Wall clock time and date at job start Tue Mar 31 2020 13:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86799 * 119.99767 * 2 1 4 4 H 1.48496 * 109.47117 * 240.00042 * 3 2 1 5 5 H 1.48499 * 109.47400 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46643 * 120.00291 * 3 2 1 7 7 C 1.40032 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99334 * 190.01113 * 7 2 1 9 9 C 1.41542 * 120.00179 * 10.01696 * 7 2 1 10 10 C 1.41173 * 120.99234 * 205.97517 * 9 7 2 11 11 C 1.37590 * 119.01124 * 179.97438 * 10 9 7 12 12 N 1.32079 * 121.11009 * 359.97438 * 11 10 9 13 13 C 1.32465 * 122.23225 * 0.02562 * 12 11 10 14 14 N 1.39471 * 119.57764 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00341 * 5.57784 * 14 13 12 16 16 O 1.21273 * 119.99785 * 354.87151 * 15 14 13 17 17 C 1.50696 * 120.00107 * 174.86804 * 15 14 13 18 18 C 1.53004 * 109.47159 * 186.04674 * 17 15 14 19 19 C 1.50691 * 115.55006 * 65.04155 * 18 17 15 20 20 C 1.38240 * 120.00064 * 31.68674 * 19 18 17 21 21 C 1.38239 * 120.00137 * 180.02562 * 20 19 18 22 22 C 1.38236 * 119.99881 * 0.02562 * 21 20 19 23 23 C 1.38243 * 119.99864 * 359.97176 * 22 21 20 24 24 C 1.38228 * 119.99956 * 0.05133 * 23 22 21 25 25 C 1.52995 * 117.51331 * 210.74841 * 18 17 15 26 26 C 1.52991 * 60.00180 * 107.47638 * 25 18 17 27 27 C 1.38593 * 120.83951 * 0.25749 * 13 12 11 28 28 H 0.97000 * 119.99888 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.49712 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.44194 * 180.02562 * 11 10 9 31 31 H 0.97004 * 119.99976 * 185.58099 * 14 13 12 32 32 H 1.09000 * 109.47264 * 66.04271 * 17 15 14 33 33 H 1.09004 * 109.46961 * 306.04353 * 17 15 14 34 34 H 1.07992 * 120.00128 * 359.97438 * 20 19 18 35 35 H 1.07995 * 120.00086 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.00021 * 179.70038 * 22 21 20 37 37 H 1.07998 * 119.99798 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.99804 * 179.97438 * 24 23 22 39 39 H 1.09008 * 117.49569 * 214.96726 * 25 18 17 40 40 H 1.08996 * 117.50631 * 359.97438 * 25 18 17 41 41 H 1.09003 * 117.50054 * 252.50321 * 26 25 18 42 42 H 1.09011 * 117.52087 * 107.47500 * 26 25 18 43 43 H 1.08006 * 120.59970 * 179.72158 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0753 -1.2198 0.1621 9 6 1.3161 -2.4291 -0.2143 10 6 1.8160 -3.6483 0.2922 11 6 1.1103 -4.8065 0.0608 12 7 -0.0196 -4.7921 -0.6230 13 6 -0.5309 -3.6754 -1.1191 14 7 -1.7279 -3.7242 -1.8334 15 6 -2.4145 -4.8808 -1.9197 16 8 -1.9470 -5.8994 -1.4566 17 6 -3.7631 -4.9081 -2.5917 18 6 -4.3891 -6.2939 -2.4228 19 6 -4.7241 -6.6876 -1.0073 20 6 -5.0970 -5.7219 -0.0911 21 6 -5.4038 -6.0830 1.2075 22 6 -5.3373 -7.4097 1.5901 23 6 -4.9645 -8.3754 0.6738 24 6 -4.6572 -8.0142 -0.6246 25 6 -5.3178 -6.7900 -3.5328 26 6 -3.9238 -7.3996 -3.3724 27 6 0.1113 -2.4600 -0.9425 28 1 -0.4850 0.8401 0.0004 29 1 2.7383 -3.6714 0.8538 30 1 1.4863 -5.7431 0.4455 31 1 -2.0662 -2.9257 -2.2681 32 1 -3.6447 -4.6897 -3.6530 33 1 -4.4110 -4.1588 -2.1367 34 1 -5.1478 -4.6853 -0.3896 35 1 -5.6947 -5.3285 1.9234 36 1 -5.5723 -7.6912 2.6059 37 1 -4.9121 -9.4119 0.9728 38 1 -4.3655 -8.7687 -1.3403 39 1 -6.1713 -7.4012 -3.2392 40 1 -5.4834 -6.1290 -4.3835 41 1 -3.1720 -7.1398 -4.1176 42 1 -3.8597 -8.4120 -2.9731 43 1 -0.3068 -1.5525 -1.3526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528844321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:32 Heat of formation + Delta-G solvation = 54.183904 kcal Electronic energy + Delta-G solvation = -26162.933901 eV Core-core repulsion = 22559.790728 eV Total energy + Delta-G solvation = -3603.143173 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.20722 -39.09667 -37.77139 -36.73263 -34.24785 -33.64843 -31.11193 -30.53222 -30.39125 -29.70149 -27.90713 -25.97458 -23.36744 -22.83845 -22.02707 -21.88258 -21.60755 -19.88234 -19.06830 -17.63299 -17.21972 -16.69928 -15.71927 -15.32991 -15.15898 -14.99914 -14.77261 -14.30265 -14.17735 -13.98931 -13.75694 -13.36799 -13.28596 -12.83622 -12.65921 -12.55652 -12.50187 -12.14428 -11.70589 -11.54485 -11.39320 -11.19779 -11.02386 -10.92300 -10.88914 -10.50176 -10.27889 -10.13255 -10.06225 -9.68504 -9.36755 -9.24527 -8.75278 -8.38366 -7.95028 -7.68735 -6.98985 -6.74286 -4.62052 1.49900 1.56939 2.60812 2.81477 3.00603 3.03697 3.22719 3.48003 3.54058 3.83213 3.85733 4.16050 4.53622 4.69018 4.72253 4.77386 4.90749 5.10567 5.14935 5.21180 5.37135 5.51011 5.54877 5.55514 5.62878 5.70514 5.80972 5.84645 5.95925 6.06379 6.07582 6.17447 6.19824 6.61049 6.62739 6.65480 6.68780 6.77156 6.82388 6.97270 7.14187 7.15215 7.41324 7.49928 7.81287 7.98348 8.25174 8.45606 8.72600 8.76642 8.98115 9.72088 10.10475 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.003082 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.136771 B = 9082.638033 C = 9258.578600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.142 3.858 10 C -0.283 4.283 11 C 0.117 3.883 12 N -0.550 5.550 13 C 0.337 3.663 14 N -0.663 5.663 15 C 0.495 3.505 16 O -0.465 6.465 17 C -0.106 4.106 18 C -0.068 4.068 19 C -0.022 4.022 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.130 4.130 23 C -0.119 4.119 24 C -0.113 4.113 25 C -0.167 4.167 26 C -0.156 4.156 27 C -0.241 4.241 28 H 0.281 0.719 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.405 0.595 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 -7.178 -4.666 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.098 0.902 9 C 0.134 3.866 10 C -0.307 4.307 11 C -0.038 4.038 12 N -0.269 5.269 13 C 0.112 3.888 14 N -0.309 5.309 15 C 0.279 3.721 16 O -0.333 6.333 17 C -0.146 4.146 18 C -0.069 4.069 19 C -0.022 4.022 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.131 4.131 25 C -0.204 4.204 26 C -0.193 4.193 27 C -0.267 4.267 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.240 0.760 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.810 -8.609 -4.471 16.069 hybrid contribution 0.756 2.194 0.124 2.324 sum -12.054 -6.415 -4.347 14.330 Atomic orbital electron populations 1.69742 1.07543 1.29213 1.35686 1.25938 0.94868 1.01381 0.92018 0.86266 0.79991 0.79846 0.80026 1.18800 1.20268 1.18928 1.19547 0.95838 0.90073 1.43299 0.90162 1.17570 0.90397 0.92211 0.86420 1.21920 1.04073 0.94457 1.10282 1.21757 0.90557 0.96498 0.94968 1.67227 1.14420 1.27885 1.17347 1.18224 0.86356 0.90766 0.93407 1.43491 1.22128 1.12550 1.52758 1.20495 0.86393 0.83966 0.81223 1.90787 1.67973 1.31629 1.42948 1.21267 0.94794 0.96483 1.02034 1.19663 1.03395 0.94550 0.89256 1.18829 0.97175 0.93257 0.92980 1.20916 0.99827 0.98984 0.93412 1.21074 1.00135 0.96217 0.95990 1.21069 1.01136 0.93309 0.99250 1.21048 0.99845 0.99210 0.93559 1.20948 1.00013 0.95742 0.96356 1.23159 0.94284 1.03671 0.99255 1.23023 0.96767 0.97988 1.01529 1.21666 1.01156 0.95504 1.08333 0.90808 0.88070 0.86030 0.76012 0.88786 0.88826 0.86479 0.86320 0.86495 0.86417 0.86235 0.88597 0.88438 0.88518 0.88358 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.62 10.71 55.55 0.59 -19.03 16 2 C 0.08 1.84 5.31 -17.34 -0.09 1.74 16 3 Si 0.91 18.00 29.57 -169.99 -5.03 12.98 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.80 9.14 -37.65 -0.34 -12.14 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.14 3.77 5.60 -106.55 -0.60 3.18 16 10 C -0.28 -7.06 9.90 -38.70 -0.38 -7.44 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.66 16 12 N -0.55 -14.17 7.85 -12.52 -0.10 -14.27 16 13 C 0.34 8.22 7.41 -154.71 -1.15 7.07 16 14 N -0.66 -12.93 5.39 -11.49 -0.06 -12.99 16 15 C 0.50 9.16 7.55 -10.99 -0.08 9.08 16 16 O -0.46 -10.47 13.64 5.56 0.08 -10.40 16 17 C -0.11 -1.36 5.11 -27.88 -0.14 -1.51 16 18 C -0.07 -0.88 1.48 -155.67 -0.23 -1.11 16 19 C -0.02 -0.32 4.56 -104.63 -0.48 -0.80 16 20 C -0.11 -1.64 9.27 -39.58 -0.37 -2.01 16 21 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 22 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 23 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 24 C -0.11 -1.57 9.37 -39.59 -0.37 -1.94 16 25 C -0.17 -1.64 9.91 -26.74 -0.26 -1.90 16 26 C -0.16 -1.85 9.49 -26.74 -0.25 -2.10 16 27 C -0.24 -6.14 8.61 -38.48 -0.33 -6.47 16 28 H 0.28 6.29 8.29 -40.82 -0.34 5.96 16 29 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.12 2.63 8.06 -52.48 -0.42 2.20 16 31 H 0.41 6.45 8.70 -40.82 -0.36 6.10 16 32 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 33 H 0.09 1.05 6.82 -51.93 -0.35 0.69 16 34 H 0.12 1.56 6.61 -52.49 -0.35 1.21 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.48 5.93 -52.49 -0.31 1.17 16 39 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.10 1.13 6.09 -51.92 -0.32 0.82 16 43 H 0.13 3.32 6.11 -52.48 -0.32 3.00 16 LS Contribution 361.72 15.07 5.45 5.45 Total: -1.00 -32.17 361.72 -10.89 -43.06 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -5.35 Total: 14.90 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -6.47 Total: -19.71 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.43 Total: -46.29 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.17 -10.89 -43.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528844321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.247 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds