Wall clock time and date at job start Tue Mar 31 2020 13:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99803 * 2 1 4 4 H 1.48502 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47334 * 299.99749 * 3 2 1 6 6 H 1.48502 * 109.47572 * 59.99860 * 3 2 1 7 7 C 1.37876 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99715 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47318 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47073 * 180.02562 * 10 9 7 12 12 N 1.46510 * 109.46777 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99599 * 179.97438 * 12 11 10 14 14 O 1.21582 * 120.00469 * 4.96736 * 13 12 11 15 15 N 1.34777 * 119.99637 * 184.95688 * 13 12 11 16 16 C 1.46367 * 119.73834 * 174.77535 * 15 13 12 17 17 C 1.52188 * 111.18204 * 243.95598 * 16 15 13 18 18 O 1.43295 * 110.08896 * 299.03853 * 17 16 15 19 19 C 1.35489 * 115.75107 * 89.02769 * 18 17 16 20 20 C 1.38917 * 120.15341 * 108.65077 * 19 18 17 21 21 C 1.38085 * 119.95867 * 182.15798 * 20 19 18 22 22 C 1.38478 * 120.37905 * 0.12174 * 21 20 19 23 23 F 1.35099 * 120.07790 * 179.08544 * 22 21 20 24 24 C 1.38652 * 119.84698 * 359.05435 * 22 21 20 25 25 C 1.37599 * 119.62898 * 359.94595 * 24 22 21 26 26 C 1.46621 * 119.73884 * 354.75750 * 15 13 12 27 27 H 0.96994 * 120.00177 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46931 * 60.00647 * 9 7 2 29 29 H 1.08992 * 109.47926 * 300.00289 * 9 7 2 30 30 H 1.09000 * 109.46704 * 60.00134 * 10 9 7 31 31 H 1.09002 * 109.47063 * 300.00989 * 10 9 7 32 32 H 1.09003 * 109.47250 * 60.00816 * 11 10 9 33 33 H 1.09002 * 109.47610 * 299.99781 * 11 10 9 34 34 H 0.97001 * 119.99933 * 0.02562 * 12 11 10 35 35 H 1.08990 * 109.13901 * 123.51073 * 16 15 13 36 36 H 1.08998 * 109.13220 * 4.39070 * 16 15 13 37 37 H 1.09007 * 109.36428 * 178.85268 * 17 16 15 38 38 H 1.08994 * 109.37193 * 59.23388 * 17 16 15 39 39 H 1.08006 * 120.01570 * 2.13634 * 20 19 18 40 40 H 1.08001 * 119.81028 * 180.12096 * 21 20 19 41 41 H 1.08003 * 120.18383 * 179.97438 * 24 22 21 42 42 H 1.08995 * 109.57845 * 339.52707 * 26 15 13 43 43 H 1.08996 * 109.70116 * 219.17550 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 7 2.4323 -6.1007 0.0024 13 6 1.9830 -7.3713 0.0034 14 8 0.7913 -7.5948 -0.0872 15 7 2.8547 -8.3941 0.1046 16 6 2.3552 -9.7650 0.2207 17 6 2.7382 -10.3783 1.5598 18 8 4.1645 -10.4267 1.6891 19 6 4.7438 -9.3295 2.2336 20 6 5.2779 -9.3856 3.5147 21 6 5.8274 -8.2533 4.0829 22 6 5.8475 -7.0582 3.3837 23 9 6.3698 -5.9497 3.9525 24 6 5.3309 -7.0020 2.0983 25 6 4.8027 -8.1369 1.5271 26 6 4.2960 -8.1249 0.0972 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6247 -2.5564 0.8918 30 1 2.8726 -3.6040 0.8910 31 1 2.8714 -3.6047 -0.8890 32 1 0.8533 -5.0450 -0.8878 33 1 0.8539 -5.0448 0.8923 34 1 3.3860 -5.9234 0.0026 35 1 2.7776 -10.3685 -0.5827 36 1 1.2692 -9.7585 0.1282 37 1 2.3351 -11.3892 1.6229 38 1 2.3224 -9.7744 2.3662 39 1 5.2632 -10.3142 4.0660 40 1 6.2438 -8.3001 5.0783 41 1 5.3434 -6.0726 1.5482 42 1 4.4827 -7.1479 -0.3484 43 1 4.8105 -8.8937 -0.4792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494881813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:18 Heat of formation + Delta-G solvation = -84.208112 kcal Electronic energy + Delta-G solvation = -27117.651248 eV Core-core repulsion = 23077.737723 eV Total energy + Delta-G solvation = -4039.913525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.11655 -41.19604 -39.64452 -37.72098 -35.94537 -35.41156 -33.38668 -32.35339 -31.42591 -30.72223 -28.83854 -26.87890 -26.54407 -24.03903 -23.06742 -22.47249 -21.93521 -20.67013 -19.84093 -18.66702 -18.01977 -17.57738 -16.93791 -16.65731 -16.23638 -15.90263 -15.83884 -15.42200 -14.91091 -14.76499 -14.53452 -14.32493 -14.30221 -13.92083 -13.84544 -13.59844 -13.33382 -12.89667 -12.39862 -12.20784 -12.14146 -11.90273 -11.79507 -11.69364 -11.41923 -10.92807 -10.74005 -10.58427 -10.51712 -10.18826 -9.88780 -9.51519 -9.44136 -9.12474 -9.11370 -8.75219 -8.64096 -8.38011 -6.02460 -4.05496 0.57864 0.75086 2.48781 2.89526 3.17859 3.29767 3.37380 3.40834 3.48263 3.82628 3.92706 4.18990 4.30803 4.44211 4.62753 4.67246 4.70737 4.78787 4.89422 5.00266 5.02994 5.18074 5.33523 5.39406 5.41796 5.54728 5.64908 5.71106 5.73526 5.77856 5.93394 6.14644 6.20718 6.27989 6.46772 6.58906 6.68764 6.90431 6.99207 7.04181 7.62957 7.75127 7.92803 7.96299 8.37025 8.59582 9.01306 9.58832 11.08871 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.003113 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.429064 B = 8991.335254 C =10670.753144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.133 3.867 12 N -0.739 5.739 13 C 0.704 3.296 14 O -0.586 6.586 15 N -0.630 5.630 16 C 0.097 3.903 17 C 0.048 3.952 18 O -0.323 6.323 19 C 0.100 3.900 20 C -0.106 4.106 21 C -0.137 4.137 22 C 0.095 3.905 23 F -0.134 7.134 24 C -0.122 4.122 25 C -0.112 4.112 26 C 0.155 3.845 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.392 0.608 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.091 0.909 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.232 -23.602 4.781 27.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.010 3.990 12 N -0.394 5.394 13 C 0.406 3.594 14 O -0.464 6.464 15 N -0.368 5.368 16 C -0.026 4.026 17 C -0.028 4.028 18 O -0.239 6.239 19 C 0.055 3.945 20 C -0.125 4.125 21 C -0.156 4.156 22 C 0.076 3.924 23 F -0.112 7.112 24 C -0.141 4.141 25 C -0.114 4.114 26 C 0.032 3.968 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.227 0.773 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.083 0.917 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.109 0.891 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.252 -23.749 4.655 26.688 hybrid contribution 0.978 1.460 0.252 1.775 sum 12.230 -22.288 4.907 25.892 Atomic orbital electron populations 1.69975 1.06053 1.26583 1.50639 1.25028 0.94856 0.99312 0.95278 0.86532 0.80062 0.83767 0.77605 1.19747 1.20997 1.20997 1.21232 0.93017 0.90909 1.50822 0.92600 1.19025 0.93823 0.90778 0.97703 1.21898 0.99842 0.93330 1.00798 1.21561 0.91309 0.84126 1.01993 1.45573 1.10501 1.04476 1.78893 1.15965 0.84886 0.80863 0.77728 1.90909 1.14118 1.83637 1.57730 1.47045 1.04878 1.06244 1.78595 1.21749 1.02503 0.81061 0.97318 1.23288 0.78781 1.02731 0.97961 1.86134 1.21106 1.35860 1.80840 1.18484 0.97909 0.86525 0.91579 1.21126 0.99385 0.98718 0.93229 1.21029 1.02079 0.91273 1.01194 1.17692 0.98890 0.83318 0.92484 1.91543 1.84101 1.50936 1.84634 1.20860 0.99811 0.99141 0.94317 1.20652 1.00199 0.92862 0.97724 1.20606 0.81084 1.03420 0.91727 0.92979 0.96212 0.96249 0.92803 0.92747 0.91703 0.91950 0.77300 0.90450 0.87125 0.87020 0.91704 0.84229 0.84162 0.83830 0.89119 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.13 2.35 5.68 -4.04 -0.02 2.33 16 12 N -0.74 -10.77 5.43 -65.22 -0.35 -11.13 16 13 C 0.70 10.68 8.26 -86.92 -0.72 9.96 16 14 O -0.59 -11.10 15.65 5.29 0.08 -11.02 16 15 N -0.63 -7.11 2.69 -180.72 -0.49 -7.59 16 16 C 0.10 0.90 6.25 -4.53 -0.03 0.87 16 17 C 0.05 0.38 6.68 36.74 0.25 0.62 16 18 O -0.32 -2.95 9.90 -18.16 -0.18 -3.13 16 19 C 0.10 0.95 5.59 -39.15 -0.22 0.73 16 20 C -0.11 -0.88 9.99 -39.39 -0.39 -1.27 16 21 C -0.14 -1.17 10.00 -39.55 -0.40 -1.56 16 22 C 0.10 0.98 7.31 -39.34 -0.29 0.69 16 23 F -0.13 -1.56 17.27 2.25 0.04 -1.52 16 24 C -0.12 -1.20 9.70 -39.66 -0.38 -1.58 16 25 C -0.11 -1.07 5.51 -104.17 -0.57 -1.65 16 26 C 0.16 1.38 5.48 -4.63 -0.03 1.36 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.39 4.69 6.07 -40.82 -0.25 4.45 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.11 1.16 6.85 -51.93 -0.36 0.80 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 39 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.14 1.26 8.01 -52.48 -0.42 0.84 16 42 H 0.09 0.72 5.84 -51.93 -0.30 0.41 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -33.66 360.43 -9.17 -42.83 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.93 Total: 0.53 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -3.49 Total: -4.82 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.10 Total: -44.77 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.10 Total: -14.15 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.66 -9.17 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494881813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.382 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds