Wall clock time and date at job start Tue Mar 31 2020 13:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00320 * 2 1 4 4 H 1.48499 * 109.46957 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47048 * 119.99936 * 3 2 1 6 6 H 1.48499 * 109.47127 * 240.00038 * 3 2 1 7 7 C 1.37879 * 119.99342 * 180.27251 * 2 1 3 8 8 H 1.08005 * 119.99712 * 186.28969 * 7 2 1 9 9 C 1.50692 * 120.00392 * 6.29263 * 7 2 1 10 10 H 1.08997 * 109.47151 * 30.32737 * 9 7 2 11 11 C 1.53006 * 109.47063 * 150.32947 * 9 7 2 12 12 C 1.50696 * 109.47029 * 294.05294 * 11 9 7 13 13 O 1.21288 * 120.00005 * 0.02562 * 12 11 9 14 14 N 1.34773 * 119.99865 * 180.02562 * 12 11 9 15 15 C 1.46609 * 124.98450 * 179.72450 * 14 12 11 16 16 C 1.53819 * 105.21931 * 179.85937 * 15 14 12 17 17 C 1.50900 * 104.54030 * 0.37850 * 16 15 14 18 18 C 1.38302 * 132.11421 * 179.75451 * 17 16 15 19 19 C 1.38329 * 119.06498 * 180.02562 * 18 17 16 20 20 N 1.31888 * 120.58663 * 359.97438 * 19 18 17 21 21 C 1.31618 * 122.09139 * 0.04580 * 20 19 18 22 22 C 1.38795 * 108.66473 * 359.75960 * 17 16 15 23 23 C 1.50704 * 109.47137 * 270.32686 * 9 7 2 24 24 C 1.38237 * 119.99865 * 304.23916 * 23 9 7 25 25 C 1.38229 * 119.99577 * 179.78174 * 24 23 9 26 26 C 1.38240 * 120.00549 * 0.44913 * 25 24 23 27 27 C 1.38233 * 119.99286 * 359.80359 * 26 25 24 28 28 C 1.38230 * 119.99742 * 124.50993 * 23 9 7 29 29 H 0.96998 * 120.00424 * 174.80250 * 1 2 3 30 30 H 1.08995 * 109.47062 * 54.05635 * 11 9 7 31 31 H 1.09007 * 109.46504 * 174.05362 * 11 9 7 32 32 H 1.09007 * 110.29277 * 298.93505 * 15 14 12 33 33 H 1.09007 * 110.29475 * 61.05720 * 15 14 12 34 34 H 1.08998 * 110.62671 * 241.51608 * 16 15 14 35 35 H 1.08991 * 110.21737 * 119.04617 * 16 15 14 36 36 H 1.08008 * 120.46926 * 0.02637 * 18 17 16 37 37 H 1.08002 * 119.70404 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.59043 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00238 * 0.02562 * 24 23 9 40 40 H 1.08003 * 120.00294 * 180.27831 * 25 24 23 41 41 H 1.07992 * 120.00556 * 179.82989 * 26 25 24 42 42 H 1.08003 * 120.00018 * 179.97438 * 27 26 25 43 43 H 1.07994 * 120.00465 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0044 -1.1941 -0.0057 8 1 3.0796 -1.1975 0.0968 9 6 1.2577 -2.4945 -0.1549 10 1 0.3611 -2.3321 -0.7530 11 6 2.1550 -3.5211 -0.8493 12 6 2.4264 -3.0760 -2.2632 13 8 1.9496 -2.0396 -2.6749 14 7 3.1991 -3.8298 -3.0703 15 6 3.5286 -3.5053 -4.4615 16 6 4.4274 -4.6571 -4.9427 17 6 4.5329 -5.5782 -3.7521 18 6 5.1948 -6.7777 -3.5633 19 6 5.1068 -7.4077 -2.3349 20 7 4.4027 -6.8738 -1.3558 21 6 3.7591 -5.7346 -1.4979 22 6 3.7985 -5.0375 -2.7058 23 6 0.8669 -3.0085 1.2068 24 6 1.8339 -3.2059 2.1748 25 6 1.4748 -3.6731 3.4252 26 6 0.1500 -3.9517 3.7048 27 6 -0.8162 -3.7592 2.7352 28 6 -0.4578 -3.2879 1.4861 29 1 -0.4851 -0.8365 -0.0761 30 1 3.0971 -3.6055 -0.3077 31 1 1.6555 -4.4899 -0.8628 32 1 2.6209 -3.4545 -5.0630 33 1 4.0695 -2.5602 -4.5114 34 1 5.4123 -4.2841 -5.2234 35 1 3.9616 -5.1728 -5.7824 36 1 5.7724 -7.2165 -4.3636 37 1 5.6200 -8.3446 -2.1759 38 1 3.1941 -5.3342 -0.6691 39 1 2.8694 -2.9914 1.9553 40 1 2.2296 -3.8230 4.1829 41 1 -0.1302 -4.3193 4.6809 42 1 -1.8513 -3.9773 2.9534 43 1 -1.2127 -3.1374 0.7286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530289990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:46 Heat of formation + Delta-G solvation = 36.589021 kcal Electronic energy + Delta-G solvation = -26863.331403 eV Core-core repulsion = 23259.425259 eV Total energy + Delta-G solvation = -3603.906144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36910 -39.11951 -38.39430 -36.84396 -34.40101 -33.18168 -31.40933 -30.32678 -30.11986 -29.97675 -28.82738 -25.51245 -23.91766 -23.64966 -22.81253 -21.80476 -21.59379 -20.09634 -19.60457 -17.32368 -16.87148 -16.79169 -16.30039 -15.90812 -15.86476 -14.96851 -14.75518 -14.23260 -14.15688 -13.91091 -13.68692 -13.66802 -13.53034 -13.03036 -12.94528 -12.53406 -12.40406 -12.16216 -12.04129 -11.99420 -11.69760 -11.46436 -11.07894 -10.75552 -10.68999 -10.45018 -10.19647 -10.08690 -9.72959 -9.61050 -9.48426 -9.43272 -8.71237 -8.34332 -8.14956 -7.87110 -7.67491 -6.30118 -3.99049 1.04539 1.13640 2.17967 2.22244 2.88228 3.09524 3.46314 3.50929 3.66810 3.78299 4.18040 4.28182 4.53059 4.56369 4.63309 4.76287 4.79367 4.90592 5.11321 5.22944 5.44363 5.50963 5.55597 5.59159 5.60547 5.63973 5.69363 5.71959 5.82880 5.86111 5.89219 6.04517 6.09443 6.18552 6.28539 6.36352 6.58331 6.66136 6.75665 6.89474 7.11837 7.21414 7.33660 7.57218 7.66018 7.83222 7.96144 8.13508 8.42956 8.49931 8.90264 9.70600 11.10027 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.004968 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.600418 B = 5634.242596 C = 7470.571851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.034 3.966 3 Si 1.062 2.938 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.574 4.574 8 H 0.046 0.954 9 C 0.072 3.928 10 H 0.052 0.948 11 C -0.121 4.121 12 C 0.525 3.475 13 O -0.466 6.466 14 N -0.560 5.560 15 C 0.104 3.896 16 C -0.085 4.085 17 C -0.110 4.110 18 C -0.125 4.125 19 C 0.057 3.943 20 N -0.451 5.451 21 C 0.061 3.939 22 C 0.117 3.883 23 C -0.033 4.033 24 C -0.107 4.107 25 C -0.127 4.127 26 C -0.151 4.151 27 C -0.124 4.124 28 C -0.129 4.129 29 H 0.270 0.730 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.276 -13.689 -6.190 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.172 4.172 3 Si 0.891 3.109 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.611 4.611 8 H 0.064 0.936 9 C 0.053 3.947 10 H 0.070 0.930 11 C -0.161 4.161 12 C 0.315 3.685 13 O -0.334 6.334 14 N -0.286 5.286 15 C -0.018 4.018 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.145 4.145 19 C -0.101 4.101 20 N -0.159 5.159 21 C -0.100 4.100 22 C 0.016 3.984 23 C -0.034 4.034 24 C -0.126 4.126 25 C -0.145 4.145 26 C -0.169 4.169 27 C -0.142 4.142 28 C -0.147 4.147 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.188 0.812 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.612 -11.657 -5.530 14.980 hybrid contribution 0.354 -1.144 -0.855 1.471 sum 7.966 -12.801 -6.385 16.373 Atomic orbital electron populations 1.70765 1.06857 1.31170 1.44944 1.25598 0.96406 1.02231 0.92992 0.83643 0.75091 0.75857 0.76289 1.20832 1.21625 1.21547 1.21536 0.93847 0.90573 1.55182 0.93557 1.17895 0.95963 0.92773 0.88058 0.92968 1.22059 1.02558 1.00389 0.91084 1.21033 0.76751 0.83162 0.87589 1.90792 1.46709 1.21198 1.74730 1.46408 1.48613 1.20143 1.13402 1.22033 0.99545 0.98632 0.81577 1.21116 1.01066 0.94013 0.96028 1.20347 0.99416 0.96462 0.95846 1.21400 0.99868 0.94161 0.99118 1.22612 0.98275 1.00218 0.88950 1.67586 1.06157 1.09806 1.32368 1.23046 0.99931 0.91443 0.95578 1.19513 0.94838 0.88008 0.96030 1.20731 0.92403 0.91478 0.98768 1.20914 0.99652 0.99130 0.92859 1.21014 0.95827 1.00859 0.96849 1.20838 0.93528 1.03833 0.98692 1.20963 0.98394 1.00787 0.94039 1.21048 0.96352 1.00567 0.96733 0.91827 0.89302 0.90701 0.89948 0.89827 0.88799 0.88887 0.84731 0.82498 0.81218 0.86727 0.87353 0.87517 0.87423 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.63 55.43 0.76 -26.37 16 2 C 0.03 0.96 5.45 -17.82 -0.10 0.86 16 3 Si 1.06 25.95 29.91 -169.99 -5.08 20.87 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.57 -15.37 6.40 -34.44 -0.22 -15.59 16 8 H 0.05 1.25 7.82 -52.48 -0.41 0.84 16 9 C 0.07 1.70 1.31 -92.92 -0.12 1.58 16 10 H 0.05 1.38 6.24 -51.93 -0.32 1.05 16 11 C -0.12 -2.36 2.78 -27.88 -0.08 -2.44 16 12 C 0.52 10.59 7.56 -10.99 -0.08 10.51 16 13 O -0.47 -11.39 15.30 5.55 0.08 -11.31 16 14 N -0.56 -9.11 3.13 -112.81 -0.35 -9.47 16 15 C 0.10 1.34 7.07 -3.56 -0.03 1.32 16 16 C -0.09 -0.80 6.93 -27.36 -0.19 -0.99 16 17 C -0.11 -1.28 6.29 -104.29 -0.66 -1.94 16 18 C -0.13 -1.23 10.11 -39.52 -0.40 -1.63 16 19 C 0.06 0.62 11.20 -17.49 -0.20 0.43 16 20 N -0.45 -6.29 10.33 -12.94 -0.13 -6.43 16 21 C 0.06 0.90 10.09 -17.17 -0.17 0.73 16 22 C 0.12 1.69 6.60 -83.61 -0.55 1.14 16 23 C -0.03 -0.72 4.77 -104.62 -0.50 -1.22 16 24 C -0.11 -2.18 8.88 -39.58 -0.35 -2.53 16 25 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 26 C -0.15 -2.61 10.05 -39.58 -0.40 -3.01 16 27 C -0.12 -2.26 10.05 -39.58 -0.40 -2.65 16 28 C -0.13 -2.66 9.67 -39.58 -0.38 -3.05 16 29 H 0.27 8.03 6.68 -40.82 -0.27 7.75 16 30 H 0.09 1.64 6.67 -51.93 -0.35 1.30 16 31 H 0.07 1.30 6.94 -51.93 -0.36 0.93 16 32 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.17 2.54 4.33 -52.49 -0.23 2.31 16 39 H 0.11 2.27 7.80 -52.49 -0.41 1.86 16 40 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 41 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 43 H 0.11 2.24 7.95 -52.49 -0.42 1.82 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -33.44 356.15 -9.95 -43.39 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.37 Total: 5.11 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -5.22 Total: -21.16 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.27 Total: -42.27 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.44 -9.95 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530289990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.975 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds