Wall clock time and date at job start Tue Mar 31 2020 12:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28441 * 125.18829 * 2 1 4 4 C 1.30862 * 110.92518 * 179.97438 * 3 2 1 5 5 N 1.48020 * 126.06850 * 180.02562 * 4 3 2 6 6 O 1.21798 * 119.99772 * 359.97218 * 5 4 3 7 7 O 1.21800 * 119.99847 * 179.97438 * 5 4 3 8 8 C 1.39678 * 107.86287 * 359.73728 * 4 3 2 9 9 C 1.36603 * 125.18919 * 179.97438 * 2 1 3 10 10 C 1.47160 * 126.88196 * 0.04628 * 9 2 1 11 11 O 1.21626 * 120.00378 * 333.35405 * 10 9 2 12 12 N 1.34776 * 119.99712 * 153.35957 * 10 9 2 13 13 C 1.46927 * 120.62933 * 351.34417 * 12 10 9 14 14 C 1.53191 * 108.77273 * 233.88047 * 13 12 10 15 15 C 1.53047 * 109.31649 * 305.36433 * 14 13 12 16 16 C 1.52996 * 109.46321 * 181.38509 * 15 14 13 17 17 C 1.50698 * 109.47090 * 64.93056 * 16 15 14 18 18 H 1.08001 * 120.00148 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00363 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99678 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00442 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46893 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47233 * 120.00053 * 21 19 17 24 24 H 1.48500 * 109.46975 * 240.00165 * 21 19 17 25 25 C 1.53043 * 109.53478 * 61.36208 * 15 14 13 26 26 C 1.46924 * 120.63021 * 171.61919 * 12 10 9 27 27 H 1.08997 * 109.47560 * 264.55901 * 1 2 3 28 28 H 1.09000 * 109.46858 * 24.56470 * 1 2 3 29 29 H 1.09007 * 109.46744 * 144.55753 * 1 2 3 30 30 H 1.08000 * 127.32154 * 180.26799 * 8 4 3 31 31 H 1.08994 * 109.58978 * 353.66761 * 13 12 10 32 32 H 1.09001 * 109.58662 * 114.09627 * 13 12 10 33 33 H 1.09004 * 109.49647 * 185.41710 * 14 13 12 34 34 H 1.08993 * 109.49683 * 65.32039 * 14 13 12 35 35 H 1.09000 * 109.45696 * 301.34792 * 15 14 13 36 36 H 1.08990 * 109.47358 * 184.93736 * 16 15 14 37 37 H 1.09003 * 109.47097 * 304.93633 * 16 15 14 38 38 H 0.96995 * 120.00276 * 180.02562 * 20 19 17 39 39 H 1.08994 * 109.50024 * 178.68219 * 25 15 14 40 40 H 1.09004 * 109.49388 * 58.58740 * 25 15 14 41 41 H 1.09005 * 109.58841 * 245.90605 * 26 12 10 42 42 H 1.08997 * 109.58881 * 6.18965 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 0.0005 5 7 4.6129 1.6722 0.0013 6 8 4.4083 2.8728 0.0009 7 8 5.7550 1.2489 0.0022 8 6 3.5612 -0.6667 0.0070 9 6 2.2522 -1.1164 0.0005 10 6 1.7992 -2.5165 0.0002 11 8 0.7160 -2.8054 0.4718 12 7 2.5848 -3.4788 -0.5227 13 6 3.8049 -3.1290 -1.2628 14 6 3.7576 -3.8027 -2.6378 15 6 3.5414 -5.3071 -2.4574 16 6 3.5281 -5.9881 -3.8273 17 6 4.8851 -5.8529 -4.4687 18 1 5.6778 -5.3335 -3.9508 19 6 5.1149 -6.3931 -5.7162 20 7 4.1497 -7.0261 -6.3467 21 14 6.7971 -6.2261 -6.5110 22 1 7.7015 -5.4766 -5.6024 23 1 7.3603 -7.5762 -6.7661 24 1 6.6669 -5.4931 -7.7959 25 6 2.2045 -5.5511 -1.7536 26 6 2.2342 -4.8972 -0.3686 27 1 -0.3634 -0.0974 1.0230 28 1 -0.3633 0.9347 -0.4272 29 1 -0.3633 -0.8373 -0.5960 30 1 4.4595 -1.2663 0.0132 31 1 3.8593 -2.0476 -1.3875 32 1 4.6786 -3.4801 -0.7138 33 1 4.6988 -3.6305 -3.1599 34 1 2.9364 -3.3844 -3.2198 35 1 4.3499 -5.7203 -1.8544 36 1 3.2873 -7.0441 -3.7058 37 1 2.7780 -5.5150 -4.4610 38 1 4.3114 -7.4065 -7.2241 39 1 2.0402 -6.6233 -1.6463 40 1 1.3979 -5.1163 -2.3439 41 1 2.9799 -5.3925 0.2534 42 1 1.2534 -4.9825 0.0992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516973099.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:41 Heat of formation + Delta-G solvation = 47.564111 kcal Electronic energy + Delta-G solvation = -27421.472576 eV Core-core repulsion = 23407.193084 eV Total energy + Delta-G solvation = -4014.279491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.78496 -42.09518 -40.20836 -37.67976 -36.80623 -34.73408 -34.06703 -32.71656 -31.88662 -30.62440 -29.23218 -28.29723 -26.07090 -25.29538 -23.57240 -23.36557 -22.27934 -21.57900 -20.68555 -19.50369 -18.92535 -18.21664 -18.07433 -17.36861 -17.08041 -16.83004 -16.40175 -15.89477 -15.34727 -14.79509 -14.53832 -14.16018 -13.89880 -13.61029 -13.40075 -13.25285 -13.16930 -12.99471 -12.46933 -12.05594 -11.91658 -11.85733 -11.53445 -11.38245 -11.33244 -11.14686 -10.98097 -10.83474 -10.61547 -10.45412 -10.32228 -10.28091 -9.99703 -9.71559 -9.42857 -9.07480 -8.70904 -8.43369 -6.07886 -4.10497 -0.14504 0.48718 0.56802 1.69841 1.74917 2.51053 2.69629 3.25723 3.34407 3.36903 3.54937 3.77785 4.27530 4.39066 4.43484 4.56123 4.57785 4.84233 4.92649 5.11777 5.14132 5.21704 5.25533 5.30880 5.45716 5.51586 5.59517 5.75264 5.79214 6.00876 6.09449 6.18258 6.31504 6.38986 6.71992 6.76756 6.81835 6.95750 7.06388 7.44098 7.56745 7.64221 7.69197 7.90723 8.32307 8.96174 9.54353 11.03275 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012829 B = 0.003408 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.978088 B = 8212.817225 C = 9793.739569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.217 5.217 3 N -0.199 5.199 4 C 0.067 3.933 5 N 0.065 4.935 6 O -0.133 6.133 7 O -0.133 6.133 8 C -0.125 4.125 9 C -0.010 4.010 10 C 0.588 3.412 11 O -0.536 6.536 12 N -0.581 5.581 13 C 0.082 3.918 14 C -0.119 4.119 15 C -0.082 4.082 16 C 0.028 3.972 17 C -0.519 4.519 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.888 3.112 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.130 4.130 26 C 0.114 3.886 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.195 0.805 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.017 0.983 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 11.442 14.404 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.011 5.011 3 N -0.043 5.043 4 C -0.167 4.167 5 N 0.590 4.410 6 O -0.352 6.352 7 O -0.349 6.349 8 C -0.154 4.154 9 C -0.138 4.138 10 C 0.373 3.627 11 O -0.414 6.414 12 N -0.312 5.312 13 C -0.040 4.040 14 C -0.157 4.157 15 C -0.101 4.101 16 C -0.009 4.009 17 C -0.557 4.557 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.716 3.284 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.168 4.168 26 C -0.008 4.008 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.212 0.788 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.175 11.606 14.487 20.283 hybrid contribution 1.699 -0.312 -0.663 1.850 sum -6.476 11.294 13.824 18.989 Atomic orbital electron populations 1.22646 0.69788 1.06653 1.06435 1.45902 1.08791 1.00868 1.45530 1.72974 1.01491 1.13936 1.15885 1.22131 0.87266 0.89059 1.18278 1.42076 1.00312 1.00567 0.98007 1.94604 1.91511 0.96748 1.52366 1.94613 1.04054 1.82936 1.53255 1.22257 0.98045 0.91264 1.03853 1.21698 0.89790 0.90909 1.11368 1.16626 0.84391 0.82222 0.79438 1.90831 1.20504 1.82232 1.47791 1.47941 1.24888 1.06591 1.51808 1.22582 0.85824 1.01120 0.94487 1.21922 1.03783 0.96471 0.93482 1.21227 0.94574 0.94448 0.99827 1.19119 0.97159 0.95360 0.89290 1.21256 0.97150 1.35388 1.01890 0.92465 1.25020 0.96704 0.95273 0.97396 1.69967 1.32040 1.36987 1.14405 0.86593 0.84507 0.77842 0.79421 1.19644 1.21042 1.21071 1.22048 0.99928 1.00580 0.94239 1.21858 1.02010 0.77929 0.98960 0.87784 0.87322 0.86908 0.78770 0.89480 0.90266 0.89109 0.92237 0.92004 0.96484 0.96672 0.93038 0.90603 0.91900 0.90832 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.53 59.85 0.63 1.17 16 2 N -0.22 -2.23 3.75 -63.88 -0.24 -2.47 16 3 N -0.20 -2.38 11.87 32.98 0.39 -1.99 16 4 C 0.07 0.83 8.15 -146.46 -1.19 -0.37 16 5 N 0.06 0.87 4.45 32.99 0.15 1.02 16 6 O -0.13 -1.89 19.23 -29.46 -0.57 -2.46 16 7 O -0.13 -1.78 19.05 -29.46 -0.56 -2.34 16 8 C -0.13 -1.34 8.32 -38.98 -0.32 -1.67 16 9 C -0.01 -0.11 6.41 -82.06 -0.53 -0.64 16 10 C 0.59 7.17 7.45 -12.64 -0.09 7.08 16 11 O -0.54 -7.39 15.09 5.25 0.08 -7.32 16 12 N -0.58 -6.98 2.97 -174.14 -0.52 -7.50 16 13 C 0.08 0.95 5.18 -3.71 -0.02 0.93 16 14 C -0.12 -1.83 5.19 -26.61 -0.14 -1.97 16 15 C -0.08 -1.42 2.10 -90.58 -0.19 -1.61 16 16 C 0.03 0.64 4.45 -27.89 -0.12 0.52 16 17 C -0.52 -13.42 8.39 -34.44 -0.29 -13.71 16 18 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 21 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 C -0.13 -1.88 5.36 -26.61 -0.14 -2.02 16 26 C 0.11 1.37 6.44 -3.71 -0.02 1.34 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.11 0.73 7.40 -51.93 -0.38 0.35 16 30 H 0.20 1.69 6.45 -52.49 -0.34 1.35 16 31 H 0.09 0.91 4.28 -51.93 -0.22 0.69 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.52 6.91 -51.93 -0.36 1.16 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -31.27 352.82 -8.17 -39.44 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -5.40 Total: -2.87 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.53 Total: -9.47 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.52 Total: -36.00 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.05 Total: -12.11 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.27 -8.17 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516973099.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.005 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds