Wall clock time and date at job start Tue Mar 31 2020 13:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 119.99803 * 2 1 4 4 H 1.48502 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47334 * 299.99749 * 3 2 1 6 6 H 1.48502 * 109.47572 * 59.99860 * 3 2 1 7 7 C 1.37876 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99715 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00102 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47318 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47073 * 180.02562 * 10 9 7 12 12 N 1.46510 * 109.46777 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99599 * 179.97438 * 12 11 10 14 14 O 1.21582 * 120.00469 * 4.96736 * 13 12 11 15 15 N 1.34777 * 119.99637 * 184.95688 * 13 12 11 16 16 C 1.46367 * 119.73834 * 174.77535 * 15 13 12 17 17 C 1.52188 * 111.18204 * 243.95598 * 16 15 13 18 18 O 1.43295 * 110.08896 * 299.03853 * 17 16 15 19 19 C 1.35489 * 115.75107 * 89.02769 * 18 17 16 20 20 C 1.38917 * 120.15341 * 108.65077 * 19 18 17 21 21 C 1.38085 * 119.95867 * 182.15798 * 20 19 18 22 22 C 1.38478 * 120.37905 * 0.12174 * 21 20 19 23 23 F 1.35099 * 120.07790 * 179.08544 * 22 21 20 24 24 C 1.38652 * 119.84698 * 359.05435 * 22 21 20 25 25 C 1.37599 * 119.62898 * 359.94595 * 24 22 21 26 26 C 1.46621 * 119.73884 * 354.75750 * 15 13 12 27 27 H 0.96994 * 120.00177 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46931 * 60.00647 * 9 7 2 29 29 H 1.08992 * 109.47926 * 300.00289 * 9 7 2 30 30 H 1.09000 * 109.46704 * 60.00134 * 10 9 7 31 31 H 1.09002 * 109.47063 * 300.00989 * 10 9 7 32 32 H 1.09003 * 109.47250 * 60.00816 * 11 10 9 33 33 H 1.09002 * 109.47610 * 299.99781 * 11 10 9 34 34 H 0.97001 * 119.99933 * 0.02562 * 12 11 10 35 35 H 1.08990 * 109.13901 * 123.51073 * 16 15 13 36 36 H 1.08998 * 109.13220 * 4.39070 * 16 15 13 37 37 H 1.09007 * 109.36428 * 178.85268 * 17 16 15 38 38 H 1.08994 * 109.37193 * 59.23388 * 17 16 15 39 39 H 1.08006 * 120.01570 * 2.13634 * 20 19 18 40 40 H 1.08001 * 119.81028 * 180.12096 * 21 20 19 41 41 H 1.08003 * 120.18383 * 179.97438 * 24 22 21 42 42 H 1.08995 * 109.57845 * 339.52707 * 26 15 13 43 43 H 1.08996 * 109.70116 * 219.17550 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 7 2.4323 -6.1007 0.0024 13 6 1.9830 -7.3713 0.0034 14 8 0.7913 -7.5948 -0.0872 15 7 2.8547 -8.3941 0.1046 16 6 2.3552 -9.7650 0.2207 17 6 2.7382 -10.3783 1.5598 18 8 4.1645 -10.4267 1.6891 19 6 4.7438 -9.3295 2.2336 20 6 5.2779 -9.3856 3.5147 21 6 5.8274 -8.2533 4.0829 22 6 5.8475 -7.0582 3.3837 23 9 6.3698 -5.9497 3.9525 24 6 5.3309 -7.0020 2.0983 25 6 4.8027 -8.1369 1.5271 26 6 4.2960 -8.1249 0.0972 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6247 -2.5564 0.8918 30 1 2.8726 -3.6040 0.8910 31 1 2.8714 -3.6047 -0.8890 32 1 0.8533 -5.0450 -0.8878 33 1 0.8539 -5.0448 0.8923 34 1 3.3860 -5.9234 0.0026 35 1 2.7776 -10.3685 -0.5827 36 1 1.2692 -9.7585 0.1282 37 1 2.3351 -11.3892 1.6229 38 1 2.3224 -9.7744 2.3662 39 1 5.2632 -10.3142 4.0660 40 1 6.2438 -8.3001 5.0783 41 1 5.3434 -6.0726 1.5482 42 1 4.4827 -7.1479 -0.3484 43 1 4.8105 -8.8937 -0.4792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494881813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:18 Heat of formation + Delta-G solvation = -104.823525 kcal Electronic energy + Delta-G solvation = -27118.545199 eV Core-core repulsion = 23077.737723 eV Total energy + Delta-G solvation = -4040.807477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.92857 -42.03972 -40.65847 -38.42465 -37.16573 -36.67007 -35.23411 -33.27129 -32.88693 -31.62517 -29.75371 -28.33835 -27.53966 -25.35337 -24.16129 -23.49190 -22.65734 -22.32133 -20.96253 -19.63876 -18.83835 -18.51988 -18.32491 -17.72088 -17.50989 -16.95830 -16.68763 -16.53041 -16.26020 -16.00563 -15.64107 -15.35229 -15.25164 -15.07034 -14.72007 -14.37381 -14.27788 -14.16362 -13.76703 -13.69008 -13.44930 -13.02872 -12.83903 -12.78622 -12.56489 -12.52439 -12.33785 -12.11067 -11.69728 -11.65914 -11.32431 -11.19973 -11.14563 -10.56066 -10.34166 -10.15023 -9.70771 -9.46737 -8.19629 -6.30819 -0.13701 0.06849 1.41499 1.41779 1.50897 1.55195 1.99871 2.17083 2.41673 2.73859 2.93397 3.14362 3.14419 3.51005 3.62290 3.92968 4.01190 4.03671 4.08402 4.15023 4.19636 4.21143 4.33636 4.44276 4.52272 4.54982 4.73673 4.76537 4.83370 4.94013 4.96103 5.02327 5.06799 5.14588 5.24044 5.36994 5.43115 5.52531 5.58272 5.70387 5.76454 5.84193 6.22388 6.35357 6.81576 6.87258 7.38699 7.42841 8.92715 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.003113 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.429064 B = 8991.335254 C =10670.753144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.101 4.101 11 C 0.149 3.851 12 N -0.730 5.730 13 C 0.701 3.299 14 O -0.629 6.629 15 N -0.622 5.622 16 C 0.092 3.908 17 C 0.054 3.946 18 O -0.324 6.324 19 C 0.090 3.910 20 C -0.105 4.105 21 C -0.132 4.132 22 C 0.072 3.928 23 F -0.146 7.146 24 C -0.129 4.129 25 C -0.120 4.120 26 C 0.153 3.847 27 H 0.263 0.737 28 H -0.006 1.006 29 H -0.008 1.008 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.406 0.594 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.144 0.856 38 H 0.050 0.950 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.149 0.851 42 H 0.100 0.900 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.506 -24.722 4.987 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.139 4.139 11 C 0.024 3.976 12 N -0.387 5.387 13 C 0.403 3.597 14 O -0.510 6.510 15 N -0.358 5.358 16 C -0.031 4.031 17 C -0.022 4.022 18 O -0.240 6.240 19 C 0.046 3.954 20 C -0.123 4.123 21 C -0.151 4.151 22 C 0.053 3.947 23 F -0.125 7.125 24 C -0.149 4.149 25 C -0.122 4.122 26 C 0.030 3.970 27 H 0.072 0.928 28 H 0.012 0.988 29 H 0.010 0.990 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.244 0.756 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.162 0.838 38 H 0.069 0.931 39 H 0.180 0.820 40 H 0.178 0.822 41 H 0.167 0.833 42 H 0.118 0.882 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.593 -24.907 4.864 28.789 hybrid contribution 0.264 1.713 0.202 1.745 sum 13.857 -23.195 5.066 27.490 Atomic orbital electron populations 1.70115 1.07906 1.27709 1.51770 1.26008 0.95738 1.03500 0.94822 0.85382 0.79219 0.78723 0.77617 1.18224 1.20534 1.20642 1.21697 0.93728 0.91978 1.50299 0.91571 1.18929 0.94397 0.92841 0.95137 1.21595 0.98501 0.91775 1.02022 1.21111 0.91305 0.84529 1.00610 1.45242 1.10709 1.03790 1.78957 1.16108 0.84757 0.81406 0.77479 1.90881 1.16207 1.84322 1.59633 1.47094 1.05482 1.06056 1.77204 1.21962 1.01861 0.80182 0.99093 1.23345 0.78271 1.04136 0.96398 1.86139 1.21480 1.35550 1.80834 1.18716 0.97993 0.86605 0.92118 1.21380 0.98491 0.99476 0.92942 1.21280 1.01277 0.90625 1.01909 1.17974 0.99972 0.83631 0.93096 1.91507 1.84463 1.51683 1.84861 1.20982 0.99913 0.99566 0.94402 1.20680 1.00626 0.92957 0.97972 1.20824 0.79462 1.04782 0.91926 0.92825 0.98802 0.98971 0.91609 0.91269 0.93139 0.93526 0.75571 0.88177 0.88616 0.83819 0.93143 0.81999 0.82183 0.83291 0.88182 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 3 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 11 C 0.15 5.34 5.68 86.38 0.49 5.83 16 12 N -0.73 -20.83 5.43 -478.53 -2.60 -23.43 16 13 C 0.70 20.98 8.26 179.06 1.48 22.46 16 14 O -0.63 -24.23 15.65 -3.98 -0.06 -24.29 16 15 N -0.62 -13.16 2.69 -843.94 -2.27 -15.43 16 16 C 0.09 1.54 6.25 86.14 0.54 2.08 16 17 C 0.05 0.73 6.68 71.71 0.48 1.21 16 18 O -0.32 -5.04 9.90 -87.89 -0.87 -5.91 16 19 C 0.09 1.52 5.59 22.55 0.13 1.64 16 20 C -0.10 -1.49 9.99 22.40 0.22 -1.27 16 21 C -0.13 -2.01 10.00 22.29 0.22 -1.79 16 22 C 0.07 1.41 7.31 22.43 0.16 1.58 16 23 F -0.15 -3.34 17.27 44.97 0.78 -2.56 16 24 C -0.13 -2.38 9.70 22.22 0.22 -2.17 16 25 C -0.12 -2.09 5.51 -19.57 -0.11 -2.20 16 26 C 0.15 2.39 5.48 85.93 0.47 2.86 16 27 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.41 9.11 6.07 -92.71 -0.56 8.55 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.95 6.85 -2.39 -0.02 1.94 16 37 H 0.14 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.05 0.85 7.88 -2.39 -0.02 0.83 16 39 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 40 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.15 2.44 8.01 -2.91 -0.02 2.42 16 42 H 0.10 1.36 5.84 -2.39 -0.01 1.34 16 43 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -73.74 360.43 3.07 -70.67 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.47 Total: 13.48 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 5.31 Total: -1.61 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -4.58 Total: -95.74 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.93 Total: -30.20 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.74 3.07 -70.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494881813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.151 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds