Wall clock time and date at job start Tue Mar 31 2020 13:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00424 * 2 1 4 4 H 1.48505 * 109.47297 * 240.00161 * 3 2 1 5 5 H 1.48500 * 109.46976 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47510 * 119.99963 * 3 2 1 7 7 C 1.37883 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99956 * 173.55898 * 7 2 1 9 9 C 1.50694 * 119.99835 * 353.55366 * 7 2 1 10 10 C 1.53001 * 115.54919 * 85.41148 * 9 7 2 11 11 N 1.46493 * 109.47499 * 65.13806 * 10 9 7 12 12 C 1.34781 * 120.00337 * 178.27949 * 11 10 9 13 13 O 1.21649 * 119.99551 * 359.97438 * 12 11 10 14 14 C 1.46758 * 119.99893 * 180.02562 * 12 11 10 15 15 C 1.34617 * 119.99483 * 180.02562 * 14 12 11 16 16 C 1.47404 * 119.99747 * 179.97438 * 15 14 12 17 17 C 1.40642 * 119.28085 * 179.97438 * 16 15 14 18 18 C 1.36316 * 119.80220 * 179.97438 * 17 16 15 19 19 C 1.40893 * 118.30084 * 0.02562 * 18 17 16 20 20 C 1.40358 * 121.21958 * 180.27615 * 19 18 17 21 21 C 1.36176 * 119.65910 * 180.27556 * 20 19 18 22 22 C 1.39400 * 120.90514 * 359.44263 * 21 20 19 23 23 C 1.36034 * 121.06114 * 0.28596 * 22 21 20 24 24 C 1.40792 * 119.74529 * 359.97438 * 23 22 21 25 25 N 1.32147 * 119.27903 * 359.97438 * 16 15 14 26 26 C 1.53001 * 117.50032 * 231.07581 * 9 7 2 27 27 C 1.52998 * 117.50477 * 299.73673 * 9 7 2 28 28 H 0.97001 * 119.99778 * 5.06860 * 1 2 3 29 29 H 1.09008 * 109.47018 * 305.13896 * 10 9 7 30 30 H 1.08999 * 109.47139 * 185.14212 * 10 9 7 31 31 H 0.96999 * 119.99859 * 358.28302 * 11 10 9 32 32 H 1.07999 * 120.00225 * 359.97438 * 14 12 11 33 33 H 1.08001 * 120.00755 * 359.97438 * 15 14 12 34 34 H 1.08007 * 120.09986 * 359.97438 * 17 16 15 35 35 H 1.08002 * 120.84974 * 180.02562 * 18 17 16 36 36 H 1.08001 * 120.17063 * 0.02562 * 20 19 18 37 37 H 1.07998 * 119.54874 * 179.70953 * 21 20 19 38 38 H 1.07994 * 119.46687 * 180.26325 * 22 21 20 39 39 H 1.08004 * 120.12297 * 180.02562 * 23 22 21 40 40 H 1.08998 * 117.50035 * 215.00251 * 26 9 7 41 41 H 1.08997 * 117.50062 * 0.02562 * 26 9 7 42 42 H 1.09002 * 117.49370 * 359.97438 * 27 9 7 43 43 H 1.08998 * 117.50353 * 144.96739 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0793 -1.1971 -0.1044 9 6 1.2581 -2.4949 0.1476 10 6 0.7021 -3.0870 -1.1490 11 7 1.8111 -3.4601 -2.0304 12 6 1.5600 -4.0375 -3.2221 13 8 0.4123 -4.2493 -3.5655 14 6 2.6711 -4.4118 -4.1048 15 6 2.4202 -4.9881 -5.2953 16 6 3.5361 -5.3635 -6.1821 17 6 3.2567 -5.9651 -7.4223 18 6 4.2805 -6.3161 -8.2510 19 6 5.5999 -6.0600 -7.8282 20 6 6.6996 -6.3911 -8.6351 21 6 7.9616 -6.1345 -8.1926 22 6 8.1776 -5.5361 -6.9522 23 6 7.1359 -5.1965 -6.1459 24 6 5.8161 -5.4504 -6.5654 25 7 4.7772 -5.1274 -5.7946 26 6 1.7469 -3.4728 1.2181 27 6 0.4416 -2.7005 1.4251 28 1 -0.4850 0.8368 -0.0742 29 1 0.0754 -2.3470 -1.6469 30 1 0.1075 -3.9711 -0.9191 31 1 2.7262 -3.2917 -1.7564 32 1 3.6900 -4.2242 -3.7997 33 1 1.4013 -5.1753 -5.6006 34 1 2.2340 -6.1485 -7.7172 35 1 4.0853 -6.7787 -9.2072 36 1 6.5459 -6.8507 -9.6003 37 1 8.8067 -6.3943 -8.8129 38 1 9.1881 -5.3392 -6.6260 39 1 7.3206 -4.7331 -5.1879 40 1 1.6723 -4.5378 0.9985 41 1 2.6081 -3.1751 1.8162 42 1 0.4447 -1.8950 2.1594 43 1 -0.4919 -3.2570 1.3418 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493630005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:02 Heat of formation + Delta-G solvation = 37.111040 kcal Electronic energy + Delta-G solvation = -24793.723633 eV Core-core repulsion = 21189.840125 eV Total energy + Delta-G solvation = -3603.883507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76983 -40.65487 -38.58066 -38.22410 -34.96723 -34.75939 -34.17422 -33.97430 -31.21839 -30.68583 -28.39763 -27.35021 -25.80809 -24.56146 -23.09726 -23.01862 -22.51320 -21.34906 -20.44781 -19.29165 -18.40611 -18.03383 -17.88108 -17.18578 -16.67213 -16.46426 -16.11333 -15.72894 -15.49951 -15.42201 -15.37060 -14.95950 -14.76720 -14.42776 -13.99499 -13.94015 -13.69404 -13.48689 -13.12616 -13.01836 -12.94022 -12.80402 -12.51342 -12.39520 -12.30533 -12.05050 -11.56796 -11.51123 -11.06588 -10.99322 -10.87337 -10.54955 -10.46592 -10.08471 -9.87409 -9.47693 -9.12508 -8.10839 -6.24124 -0.87929 -0.31165 0.52438 1.09587 1.42911 1.43583 1.50477 1.98798 2.31779 2.42146 2.43454 3.05650 3.16498 3.17119 3.46348 3.60793 3.68136 3.89111 3.92872 4.07996 4.19773 4.23514 4.28099 4.33099 4.47409 4.54193 4.54681 4.64277 4.71532 4.82840 4.94299 4.98418 5.01125 5.06125 5.12224 5.23860 5.26626 5.28624 5.43951 5.50213 5.55675 5.59303 5.59453 5.66893 5.76935 5.92966 6.35793 6.71972 6.83272 6.86504 7.30398 7.45389 8.96590 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.002454 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.173447 B =11405.890230 C =12204.366746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.004 3.996 10 C 0.177 3.823 11 N -0.691 5.691 12 C 0.531 3.469 13 O -0.595 6.595 14 C -0.158 4.158 15 C -0.038 4.038 16 C 0.159 3.841 17 C -0.161 4.161 18 C -0.051 4.051 19 C -0.119 4.119 20 C -0.098 4.098 21 C -0.116 4.116 22 C -0.095 4.095 23 C -0.119 4.119 24 C 0.100 3.900 25 N -0.492 5.492 26 C -0.177 4.177 27 C -0.158 4.158 28 H 0.259 0.741 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.411 0.589 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.167 0.833 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.835 -14.882 -19.120 28.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.003 3.997 10 C 0.053 3.947 11 N -0.339 5.339 12 C 0.321 3.679 13 O -0.479 6.479 14 C -0.181 4.181 15 C -0.058 4.058 16 C 0.010 3.990 17 C -0.181 4.181 18 C -0.076 4.076 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.134 4.134 22 C -0.114 4.114 23 C -0.138 4.138 24 C -0.023 4.023 25 N -0.202 5.202 26 C -0.214 4.214 27 C -0.196 4.196 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.246 0.754 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.185 0.815 35 H 0.198 0.802 36 H 0.180 0.820 37 H 0.178 0.822 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.148 -14.487 -18.446 27.921 hybrid contribution 0.026 1.095 -0.060 1.097 sum 15.174 -13.393 -18.506 27.424 Atomic orbital electron populations 1.70090 1.07241 1.27448 1.49671 1.25705 0.95486 1.02079 0.94308 0.85747 0.78414 0.79415 0.78850 1.19789 1.21574 1.19409 1.20642 0.93132 0.89685 1.51114 0.91931 1.19048 0.99808 0.94490 0.86322 1.20621 0.87697 0.95727 0.90639 1.45809 1.11314 1.59149 1.17580 1.18921 0.89269 0.77762 0.81989 1.90721 1.24159 1.57677 1.75353 1.23071 0.98665 1.01025 0.95362 1.22328 0.97572 0.93862 0.92086 1.20265 0.90257 0.95056 0.93385 1.22148 1.02752 0.99675 0.93520 1.21869 0.90172 0.95140 1.00448 1.19296 0.96320 1.00977 0.95472 1.21385 0.91312 0.98858 1.00037 1.21407 0.98229 0.97576 0.96150 1.21302 0.99809 0.96247 0.94065 1.21057 0.90183 1.01251 1.01325 1.19276 0.93419 0.97837 0.91733 1.67955 0.99273 1.18231 1.34710 1.23012 0.97449 0.96275 1.04694 1.22440 0.93757 1.01368 1.02020 0.93153 0.94958 0.94227 0.75354 0.83613 0.83181 0.81532 0.80212 0.82031 0.82217 0.82740 0.85090 0.89310 0.89553 0.91714 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.13 12.91 21.45 0.28 -51.85 16 2 C 0.03 1.36 5.39 84.66 0.46 1.81 16 3 Si 0.95 43.06 29.55 68.60 2.03 45.09 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.51 -26.57 8.63 25.60 0.22 -26.34 16 8 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 9 C 0.00 0.19 1.38 -52.93 -0.07 0.12 16 10 C 0.18 8.41 5.50 86.38 0.48 8.88 16 11 N -0.69 -28.26 5.47 -467.04 -2.56 -30.81 16 12 C 0.53 21.13 7.75 86.47 0.67 21.80 16 13 O -0.60 -27.51 16.24 -4.19 -0.07 -27.57 16 14 C -0.16 -5.03 9.55 23.67 0.23 -4.80 16 15 C -0.04 -1.06 9.43 23.86 0.22 -0.83 16 16 C 0.16 4.03 6.71 42.10 0.28 4.31 16 17 C -0.16 -2.90 9.73 22.41 0.22 -2.68 16 18 C -0.05 -0.74 9.88 22.47 0.22 -0.52 16 19 C -0.12 -2.14 5.75 -21.21 -0.12 -2.27 16 20 C -0.10 -1.13 9.76 22.31 0.22 -0.92 16 21 C -0.12 -1.19 9.96 22.07 0.22 -0.97 16 22 C -0.09 -1.25 9.94 22.04 0.22 -1.03 16 23 C -0.12 -2.39 9.99 22.38 0.22 -2.17 16 24 C 0.10 2.40 6.61 40.44 0.27 2.66 16 25 N -0.49 -13.69 9.25 -178.14 -1.65 -15.34 16 26 C -0.18 -7.21 9.96 30.62 0.30 -6.91 16 27 C -0.16 -7.30 9.42 30.62 0.29 -7.01 16 28 H 0.26 14.42 8.32 -92.71 -0.77 13.64 16 29 H 0.03 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.04 1.84 8.09 -2.39 -0.02 1.82 16 31 H 0.41 15.28 8.35 -92.71 -0.77 14.50 16 32 H 0.15 4.37 7.39 -2.91 -0.02 4.35 16 33 H 0.15 3.96 7.52 -2.91 -0.02 3.94 16 34 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 38 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 40 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 41 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.06 3.21 8.14 -2.39 -0.02 3.20 16 43 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -70.96 376.59 2.83 -68.13 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.25 Total: 29.23 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 4.54 Total: -16.87 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -3.93 Total: -98.00 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.07 Total: -27.57 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -70.96 2.83 -68.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493630005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.245 kcal (2) G-P(sol) polarization free energy of solvation -70.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds