180.02562 * 12 11 10 15 15 C 1.34617 * 119.99483 * 180.02562 * 14 12 11 16 16 C 1.47404 * 119.99747 * 179.97438 * 15 14 12 17 17 C 1.40642 * 119.28085 * 179.97438 * 16 15 14 18 18 C 1.36316 * 119.80220 * 179.97438 * 17 16 15 19 19 C 1.40893 * 118.30084 * 0.02562 * 18 17 16 20 20 C 1.40358 * 121.21958 * 180.27615 * 19 18 17 21 21 C 1.36176 * 119.65910 * 180.27556 * 20 19 18 22 22 C 1.39400 * 120.90514 * 359.44263 * 21 20 19 23 23 C 1.36034 * 121.06114 * 0.28596 * 22 21 20 24 24 C 1.40792 * 119.74529 * 359.97438 * 23 22 21 25 25 N 1.32147 * 119.27903 * 359.97438 * 16 15 14 26 26 C 1.53001 * 117.50032 * 231.07581 * 9 7 2 27 27 C 1.52998 * 117.50477 * 299.73673 * 9 7 2 28 28 H 0.97001 * 119.99778 * 5.06860 * 1 2 3 29 29 H 1.09008 * 109.47018 * 305.13896 * 10 9 7 30 30 H 1.08999 * 109.47139 * 185.14212 * 10 9 7 31 31 H 0.96999 * 119.99859 * 358.28302 * 11 10 9 32 32 H 1.07999 * 120.00225 * 359.97438 * 14 12 11 33 33 H 1.08001 * 120.00755 * 359.97438 * 15 14 12 34 34 H 1.08007 * 120.09986 * 359.97438 * 17 16 15 35 35 H 1.08002 * 120.84974 * 180.02562 * 18 17 16 36 36 H 1.08001 * 120.17063 * 0.02562 * 20 19 18 37 37 H 1.07998 * 119.54874 * 179.70953 * 21 20 19 38 38 H 1.07994 * 119.46687 * 180.26325 * 22 21 20 39 39 H 1.08004 * 120.12297 * 180.02562 * 23 22 21 40 40 H 1.08998 * 117.50035 * 215.00251 * 26 9 7 41 41 H 1.08997 * 117.50062 * 0.02562 * 26 9 7 42 42 H 1.09002 * 117.49370 * 359.97438 * 27 9 7 43 43 H 1.08998 * 117.50353 * 144.96739 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1971 -0.1044 9 6 1.2581 -2.4949 0.1476 10 6 0.7021 -3.0870 -1.1490 11 7 1.8111 -3.4601 -2.0304 12 6 1.5600 -4.0375 -3.2221 13 8 0.4123 -4.2493 -3.5655 14 6 2.6711 -4.4118 -4.1048 15 6 2.4202 -4.9881 -5.2953 16 6 3.5361 -5.3635 -6.1821 17 6 3.2567 -5.9651 -7.4223 18 6 4.2805 -6.3161 -8.2510 19 6 5.5999 -6.0600 -7.8282 20 6 6.6996 -6.3911 -8.6351 21 6 7.9616 -6.1345 -8.1926 22 6 8.1776 -5.5361 -6.9522 23 6 7.1359 -5.1965 -6.1459 24 6 5.8161 -5.4504 -6.5654 25 7 4.7772 -5.1274 -5.7946 26 6 1.7469 -3.4728 1.2181 27 6 0.4416 -2.7005 1.4251 28 1 -0.4850 0.8368 -0.0742 29 1 0.0754 -2.3470 -1.6469 30 1 0.1075 -3.9711 -0.9191 31 1 2.7262 -3.2917 -1.7564 32 1 3.6900 -4.2242 -3.7997 33 1 1.4013 -5.1753 -5.6006 34 1 2.2340 -6.1485 -7.7172 35 1 4.0853 -6.7787 -9.2072 36 1 6.5459 -6.8507 -9.6003 37 1 8.8067 -6.3943 -8.8129 38 1 9.1881 -5.3392 -6.6260 39 1 7.3206 -4.7331 -5.1879 40 1 1.6723 -4.5378 0.9985 41 1 2.6081 -3.1751 1.8162 42 1 0.4447 -1.8950 2.1594 43 1 -0.4919 -3.2570 1.3418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493630005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:03 Heat of formation + Delta-G solvation = 54.656227 kcal Electronic energy + Delta-G solvation = -24792.962816 eV Core-core repulsion = 21189.840125 eV Total energy + Delta-G solvation = -3603.122691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02376 -39.08528 -37.57830 -36.67909 -33.94615 -33.29022 -33.19709 -31.96782 -30.48199 -29.85054 -26.78669 -25.50720 -24.67420 -23.78315 -22.39634 -21.52696 -21.06384 -19.57935 -18.96914 -18.47434 -17.48538 -16.73574 -16.55604 -15.89508 -15.05709 -14.85391 -14.76628 -14.69550 -14.67006 -14.35041 -14.09254 -13.88346 -13.40437 -13.35926 -12.92876 -12.64365 -12.30176 -12.01738 -11.89647 -11.78615 -11.61733 -11.58304 -10.99158 -10.91878 -10.85862 -10.54298 -10.26706 -9.98914 -9.74129 -9.68856 -9.39160 -8.97338 -8.75953 -8.49534 -8.39848 -8.24745 -8.04335 -6.07465 -4.16260 -0.04058 0.40717 1.50678 1.84192 2.81051 3.28166 3.33876 3.35482 3.72536 3.77166 3.96037 3.98715 4.27726 4.36113 4.45561 4.53162 4.59865 4.84489 4.89271 5.05932 5.14647 5.20596 5.29182 5.33385 5.47615 5.52699 5.65939 5.72031 5.81586 6.02204 6.03694 6.12234 6.22816 6.31525 6.34988 6.42895 6.49591 6.56644 6.57401 6.70216 6.88844 7.09614 7.27550 7.43185 7.48789 7.69320 7.81948 8.29204 8.34208 8.83220 8.86624 9.50702 11.00391 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.002454 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.173447 B =11405.890230 C =12204.366746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.027 3.973 10 C 0.161 3.839 11 N -0.692 5.692 12 C 0.528 3.472 13 O -0.558 6.558 14 C -0.131 4.131 15 C -0.071 4.071 16 C 0.189 3.811 17 C -0.154 4.154 18 C -0.060 4.060 19 C -0.107 4.107 20 C -0.097 4.097 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.090 4.090 24 C 0.133 3.867 25 N -0.466 5.466 26 C -0.210 4.210 27 C -0.148 4.148 28 H 0.262 0.738 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.403 0.597 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.116 -13.276 -16.597 24.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.038 3.962 11 N -0.339 5.339 12 C 0.315 3.685 13 O -0.440 6.440 14 C -0.155 4.155 15 C -0.091 4.091 16 C 0.039 3.961 17 C -0.174 4.174 18 C -0.086 4.086 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.137 4.137 22 C -0.124 4.124 23 C -0.109 4.109 24 C 0.010 3.990 25 N -0.175 5.175 26 C -0.248 4.248 27 C -0.186 4.186 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.237 0.763 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.390 -12.876 -15.933 23.940 hybrid contribution 0.704 0.707 -0.675 1.205 sum 13.094 -12.168 -16.607 24.399 Atomic orbital electron populations 1.69962 1.05909 1.27076 1.48106 1.24987 0.94808 0.98968 0.94250 0.86686 0.79670 0.83132 0.78680 1.20189 1.21285 1.20175 1.20316 0.92856 0.88624 1.52190 0.92166 1.19023 0.98647 0.93953 0.85719 1.21042 0.87308 0.97033 0.90779 1.45925 1.11723 1.58802 1.17423 1.18413 0.88843 0.79032 0.82244 1.90755 1.22438 1.56101 1.74676 1.23415 0.99904 0.97405 0.94756 1.22105 0.96669 0.97268 0.93070 1.20247 0.90824 0.92918 0.92082 1.21918 1.00988 0.99973 0.94544 1.21406 0.91229 0.96510 0.99446 1.18934 0.94622 1.01382 0.95927 1.20968 0.91912 0.99544 0.99171 1.20947 0.97176 0.99119 0.96459 1.20922 0.99321 0.97943 0.94178 1.20915 0.89899 0.99504 1.00569 1.18886 0.93251 0.96379 0.90437 1.68070 0.98498 1.17523 1.33374 1.23027 0.98675 0.95675 1.07392 1.22494 0.92286 1.01087 1.02740 0.92764 0.90765 0.94274 0.76294 0.84332 0.83656 0.83926 0.84172 0.85340 0.85593 0.85244 0.84457 0.91610 0.90323 0.89805 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.38 12.91 55.43 0.72 -23.67 16 2 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 3 Si 0.89 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.50 -12.98 8.63 -34.44 -0.30 -13.28 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.03 0.64 1.38 -155.66 -0.21 0.43 16 10 C 0.16 3.69 5.50 -4.04 -0.02 3.67 16 11 N -0.69 -13.71 5.47 -61.60 -0.34 -14.05 16 12 C 0.53 10.12 7.75 -12.82 -0.10 10.02 16 13 O -0.56 -12.42 16.24 5.23 0.08 -12.34 16 14 C -0.13 -2.02 9.55 -37.42 -0.36 -2.38 16 15 C -0.07 -0.97 9.43 -37.13 -0.35 -1.32 16 16 C 0.19 2.40 6.71 -83.09 -0.56 1.84 16 17 C -0.15 -1.52 9.73 -39.37 -0.38 -1.91 16 18 C -0.06 -0.53 9.88 -39.27 -0.39 -0.92 16 19 C -0.11 -1.09 5.75 -106.70 -0.61 -1.70 16 20 C -0.10 -0.75 9.76 -39.53 -0.39 -1.14 16 21 C -0.12 -0.84 9.96 -39.89 -0.40 -1.24 16 22 C -0.10 -0.81 9.94 -39.94 -0.40 -1.21 16 23 C -0.09 -0.92 9.99 -39.41 -0.39 -1.32 16 24 C 0.13 1.63 6.61 -84.85 -0.56 1.06 16 25 N -0.47 -6.38 9.25 -7.66 -0.07 -6.45 16 26 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 27 C -0.15 -3.39 9.42 -26.70 -0.25 -3.64 16 28 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 29 H 0.07 1.94 8.14 -51.92 -0.42 1.52 16 30 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 31 H 0.40 7.32 8.35 -40.82 -0.34 6.98 16 32 H 0.14 1.98 7.39 -52.49 -0.39 1.59 16 33 H 0.15 1.90 7.52 -52.49 -0.39 1.51 16 34 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -31.44 376.59 -10.72 -42.16 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.74 Total: 8.76 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -6.03 Total: -15.78 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.31 Total: -44.16 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.44 -10.72 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493630005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.820 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds