Wall clock time and date at job start Tue Mar 31 2020 13:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00432 * 2 1 4 4 H 1.48504 * 109.47131 * 270.00379 * 3 2 1 5 5 H 1.48502 * 109.46860 * 30.00307 * 3 2 1 6 6 H 1.48499 * 109.47021 * 150.00483 * 3 2 1 7 7 C 1.37878 * 119.99520 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00186 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00336 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47342 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47038 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47023 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00263 * 180.02562 * 12 11 10 14 14 O 1.21666 * 119.99733 * 359.97438 * 13 12 11 15 15 C 1.46891 * 120.00275 * 179.97438 * 13 12 11 16 16 C 1.36306 * 125.55668 * 179.97438 * 15 13 12 17 17 C 1.40704 * 107.63985 * 179.97438 * 16 15 13 18 18 C 1.40345 * 107.31641 * 359.97438 * 17 16 15 19 19 C 1.40178 * 119.95789 * 180.02562 * 18 17 16 20 20 C 1.35445 * 121.68328 * 359.97438 * 19 18 17 21 21 C 1.40989 * 121.16024 * 0.02562 * 20 19 18 22 22 C 1.40364 * 121.17546 * 179.97438 * 21 20 19 23 23 C 1.36289 * 119.69917 * 180.02562 * 22 21 20 24 24 C 1.39117 * 120.93155 * 359.97420 * 23 22 21 25 25 C 1.36475 * 120.82754 * 0.03952 * 24 23 22 26 26 C 1.39738 * 119.68431 * 359.96451 * 25 24 23 27 27 N 1.37259 * 107.32771 * 359.97438 * 18 17 16 28 28 H 0.97001 * 125.58615 * 179.97438 * 27 18 17 29 29 H 0.97003 * 119.99212 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47693 * 59.99899 * 9 7 2 31 31 H 1.09002 * 109.46748 * 299.99925 * 9 7 2 32 32 H 1.09002 * 109.47182 * 59.99837 * 10 9 7 33 33 H 1.08994 * 109.47251 * 299.99942 * 10 9 7 34 34 H 1.08994 * 109.47226 * 59.99733 * 11 10 9 35 35 H 1.09002 * 109.47092 * 299.99897 * 11 10 9 36 36 H 0.97007 * 120.00496 * 0.02562 * 12 11 10 37 37 H 1.07995 * 126.17677 * 359.97438 * 16 15 13 38 38 H 1.08003 * 119.15997 * 180.02562 * 19 18 17 39 39 H 1.07995 * 119.41886 * 179.72055 * 20 19 18 40 40 H 1.08000 * 120.14961 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.53405 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.58590 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.15728 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9872 0.0001 12 7 2.4319 -6.1007 0.0007 13 6 1.9826 -7.3714 0.0008 14 8 0.7864 -7.5936 0.0009 15 6 2.9371 -8.4879 0.0009 16 6 2.6092 -9.8110 0.0015 17 6 3.8082 -10.5474 0.0007 18 6 4.8653 -9.6243 -0.0010 19 6 6.1914 -10.0788 -0.0026 20 6 6.4907 -11.3997 -0.0021 21 6 5.4753 -12.3778 -0.0004 22 6 5.7851 -13.7468 -0.0004 23 6 4.7795 -14.6667 0.0007 24 6 3.4464 -14.2689 0.0024 25 6 3.1114 -12.9459 0.0021 26 6 4.1184 -11.9770 0.0009 27 7 4.3115 -8.3684 -0.0018 28 1 4.8055 -7.5336 -0.0026 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5568 -0.8902 31 1 0.6246 -2.5570 0.8897 32 1 2.8718 -3.6045 0.8894 33 1 2.8718 -3.6045 -0.8905 34 1 0.8530 -5.0451 -0.8896 35 1 0.8536 -5.0446 0.8904 36 1 3.3856 -5.9236 0.0011 37 1 1.6097 -10.2201 0.0024 38 1 6.9950 -9.3571 -0.0035 39 1 7.5254 -11.7092 -0.0080 40 1 6.8157 -14.0698 -0.0021 41 1 5.0209 -15.7194 0.0003 42 1 2.6668 -15.0164 0.0036 43 1 2.0730 -12.6492 0.0030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505518184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:49 Heat of formation + Delta-G solvation = 19.162555 kcal Electronic energy + Delta-G solvation = -24532.105524 eV Core-core repulsion = 20927.443712 eV Total energy + Delta-G solvation = -3604.661812 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88500 -39.77881 -38.84143 -35.61465 -35.50374 -33.47208 -32.76474 -31.38061 -31.09218 -29.46449 -28.77633 -26.83202 -24.34208 -23.41016 -22.89635 -22.53395 -20.98191 -20.67557 -20.08264 -18.90374 -18.16514 -16.75653 -16.47699 -16.25649 -15.69830 -15.66218 -15.17666 -14.81194 -14.78236 -14.49837 -14.00753 -13.96378 -13.84404 -13.54258 -13.31370 -13.13547 -13.13267 -12.37903 -12.34430 -11.91608 -11.83075 -11.39718 -11.11370 -11.08443 -10.95246 -10.83292 -10.66141 -10.23850 -10.19956 -9.95666 -9.50077 -9.32007 -9.18540 -8.97759 -8.42097 -8.30643 -7.82290 -6.06593 -4.10097 0.17307 0.82469 1.32961 2.09785 2.58823 2.76823 3.13297 3.27187 3.28420 3.33886 3.36303 3.89056 4.27443 4.39698 4.46144 4.53199 4.69007 4.70850 4.76030 4.88120 5.01115 5.07223 5.28356 5.29246 5.32784 5.56981 5.57322 5.63466 5.66898 5.78838 5.93395 5.94908 6.04901 6.18140 6.22672 6.26995 6.28219 6.44251 6.49103 6.60615 6.69948 6.76112 6.90167 7.02075 7.48978 7.57306 7.69156 7.91361 8.12519 8.32196 8.96268 9.54346 11.04591 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.001859 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.524533 B =15059.097250 C =15882.873757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.723 5.723 13 C 0.578 3.422 14 O -0.524 6.524 15 C 0.006 3.994 16 C -0.099 4.099 17 C -0.116 4.116 18 C 0.095 3.905 19 C -0.104 4.104 20 C -0.085 4.085 21 C -0.069 4.069 22 C -0.098 4.098 23 C -0.129 4.129 24 C -0.111 4.111 25 C -0.109 4.109 26 C 0.006 3.994 27 N -0.552 5.552 28 H 0.420 0.580 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.393 0.607 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 -28.533 -0.002 31.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.373 5.373 13 C 0.364 3.636 14 O -0.400 6.400 15 C -0.105 4.105 16 C -0.125 4.125 17 C -0.121 4.121 18 C -0.018 4.018 19 C -0.124 4.124 20 C -0.105 4.105 21 C -0.070 4.070 22 C -0.116 4.116 23 C -0.147 4.147 24 C -0.129 4.129 25 C -0.127 4.127 26 C 0.005 3.995 27 N -0.153 5.153 28 H 0.258 0.742 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.226 0.774 37 H 0.173 0.827 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.849 -28.336 0.001 31.114 hybrid contribution 1.206 1.562 -0.010 1.974 sum 14.056 -26.775 -0.008 30.240 Atomic orbital electron populations 1.69965 1.06050 1.26749 1.50347 1.25031 0.94875 0.99329 0.95212 0.86574 0.79774 0.83402 0.78110 1.20641 1.21150 1.19930 1.21180 0.92957 0.90921 1.51205 0.92679 1.19032 0.93822 0.90761 0.97783 1.21908 0.99858 0.93303 1.00865 1.21742 0.91721 0.84658 1.02491 1.46135 1.10629 1.05917 1.74592 1.17137 0.87353 0.81753 0.77400 1.90861 1.14841 1.84240 1.50011 1.20301 0.81707 0.95625 1.12890 1.20674 0.98283 0.90023 1.03524 1.18819 0.92500 0.91611 1.09207 1.18241 0.94299 0.83922 1.05336 1.19701 0.92564 0.96311 1.03793 1.20618 0.98712 0.91507 0.99631 1.17903 0.92279 0.93726 1.03070 1.20971 0.99471 0.91622 0.99560 1.20799 0.92888 0.99625 1.01409 1.20901 0.96471 0.95966 0.99584 1.20870 0.99086 0.92527 1.00238 1.18277 0.92522 0.90502 0.98198 1.41964 1.05619 1.07222 1.60471 0.74214 0.92872 0.96167 0.96166 0.92705 0.92703 0.91270 0.91277 0.77418 0.82700 0.85842 0.85057 0.85643 0.86114 0.85956 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 11 C 0.12 1.96 5.67 -4.04 -0.02 1.94 16 12 N -0.72 -9.91 5.55 -61.56 -0.34 -10.25 16 13 C 0.58 8.63 7.79 -12.76 -0.10 8.53 16 14 O -0.52 -9.74 16.85 5.22 0.09 -9.65 16 15 C 0.01 0.08 6.98 -82.30 -0.57 -0.49 16 16 C -0.10 -1.23 10.43 -39.35 -0.41 -1.64 16 17 C -0.12 -1.35 6.20 -104.94 -0.65 -2.00 16 18 C 0.10 0.98 7.25 -83.92 -0.61 0.38 16 19 C -0.10 -0.85 9.91 -39.85 -0.40 -1.25 16 20 C -0.08 -0.66 9.67 -39.54 -0.38 -1.05 16 21 C -0.07 -0.64 5.74 -106.82 -0.61 -1.26 16 22 C -0.10 -0.74 9.77 -39.48 -0.39 -1.12 16 23 C -0.13 -0.92 9.95 -39.96 -0.40 -1.32 16 24 C -0.11 -0.86 9.96 -39.89 -0.40 -1.26 16 25 C -0.11 -1.02 9.74 -39.66 -0.39 -1.41 16 26 C 0.01 0.06 5.89 -104.86 -0.62 -0.56 16 27 N -0.55 -5.36 6.06 -7.29 -0.04 -5.40 16 28 H 0.42 2.84 8.12 -40.82 -0.33 2.51 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.39 4.14 7.53 -40.82 -0.31 3.84 16 37 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 43 H 0.13 1.05 8.04 -52.49 -0.42 0.63 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -33.61 369.31 -11.32 -44.93 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.68 Total: 1.99 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -6.63 Total: -17.67 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.35 Total: -41.38 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.61 -11.32 -44.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505518184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.096 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds