Wall clock time and date at job start Tue Mar 31 2020 13:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00432 * 2 1 4 4 H 1.48504 * 109.47131 * 270.00379 * 3 2 1 5 5 H 1.48502 * 109.46860 * 30.00307 * 3 2 1 6 6 H 1.48499 * 109.47021 * 150.00483 * 3 2 1 7 7 C 1.37878 * 119.99520 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00186 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00336 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47342 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47038 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47023 * 180.02562 * 11 10 9 13 13 C 1.34781 * 120.00263 * 180.02562 * 12 11 10 14 14 O 1.21666 * 119.99733 * 359.97438 * 13 12 11 15 15 C 1.46891 * 120.00275 * 179.97438 * 13 12 11 16 16 C 1.36306 * 125.55668 * 179.97438 * 15 13 12 17 17 C 1.40704 * 107.63985 * 179.97438 * 16 15 13 18 18 C 1.40345 * 107.31641 * 359.97438 * 17 16 15 19 19 C 1.40178 * 119.95789 * 180.02562 * 18 17 16 20 20 C 1.35445 * 121.68328 * 359.97438 * 19 18 17 21 21 C 1.40989 * 121.16024 * 0.02562 * 20 19 18 22 22 C 1.40364 * 121.17546 * 179.97438 * 21 20 19 23 23 C 1.36289 * 119.69917 * 180.02562 * 22 21 20 24 24 C 1.39117 * 120.93155 * 359.97420 * 23 22 21 25 25 C 1.36475 * 120.82754 * 0.03952 * 24 23 22 26 26 C 1.39738 * 119.68431 * 359.96451 * 25 24 23 27 27 N 1.37259 * 107.32771 * 359.97438 * 18 17 16 28 28 H 0.97001 * 125.58615 * 179.97438 * 27 18 17 29 29 H 0.97003 * 119.99212 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47693 * 59.99899 * 9 7 2 31 31 H 1.09002 * 109.46748 * 299.99925 * 9 7 2 32 32 H 1.09002 * 109.47182 * 59.99837 * 10 9 7 33 33 H 1.08994 * 109.47251 * 299.99942 * 10 9 7 34 34 H 1.08994 * 109.47226 * 59.99733 * 11 10 9 35 35 H 1.09002 * 109.47092 * 299.99897 * 11 10 9 36 36 H 0.97007 * 120.00496 * 0.02562 * 12 11 10 37 37 H 1.07995 * 126.17677 * 359.97438 * 16 15 13 38 38 H 1.08003 * 119.15997 * 180.02562 * 19 18 17 39 39 H 1.07995 * 119.41886 * 179.72055 * 20 19 18 40 40 H 1.08000 * 120.14961 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.53405 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.58590 * 180.02562 * 24 23 22 43 43 H 1.07999 * 120.15728 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9872 0.0001 12 7 2.4319 -6.1007 0.0007 13 6 1.9826 -7.3714 0.0008 14 8 0.7864 -7.5936 0.0009 15 6 2.9371 -8.4879 0.0009 16 6 2.6092 -9.8110 0.0015 17 6 3.8082 -10.5474 0.0007 18 6 4.8653 -9.6243 -0.0010 19 6 6.1914 -10.0788 -0.0026 20 6 6.4907 -11.3997 -0.0021 21 6 5.4753 -12.3778 -0.0004 22 6 5.7851 -13.7468 -0.0004 23 6 4.7795 -14.6667 0.0007 24 6 3.4464 -14.2689 0.0024 25 6 3.1114 -12.9459 0.0021 26 6 4.1184 -11.9770 0.0009 27 7 4.3115 -8.3684 -0.0018 28 1 4.8055 -7.5336 -0.0026 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5568 -0.8902 31 1 0.6246 -2.5570 0.8897 32 1 2.8718 -3.6045 0.8894 33 1 2.8718 -3.6045 -0.8905 34 1 0.8530 -5.0451 -0.8896 35 1 0.8536 -5.0446 0.8904 36 1 3.3856 -5.9236 0.0011 37 1 1.6097 -10.2201 0.0024 38 1 6.9950 -9.3571 -0.0035 39 1 7.5254 -11.7092 -0.0080 40 1 6.8157 -14.0698 -0.0021 41 1 5.0209 -15.7194 0.0003 42 1 2.6668 -15.0164 0.0036 43 1 2.0730 -12.6492 0.0030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505518184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:48 Heat of formation + Delta-G solvation = -0.563328 kcal Electronic energy + Delta-G solvation = -24532.960903 eV Core-core repulsion = 20927.443712 eV Total energy + Delta-G solvation = -3605.517191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.69982 -40.73912 -39.73949 -37.08903 -36.17119 -35.28620 -33.60000 -33.02242 -31.85117 -30.18493 -29.74418 -28.41525 -25.69269 -24.25828 -23.89029 -23.44879 -22.40688 -21.70783 -21.11992 -19.78856 -18.99862 -18.53620 -17.48675 -16.99532 -16.90976 -16.85624 -16.45871 -15.92354 -15.91760 -15.65317 -15.10398 -14.92352 -14.77302 -14.32539 -14.15575 -14.09942 -13.88472 -13.83035 -13.77208 -13.53282 -12.98718 -12.77388 -12.59282 -12.41556 -11.97508 -11.76086 -11.74482 -11.71623 -11.69134 -11.33936 -11.14562 -10.91904 -10.56791 -10.34599 -10.00066 -9.00809 -8.55389 -8.20873 -6.32415 -0.53209 0.15743 0.50565 1.30956 1.40858 1.42029 1.52864 1.75682 1.99241 2.12607 2.19775 2.40961 3.13078 3.23174 3.56039 3.68554 3.86779 3.96138 4.05812 4.09319 4.16450 4.19378 4.24321 4.40523 4.49521 4.49814 4.61202 4.68128 4.83468 4.88828 4.89729 5.04341 5.11229 5.15406 5.25771 5.26771 5.35688 5.44141 5.49548 5.53149 5.67411 5.68034 5.71673 5.82304 5.94532 6.13931 6.19875 6.28200 6.43608 6.84987 6.97121 7.37250 8.91097 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.001859 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.524533 B =15059.097250 C =15882.873757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.102 4.102 11 C 0.129 3.871 12 N -0.709 5.709 13 C 0.582 3.418 14 O -0.569 6.569 15 C -0.012 4.012 16 C -0.106 4.106 17 C -0.145 4.145 18 C 0.101 3.899 19 C -0.118 4.118 20 C -0.072 4.072 21 C -0.089 4.089 22 C -0.096 4.096 23 C -0.134 4.134 24 C -0.110 4.110 25 C -0.134 4.134 26 C -0.018 4.018 27 N -0.539 5.539 28 H 0.433 0.567 29 H 0.263 0.737 30 H -0.007 1.007 31 H -0.007 1.007 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.411 0.589 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.959 -29.840 -0.005 34.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.006 3.994 12 N -0.360 5.360 13 C 0.369 3.631 14 O -0.448 6.448 15 C -0.124 4.124 16 C -0.133 4.133 17 C -0.150 4.150 18 C -0.013 4.013 19 C -0.138 4.138 20 C -0.091 4.091 21 C -0.089 4.089 22 C -0.114 4.114 23 C -0.152 4.152 24 C -0.128 4.128 25 C -0.152 4.152 26 C -0.019 4.019 27 N -0.140 5.140 28 H 0.274 0.726 29 H 0.072 0.928 30 H 0.012 0.988 31 H 0.012 0.988 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.248 0.752 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.184 0.816 40 H 0.174 0.826 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.982 -29.634 -0.002 34.155 hybrid contribution -0.024 1.752 -0.009 1.753 sum 16.958 -27.881 -0.012 32.634 Atomic orbital electron populations 1.70114 1.07924 1.27780 1.51592 1.26026 0.95755 1.03563 0.94802 0.85414 0.78679 0.78311 0.78425 1.19861 1.21097 1.18416 1.21672 0.93764 0.91970 1.50537 0.91471 1.18951 0.94471 0.92901 0.95223 1.21610 0.98505 0.91583 1.02272 1.21346 0.91803 0.84983 1.01316 1.45818 1.11131 1.04825 1.74188 1.17384 0.87149 0.82272 0.76263 1.90831 1.16892 1.84907 1.52187 1.19763 0.82603 0.94457 1.15562 1.20773 0.98696 0.90505 1.03342 1.19015 0.92491 0.92724 1.10806 1.18615 0.95132 0.83584 1.03940 1.20037 0.92095 0.97317 1.04333 1.21074 1.00024 0.90995 0.97047 1.18265 0.91965 0.95211 1.03493 1.21363 1.01146 0.90768 0.98095 1.21186 0.92403 1.01155 1.00429 1.21220 0.97762 0.95619 0.98211 1.21009 0.99022 0.93426 1.01780 1.18532 0.93837 0.90245 0.99241 1.41815 1.04460 1.07915 1.59847 0.72567 0.92830 0.98836 0.98834 0.91200 0.91177 0.92611 0.92622 0.75240 0.83412 0.82867 0.81558 0.82611 0.83387 0.84068 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.79 5.27 30.60 0.16 -3.62 16 11 C 0.13 4.45 5.67 86.38 0.49 4.94 16 12 N -0.71 -19.34 5.55 -466.89 -2.59 -21.93 16 13 C 0.58 17.94 7.79 86.51 0.67 18.61 16 14 O -0.57 -22.38 16.85 -4.24 -0.07 -22.45 16 15 C -0.01 -0.31 6.98 40.00 0.28 -0.03 16 16 C -0.11 -2.80 10.43 22.42 0.23 -2.56 16 17 C -0.15 -3.44 6.20 -20.07 -0.12 -3.56 16 18 C 0.10 1.99 7.25 39.28 0.28 2.27 16 19 C -0.12 -1.62 9.91 22.10 0.22 -1.40 16 20 C -0.07 -0.89 9.67 22.30 0.22 -0.67 16 21 C -0.09 -1.47 5.74 -21.29 -0.12 -1.59 16 22 C -0.10 -1.14 9.77 22.33 0.22 -0.92 16 23 C -0.13 -1.55 9.95 22.03 0.22 -1.33 16 24 C -0.11 -1.58 9.96 22.07 0.22 -1.36 16 25 C -0.13 -2.56 9.74 22.22 0.22 -2.35 16 26 C -0.02 -0.38 5.89 -20.02 -0.12 -0.50 16 27 N -0.54 -9.96 6.06 -176.99 -1.07 -11.03 16 28 H 0.43 5.09 8.12 -92.71 -0.75 4.34 16 29 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.41 8.09 7.53 -92.70 -0.70 7.39 16 37 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 38 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.12 2.26 8.04 -2.91 -0.02 2.24 16 Total: -1.00 -75.47 369.31 2.08 -73.39 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -0.40 Total: 15.12 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 3.91 Total: -22.08 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -3.38 Total: -89.37 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.07 Total: -22.45 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -75.47 2.08 -73.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505518184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.826 kcal (2) G-P(sol) polarization free energy of solvation -75.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds