Wall clock time and date at job start Tue Mar 31 2020 13:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86799 * 119.99767 * 2 1 4 4 H 1.48496 * 109.47117 * 240.00042 * 3 2 1 5 5 H 1.48499 * 109.47400 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46643 * 120.00291 * 3 2 1 7 7 C 1.40032 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99334 * 190.01113 * 7 2 1 9 9 C 1.41542 * 120.00179 * 10.01696 * 7 2 1 10 10 C 1.41173 * 120.99234 * 205.97517 * 9 7 2 11 11 C 1.37590 * 119.01124 * 179.97438 * 10 9 7 12 12 N 1.32079 * 121.11009 * 359.97438 * 11 10 9 13 13 C 1.32465 * 122.23225 * 0.02562 * 12 11 10 14 14 N 1.39471 * 119.57764 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00341 * 5.57784 * 14 13 12 16 16 O 1.21273 * 119.99785 * 354.87151 * 15 14 13 17 17 C 1.50696 * 120.00107 * 174.86804 * 15 14 13 18 18 C 1.53004 * 109.47159 * 186.04674 * 17 15 14 19 19 C 1.50691 * 115.55006 * 65.04155 * 18 17 15 20 20 C 1.38240 * 120.00064 * 31.68674 * 19 18 17 21 21 C 1.38239 * 120.00137 * 180.02562 * 20 19 18 22 22 C 1.38236 * 119.99881 * 0.02562 * 21 20 19 23 23 C 1.38243 * 119.99864 * 359.97176 * 22 21 20 24 24 C 1.38228 * 119.99956 * 0.05133 * 23 22 21 25 25 C 1.52995 * 117.51331 * 210.74841 * 18 17 15 26 26 C 1.52991 * 60.00180 * 107.47638 * 25 18 17 27 27 C 1.38593 * 120.83951 * 0.25749 * 13 12 11 28 28 H 0.97000 * 119.99888 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.49712 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.44194 * 180.02562 * 11 10 9 31 31 H 0.97004 * 119.99976 * 185.58099 * 14 13 12 32 32 H 1.09000 * 109.47264 * 66.04271 * 17 15 14 33 33 H 1.09004 * 109.46961 * 306.04353 * 17 15 14 34 34 H 1.07992 * 120.00128 * 359.97438 * 20 19 18 35 35 H 1.07995 * 120.00086 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.00021 * 179.70038 * 22 21 20 37 37 H 1.07998 * 119.99798 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.99804 * 179.97438 * 24 23 22 39 39 H 1.09008 * 117.49569 * 214.96726 * 25 18 17 40 40 H 1.08996 * 117.50631 * 359.97438 * 25 18 17 41 41 H 1.09003 * 117.50054 * 252.50321 * 26 25 18 42 42 H 1.09011 * 117.52087 * 107.47500 * 26 25 18 43 43 H 1.08006 * 120.59970 * 179.72158 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0753 -1.2198 0.1621 9 6 1.3161 -2.4291 -0.2143 10 6 1.8160 -3.6483 0.2922 11 6 1.1103 -4.8065 0.0608 12 7 -0.0196 -4.7921 -0.6230 13 6 -0.5309 -3.6754 -1.1191 14 7 -1.7279 -3.7242 -1.8334 15 6 -2.4145 -4.8808 -1.9197 16 8 -1.9470 -5.8994 -1.4566 17 6 -3.7631 -4.9081 -2.5917 18 6 -4.3891 -6.2939 -2.4228 19 6 -4.7241 -6.6876 -1.0073 20 6 -5.0970 -5.7219 -0.0911 21 6 -5.4038 -6.0830 1.2075 22 6 -5.3373 -7.4097 1.5901 23 6 -4.9645 -8.3754 0.6738 24 6 -4.6572 -8.0142 -0.6246 25 6 -5.3178 -6.7900 -3.5328 26 6 -3.9238 -7.3996 -3.3724 27 6 0.1113 -2.4600 -0.9425 28 1 -0.4850 0.8401 0.0004 29 1 2.7383 -3.6714 0.8538 30 1 1.4863 -5.7431 0.4455 31 1 -2.0662 -2.9257 -2.2681 32 1 -3.6447 -4.6897 -3.6530 33 1 -4.4110 -4.1588 -2.1367 34 1 -5.1478 -4.6853 -0.3896 35 1 -5.6947 -5.3285 1.9234 36 1 -5.5723 -7.6912 2.6059 37 1 -4.9121 -9.4119 0.9728 38 1 -4.3655 -8.7687 -1.3403 39 1 -6.1713 -7.4012 -3.2392 40 1 -5.4834 -6.1290 -4.3835 41 1 -3.1720 -7.1398 -4.1176 42 1 -3.8597 -8.4120 -2.9731 43 1 -0.3068 -1.5525 -1.3526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528844321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:31 Heat of formation + Delta-G solvation = 38.038846 kcal Electronic energy + Delta-G solvation = -26163.634003 eV Core-core repulsion = 22559.790728 eV Total energy + Delta-G solvation = -3603.843275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46608 -40.53553 -39.33233 -37.80510 -36.05885 -35.37922 -32.48392 -32.10999 -31.37088 -31.11547 -29.41997 -27.89784 -24.49050 -23.82417 -23.76151 -23.29324 -22.77407 -21.45455 -20.19035 -19.41693 -18.45052 -18.01791 -17.38324 -16.96241 -16.35554 -16.13759 -16.04755 -15.90414 -15.68658 -15.39859 -15.02177 -14.66578 -14.51620 -14.40280 -14.32088 -14.12304 -13.63165 -13.22080 -13.12000 -12.86911 -12.83344 -12.67862 -12.41332 -12.08009 -11.94495 -11.93375 -11.86978 -11.46918 -11.41241 -11.14982 -10.99218 -10.80867 -9.90648 -9.78695 -9.58243 -9.35076 -8.82590 -8.58057 -6.57969 0.49367 0.53318 0.77920 1.01542 1.40984 1.52195 1.57114 1.98470 2.18028 2.20975 2.75703 2.84033 3.16032 3.61158 3.69706 3.75692 3.78274 3.85960 4.10899 4.17809 4.20325 4.25800 4.43866 4.56007 4.59592 4.65098 4.76751 4.80812 4.85889 4.88147 4.91700 4.96206 5.08752 5.11323 5.16808 5.21909 5.24506 5.28976 5.49164 5.62279 5.63933 5.68355 5.74588 5.93208 6.16244 6.17834 6.50978 6.66168 6.80503 6.84529 7.43250 7.87370 8.29486 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.003082 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.136771 B = 9082.638033 C = 9258.578600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.038 3.962 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.487 4.487 8 H 0.082 0.918 9 C 0.113 3.887 10 C -0.299 4.299 11 C 0.110 3.890 12 N -0.573 5.573 13 C 0.335 3.665 14 N -0.658 5.658 15 C 0.492 3.508 16 O -0.508 6.508 17 C -0.093 4.093 18 C -0.091 4.091 19 C -0.035 4.035 20 C -0.136 4.136 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.132 4.132 25 C -0.132 4.132 26 C -0.168 4.168 27 C -0.259 4.259 28 H 0.291 0.709 29 H 0.113 0.887 30 H 0.145 0.855 31 H 0.421 0.579 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 -6.303 -5.505 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.178 4.178 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.518 4.518 8 H 0.100 0.900 9 C 0.105 3.895 10 C -0.323 4.323 11 C -0.044 4.044 12 N -0.293 5.293 13 C 0.109 3.891 14 N -0.306 5.306 15 C 0.279 3.721 16 O -0.379 6.379 17 C -0.133 4.133 18 C -0.092 4.092 19 C -0.035 4.035 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.169 4.169 26 C -0.205 4.205 27 C -0.285 4.285 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.163 0.837 31 H 0.258 0.742 32 H 0.145 0.855 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.947 -7.735 -5.331 16.816 hybrid contribution 1.065 1.865 0.411 2.186 sum -12.882 -5.870 -4.920 14.987 Atomic orbital electron populations 1.69781 1.08874 1.30806 1.34872 1.26805 0.95698 1.04467 0.90873 0.85138 0.78663 0.75196 0.80028 1.18337 1.18910 1.18638 1.19850 0.96205 0.91044 1.44684 0.90000 1.18004 0.91281 0.93185 0.87015 1.22091 1.04833 0.94373 1.10965 1.22178 0.90321 0.97403 0.94491 1.67360 1.15091 1.28530 1.18317 1.18494 0.87518 0.90123 0.92943 1.43590 1.20776 1.14030 1.52197 1.21525 0.87715 0.82668 0.80233 1.90761 1.69336 1.33011 1.44764 1.21288 0.91162 0.97515 1.03307 1.19748 1.05581 0.94601 0.89244 1.19114 0.96914 0.93482 0.94002 1.21135 1.00815 0.99457 0.94012 1.21383 1.00191 0.97112 0.96244 1.21395 1.00933 0.93113 1.00406 1.21398 0.99147 1.00473 0.93368 1.21214 1.00573 0.96081 0.97124 1.23238 0.93180 1.02492 0.98004 1.23059 0.98432 0.97650 1.01360 1.21658 1.01635 0.95841 1.09336 0.89787 0.86846 0.83724 0.74192 0.85540 0.86778 0.85983 0.85057 0.84340 0.84265 0.85446 0.87816 0.85941 0.88766 0.88757 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.19 10.71 21.84 0.23 -39.95 16 2 C 0.04 1.81 5.31 85.29 0.45 2.27 16 3 Si 0.99 36.12 29.57 68.60 2.03 38.15 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.49 -25.54 9.14 23.52 0.21 -25.32 16 8 H 0.08 4.11 7.87 -2.91 -0.02 4.08 16 9 C 0.11 6.16 5.60 -21.12 -0.12 6.04 16 10 C -0.30 -15.22 9.90 22.84 0.23 -14.99 16 11 C 0.11 5.48 11.15 84.50 0.94 6.42 16 12 N -0.57 -30.07 7.85 -193.53 -1.52 -31.59 16 13 C 0.34 16.61 7.41 132.75 0.98 17.60 16 14 N -0.66 -25.55 5.39 -308.67 -1.66 -27.22 16 15 C 0.49 17.92 7.55 87.66 0.66 18.58 16 16 O -0.51 -23.06 13.64 -3.01 -0.04 -23.10 16 17 C -0.09 -2.21 5.11 29.85 0.15 -2.06 16 18 C -0.09 -2.19 1.48 -52.93 -0.08 -2.27 16 19 C -0.04 -0.99 4.56 -19.87 -0.09 -1.08 16 20 C -0.14 -3.90 9.27 22.27 0.21 -3.70 16 21 C -0.13 -3.57 10.05 22.27 0.22 -3.34 16 22 C -0.14 -3.55 10.05 22.27 0.22 -3.33 16 23 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 24 C -0.13 -3.62 9.37 22.27 0.21 -3.42 16 25 C -0.13 -2.21 9.91 30.59 0.30 -1.91 16 26 C -0.17 -3.73 9.49 30.59 0.29 -3.44 16 27 C -0.26 -13.50 8.61 22.98 0.20 -13.30 16 28 H 0.29 12.81 8.29 -92.71 -0.77 12.04 16 29 H 0.11 5.30 8.06 -2.91 -0.02 5.27 16 30 H 0.15 6.29 8.06 -2.91 -0.02 6.27 16 31 H 0.42 13.12 8.70 -92.71 -0.81 12.31 16 32 H 0.13 2.20 8.09 -2.39 -0.02 2.18 16 33 H 0.11 2.26 6.82 -2.39 -0.02 2.25 16 34 H 0.12 3.19 6.61 -2.91 -0.02 3.17 16 35 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.13 3.13 5.93 -2.91 -0.02 3.12 16 39 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.09 2.12 6.09 -2.38 -0.01 2.11 16 43 H 0.13 6.62 6.11 -2.91 -0.02 6.60 16 Total: -1.00 -71.01 361.72 4.51 -66.50 By element: Atomic # 1 Polarization: 47.20 SS G_CDS: 0.24 Total: 47.44 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 5.22 Total: -30.24 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -2.95 Total: -98.76 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -71.01 4.51 -66.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528844321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.542 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds