Wall clock time and date at job start Tue Mar 31 2020 13:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48503 * 109.47252 * 240.00144 * 3 2 1 5 5 H 1.48497 * 109.47264 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47082 * 120.00433 * 3 2 1 7 7 C 1.37873 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99975 * 184.00225 * 7 2 1 9 9 C 1.50701 * 120.00264 * 4.00166 * 7 2 1 10 10 C 1.53002 * 115.54775 * 91.57359 * 9 7 2 11 11 N 1.46500 * 109.47179 * 62.47991 * 10 9 7 12 12 C 1.34771 * 120.00457 * 175.27189 * 11 10 9 13 13 O 1.21656 * 119.99849 * 359.97438 * 12 11 10 14 14 C 1.46757 * 120.00557 * 179.97438 * 12 11 10 15 15 C 1.34612 * 120.00595 * 185.51977 * 14 12 11 16 16 C 1.47403 * 119.99602 * 7.93846 * 15 14 12 17 17 C 1.40643 * 119.27688 * 240.78737 * 16 15 14 18 18 C 1.36315 * 119.79909 * 179.78344 * 17 16 15 19 19 C 1.40892 * 118.30136 * 0.45667 * 18 17 16 20 20 C 1.40366 * 121.22023 * 179.81204 * 19 18 17 21 21 C 1.36185 * 119.66000 * 179.97438 * 20 19 18 22 22 C 1.39398 * 120.90040 * 359.97438 * 21 20 19 23 23 C 1.36034 * 121.06987 * 0.02763 * 22 21 20 24 24 C 1.40792 * 119.74110 * 359.95120 * 23 22 21 25 25 N 1.32150 * 119.27915 * 61.05766 * 16 15 14 26 26 C 1.52994 * 117.50319 * 237.25113 * 9 7 2 27 27 C 1.53001 * 117.49747 * 305.90979 * 9 7 2 28 28 H 0.97003 * 119.99795 * 5.00854 * 1 2 3 29 29 H 1.08998 * 109.47603 * 302.47892 * 10 9 7 30 30 H 1.09008 * 109.47175 * 182.47812 * 10 9 7 31 31 H 0.97003 * 119.99488 * 355.27011 * 11 10 9 32 32 H 1.08001 * 119.99459 * 5.52785 * 14 12 11 33 33 H 1.07997 * 120.00488 * 187.92943 * 15 14 12 34 34 H 1.07998 * 120.09451 * 0.02562 * 17 16 15 35 35 H 1.07996 * 120.85156 * 180.26466 * 18 17 16 36 36 H 1.08000 * 120.17155 * 359.95336 * 20 19 18 37 37 H 1.07993 * 119.54840 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.46620 * 179.97438 * 22 21 20 39 39 H 1.07992 * 120.12784 * 179.97438 * 23 22 21 40 40 H 1.09000 * 117.50144 * 215.00440 * 26 9 7 41 41 H 1.09003 * 117.49503 * 0.02562 * 26 9 7 42 42 H 1.09000 * 117.50020 * 359.97214 * 27 9 7 43 43 H 1.09007 * 117.49529 * 144.97009 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0825 -1.1952 0.0647 9 6 1.2538 -2.4975 -0.0922 10 6 1.0413 -3.0385 -1.5075 11 7 2.3405 -3.3213 -2.1224 12 6 2.3991 -3.8979 -3.3392 13 8 1.3730 -4.1839 -3.9267 14 6 3.7006 -4.1807 -3.9554 15 6 3.7609 -4.6532 -5.2145 16 6 2.5384 -4.7217 -6.0352 17 6 2.0977 -5.9701 -6.5098 18 6 0.9661 -6.0464 -7.2659 19 6 0.2751 -4.8533 -7.5563 20 6 -0.8944 -4.8604 -8.3326 21 6 -1.5372 -3.6885 -8.5934 22 6 -1.0501 -2.4794 -8.0993 23 6 0.0802 -2.4342 -7.3437 24 6 0.7732 -3.6244 -7.0516 25 7 1.8835 -3.6081 -6.3134 26 6 1.4678 -3.5165 1.0288 27 6 0.1469 -2.7489 0.9338 28 1 -0.4850 0.8369 -0.0733 29 1 0.5107 -2.2966 -2.1043 30 1 0.4537 -3.9555 -1.4616 31 1 3.1587 -3.0935 -1.6538 32 1 4.6102 -4.0098 -3.3987 33 1 4.7049 -4.9819 -5.6233 34 1 2.6521 -6.8661 -6.2725 35 1 0.6100 -6.9965 -7.6356 36 1 -1.2822 -5.7903 -8.7214 37 1 -2.4365 -3.6959 -9.1912 38 1 -1.5781 -1.5637 -8.3207 39 1 0.4442 -1.4890 -6.9690 40 1 1.4574 -4.5723 0.7581 41 1 2.1514 -3.2438 1.8329 42 1 -0.0380 -1.9717 1.6753 43 1 -0.7328 -3.2994 0.6003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493630007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:05 Heat of formation + Delta-G solvation = 46.966153 kcal Electronic energy + Delta-G solvation = -25985.477436 eV Core-core repulsion = 22382.021278 eV Total energy + Delta-G solvation = -3603.456158 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.68364 -40.53331 -38.63041 -37.95964 -34.93047 -34.51495 -34.15430 -33.93125 -31.07506 -30.63826 -28.41199 -27.32640 -25.58891 -24.45889 -23.16220 -22.96142 -22.68011 -21.37027 -20.39734 -19.15481 -18.35463 -18.05495 -17.96048 -17.00158 -16.72036 -16.22285 -16.05661 -15.69470 -15.54240 -15.42488 -15.19405 -14.78625 -14.55270 -14.48041 -14.09712 -13.96107 -13.73359 -13.47215 -13.35924 -12.96435 -12.79188 -12.57827 -12.49676 -12.40889 -12.22120 -12.03512 -11.46472 -11.40442 -11.01732 -10.87157 -10.75890 -10.41363 -10.24730 -10.05658 -9.78996 -9.45969 -9.09121 -8.11594 -6.25627 -0.52439 -0.15293 0.42964 1.15724 1.41657 1.43370 1.49494 2.04191 2.38965 2.43450 2.52821 3.16332 3.19214 3.36264 3.50342 3.66376 3.78726 3.99648 4.02137 4.09579 4.23467 4.27318 4.29159 4.45362 4.52003 4.52733 4.61014 4.64629 4.69979 4.88858 4.94412 4.96483 5.00110 5.12008 5.14695 5.22930 5.26762 5.35022 5.44854 5.49651 5.55110 5.62333 5.70287 5.72372 5.76193 5.99910 6.34200 6.80800 6.85499 7.10089 7.43503 7.46135 8.95387 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013248 B = 0.003454 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.044390 B = 8104.770489 C = 8841.402748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.066 0.934 9 C 0.001 3.999 10 C 0.186 3.814 11 N -0.696 5.696 12 C 0.519 3.481 13 O -0.582 6.582 14 C -0.175 4.175 15 C -0.034 4.034 16 C 0.181 3.819 17 C -0.166 4.166 18 C -0.061 4.061 19 C -0.131 4.131 20 C -0.095 4.095 21 C -0.127 4.127 22 C -0.100 4.100 23 C -0.131 4.131 24 C 0.110 3.890 25 N -0.488 5.488 26 C -0.177 4.177 27 C -0.149 4.149 28 H 0.258 0.742 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.410 0.590 32 H 0.176 0.824 33 H 0.197 0.803 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.149 0.851 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 -13.170 -16.362 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.541 4.541 8 H 0.084 0.916 9 C 0.000 4.000 10 C 0.062 3.938 11 N -0.345 5.345 12 C 0.309 3.691 13 O -0.464 6.464 14 C -0.197 4.197 15 C -0.054 4.054 16 C 0.029 3.971 17 C -0.186 4.186 18 C -0.086 4.086 19 C -0.133 4.133 20 C -0.114 4.114 21 C -0.144 4.144 22 C -0.119 4.119 23 C -0.149 4.149 24 C -0.013 4.013 25 N -0.197 5.197 26 C -0.214 4.214 27 C -0.188 4.188 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.246 0.754 32 H 0.194 0.806 33 H 0.214 0.786 34 H 0.186 0.814 35 H 0.192 0.808 36 H 0.180 0.820 37 H 0.178 0.822 38 H 0.167 0.833 39 H 0.131 0.869 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.441 -12.353 -16.400 21.006 hybrid contribution -0.108 0.937 0.387 1.020 sum 4.332 -11.415 -16.013 20.137 Atomic orbital electron populations 1.70138 1.07288 1.27359 1.49899 1.25722 0.95500 1.02181 0.94324 0.85755 0.78435 0.79406 0.78902 1.19907 1.21731 1.19027 1.20647 0.92878 0.89587 1.51029 0.91618 1.19073 1.00230 0.94379 0.86310 1.20445 0.84094 0.95548 0.93755 1.45764 1.09926 1.60292 1.18537 1.19328 0.91118 0.77610 0.81050 1.90762 1.37937 1.54840 1.62855 1.23329 0.96489 1.02142 0.97728 1.22670 0.96654 0.93913 0.92138 1.20570 0.93937 0.89508 0.93051 1.22091 0.98856 0.98461 0.99181 1.21765 0.93501 0.98082 0.95274 1.19252 0.98575 0.94153 1.01298 1.21385 0.93149 1.00323 0.96510 1.21306 1.01091 0.91687 1.00352 1.21212 0.94708 1.00158 0.95851 1.20980 0.97093 0.96672 1.00194 1.19159 0.92855 0.94027 0.95221 1.68022 1.07695 1.31746 1.12281 1.23022 0.99803 0.95958 1.02586 1.22332 0.91359 1.01228 1.03844 0.93322 0.96747 0.94867 0.75361 0.80643 0.78589 0.81421 0.80817 0.82021 0.82178 0.83302 0.86861 0.89531 0.89591 0.91422 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.85 12.11 21.45 0.26 -52.59 16 2 C 0.02 1.26 5.41 84.65 0.46 1.72 16 3 Si 0.95 43.26 29.54 68.60 2.03 45.28 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.50 -26.37 8.51 25.60 0.22 -26.15 16 8 H 0.07 3.27 7.82 -2.91 -0.02 3.25 16 9 C 0.00 0.04 1.62 -52.93 -0.09 -0.05 16 10 C 0.19 8.96 5.51 86.38 0.48 9.43 16 11 N -0.70 -27.92 5.46 -467.03 -2.55 -30.47 16 12 C 0.52 20.08 7.59 86.47 0.66 20.73 16 13 O -0.58 -27.05 13.29 -4.21 -0.06 -27.11 16 14 C -0.18 -4.63 10.07 23.67 0.24 -4.39 16 15 C -0.03 -0.79 9.83 23.85 0.23 -0.55 16 16 C 0.18 5.50 4.39 42.10 0.18 5.68 16 17 C -0.17 -4.00 9.73 22.41 0.22 -3.79 16 18 C -0.06 -1.41 9.88 22.47 0.22 -1.19 16 19 C -0.13 -3.73 5.75 -21.21 -0.12 -3.86 16 20 C -0.10 -2.06 9.77 22.31 0.22 -1.84 16 21 C -0.13 -2.61 9.96 22.07 0.22 -2.39 16 22 C -0.10 -2.51 9.94 22.04 0.22 -2.29 16 23 C -0.13 -4.35 9.99 22.38 0.22 -4.13 16 24 C 0.11 3.92 6.61 40.44 0.27 4.19 16 25 N -0.49 -18.48 8.72 -178.13 -1.55 -20.03 16 26 C -0.18 -7.32 9.96 30.61 0.30 -7.02 16 27 C -0.15 -7.18 8.91 30.62 0.27 -6.90 16 28 H 0.26 14.52 8.32 -92.71 -0.77 13.75 16 29 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.03 1.60 8.10 -2.38 -0.02 1.58 16 31 H 0.41 14.59 8.22 -92.71 -0.76 13.82 16 32 H 0.18 3.12 8.06 -2.91 -0.02 3.09 16 33 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 39 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 40 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.07 3.54 7.80 -2.39 -0.02 3.53 16 43 H 0.06 3.00 8.14 -2.38 -0.02 2.98 16 Total: -1.00 -77.86 371.11 2.81 -75.05 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.26 Total: 32.64 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.42 Total: -22.78 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.84 Total: -103.09 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -77.86 2.81 -75.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493630007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.015 kcal (2) G-P(sol) polarization free energy of solvation -77.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds