Wall clock time and date at job start Tue Mar 31 2020 13:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00320 * 2 1 4 4 H 1.48499 * 109.46957 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47048 * 119.99936 * 3 2 1 6 6 H 1.48499 * 109.47127 * 240.00038 * 3 2 1 7 7 C 1.37879 * 119.99342 * 180.27251 * 2 1 3 8 8 H 1.08005 * 119.99712 * 186.28969 * 7 2 1 9 9 C 1.50692 * 120.00392 * 6.29263 * 7 2 1 10 10 H 1.08997 * 109.47151 * 30.32737 * 9 7 2 11 11 C 1.53006 * 109.47063 * 150.32947 * 9 7 2 12 12 C 1.50696 * 109.47029 * 294.05294 * 11 9 7 13 13 O 1.21288 * 120.00005 * 0.02562 * 12 11 9 14 14 N 1.34773 * 119.99865 * 180.02562 * 12 11 9 15 15 C 1.46609 * 124.98450 * 179.72450 * 14 12 11 16 16 C 1.53819 * 105.21931 * 179.85937 * 15 14 12 17 17 C 1.50900 * 104.54030 * 0.37850 * 16 15 14 18 18 C 1.38302 * 132.11421 * 179.75451 * 17 16 15 19 19 C 1.38329 * 119.06498 * 180.02562 * 18 17 16 20 20 N 1.31888 * 120.58663 * 359.97438 * 19 18 17 21 21 C 1.31618 * 122.09139 * 0.04580 * 20 19 18 22 22 C 1.38795 * 108.66473 * 359.75960 * 17 16 15 23 23 C 1.50704 * 109.47137 * 270.32686 * 9 7 2 24 24 C 1.38237 * 119.99865 * 304.23916 * 23 9 7 25 25 C 1.38229 * 119.99577 * 179.78174 * 24 23 9 26 26 C 1.38240 * 120.00549 * 0.44913 * 25 24 23 27 27 C 1.38233 * 119.99286 * 359.80359 * 26 25 24 28 28 C 1.38230 * 119.99742 * 124.50993 * 23 9 7 29 29 H 0.96998 * 120.00424 * 174.80250 * 1 2 3 30 30 H 1.08995 * 109.47062 * 54.05635 * 11 9 7 31 31 H 1.09007 * 109.46504 * 174.05362 * 11 9 7 32 32 H 1.09007 * 110.29277 * 298.93505 * 15 14 12 33 33 H 1.09007 * 110.29475 * 61.05720 * 15 14 12 34 34 H 1.08998 * 110.62671 * 241.51608 * 16 15 14 35 35 H 1.08991 * 110.21737 * 119.04617 * 16 15 14 36 36 H 1.08008 * 120.46926 * 0.02637 * 18 17 16 37 37 H 1.08002 * 119.70404 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.59043 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00238 * 0.02562 * 24 23 9 40 40 H 1.08003 * 120.00294 * 180.27831 * 25 24 23 41 41 H 1.07992 * 120.00556 * 179.82989 * 26 25 24 42 42 H 1.08003 * 120.00018 * 179.97438 * 27 26 25 43 43 H 1.07994 * 120.00465 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0044 -1.1941 -0.0057 8 1 3.0796 -1.1975 0.0968 9 6 1.2577 -2.4945 -0.1549 10 1 0.3611 -2.3321 -0.7530 11 6 2.1550 -3.5211 -0.8493 12 6 2.4264 -3.0760 -2.2632 13 8 1.9496 -2.0396 -2.6749 14 7 3.1991 -3.8298 -3.0703 15 6 3.5286 -3.5053 -4.4615 16 6 4.4274 -4.6571 -4.9427 17 6 4.5329 -5.5782 -3.7521 18 6 5.1948 -6.7777 -3.5633 19 6 5.1068 -7.4077 -2.3349 20 7 4.4027 -6.8738 -1.3558 21 6 3.7591 -5.7346 -1.4979 22 6 3.7985 -5.0375 -2.7058 23 6 0.8669 -3.0085 1.2068 24 6 1.8339 -3.2059 2.1748 25 6 1.4748 -3.6731 3.4252 26 6 0.1500 -3.9517 3.7048 27 6 -0.8162 -3.7592 2.7352 28 6 -0.4578 -3.2879 1.4861 29 1 -0.4851 -0.8365 -0.0761 30 1 3.0971 -3.6055 -0.3077 31 1 1.6555 -4.4899 -0.8628 32 1 2.6209 -3.4545 -5.0630 33 1 4.0695 -2.5602 -4.5114 34 1 5.4123 -4.2841 -5.2234 35 1 3.9616 -5.1728 -5.7824 36 1 5.7724 -7.2165 -4.3636 37 1 5.6200 -8.3446 -2.1759 38 1 3.1941 -5.3342 -0.6691 39 1 2.8694 -2.9914 1.9553 40 1 2.2296 -3.8230 4.1829 41 1 -0.1302 -4.3193 4.6809 42 1 -1.8513 -3.9773 2.9534 43 1 -1.2127 -3.1374 0.7286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530289990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:45 Heat of formation + Delta-G solvation = 17.462703 kcal Electronic energy + Delta-G solvation = -26864.160783 eV Core-core repulsion = 23259.425259 eV Total energy + Delta-G solvation = -3604.735523 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48476 -40.55110 -39.85506 -38.06687 -36.20509 -34.38299 -33.22821 -31.64328 -31.41727 -31.01321 -30.24912 -27.30102 -25.28510 -24.89202 -24.17286 -23.23719 -22.74776 -21.58235 -21.03966 -18.92564 -18.56497 -17.86612 -17.50908 -17.33149 -16.93021 -16.39489 -16.08833 -15.73201 -15.68984 -15.45516 -15.18037 -14.84247 -14.68622 -14.60267 -14.16452 -14.05037 -13.69649 -13.58331 -13.30524 -13.18519 -13.01807 -12.80893 -12.70827 -12.62072 -12.09960 -11.96977 -11.86930 -11.77937 -11.50850 -11.10040 -10.71412 -10.56896 -10.41873 -10.33078 -9.66853 -9.31721 -9.03135 -8.51117 -6.17957 0.03683 0.20041 0.65108 0.70115 1.45162 1.55261 1.59747 1.66101 1.71384 2.56641 2.81042 3.06780 3.20030 3.28620 3.35611 3.58201 3.69462 3.90492 4.01402 4.03384 4.07423 4.16889 4.25513 4.28456 4.35443 4.39726 4.48609 4.52145 4.63597 4.77492 4.78944 4.81332 4.87949 4.94942 4.99691 5.08611 5.15679 5.21018 5.35096 5.36811 5.71897 5.72001 5.78202 5.87888 6.16712 6.21191 6.26608 6.34599 6.70831 6.95902 7.03559 7.57810 8.89014 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.004968 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.600418 B = 5634.242596 C = 7470.571851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.021 4.021 3 Si 1.099 2.901 4 H -0.286 1.286 5 H -0.268 1.268 6 H -0.284 1.284 7 C -0.564 4.564 8 H 0.037 0.963 9 C 0.075 3.925 10 H 0.011 0.989 11 C -0.108 4.108 12 C 0.522 3.478 13 O -0.527 6.527 14 N -0.560 5.560 15 C 0.092 3.908 16 C -0.071 4.071 17 C -0.100 4.100 18 C -0.112 4.112 19 C 0.064 3.936 20 N -0.478 5.478 21 C 0.045 3.955 22 C 0.077 3.923 23 C -0.057 4.057 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.142 4.142 27 C -0.123 4.123 28 C -0.151 4.151 29 H 0.258 0.742 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.182 0.818 37 H 0.194 0.806 38 H 0.154 0.846 39 H 0.111 0.889 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.814 -16.567 -6.035 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.220 4.220 3 Si 0.923 3.077 4 H -0.211 1.211 5 H -0.193 1.193 6 H -0.210 1.210 7 C -0.602 4.602 8 H 0.056 0.944 9 C 0.056 3.944 10 H 0.029 0.971 11 C -0.148 4.148 12 C 0.313 3.687 13 O -0.401 6.401 14 N -0.285 5.285 15 C -0.029 4.029 16 C -0.107 4.107 17 C -0.110 4.110 18 C -0.131 4.131 19 C -0.094 4.094 20 N -0.186 5.186 21 C -0.114 4.114 22 C -0.021 4.021 23 C -0.057 4.057 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.160 4.160 27 C -0.141 4.141 28 C -0.170 4.170 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.199 0.801 37 H 0.211 0.789 38 H 0.171 0.829 39 H 0.129 0.871 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.154 0.846 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.198 -14.606 -5.371 18.606 hybrid contribution -0.327 -0.533 -0.927 1.118 sum 9.871 -15.139 -6.298 19.139 Atomic orbital electron populations 1.70854 1.07744 1.30456 1.48383 1.26769 0.96596 1.05550 0.93100 0.83168 0.74437 0.72827 0.77243 1.21130 1.19317 1.21048 1.21757 0.93426 0.92031 1.52988 0.94421 1.17711 0.94569 0.92937 0.89175 0.97083 1.21879 1.02082 0.99796 0.91035 1.21014 0.76819 0.82773 0.88094 1.90754 1.49587 1.23808 1.75909 1.46190 1.47663 1.20401 1.14256 1.22326 1.00436 1.00299 0.79872 1.21187 1.01792 0.92071 0.95698 1.20767 0.97899 0.96933 0.95449 1.21862 0.98716 0.92754 0.99812 1.23367 0.96484 1.00926 0.88629 1.67596 1.07299 1.09679 1.34065 1.22843 1.00754 0.92309 0.95536 1.19691 0.97034 0.87954 0.97421 1.20541 0.93538 0.93651 0.97985 1.20983 0.99098 1.00235 0.93861 1.21399 0.97255 0.99165 0.96272 1.21321 0.92780 1.01969 0.99936 1.21306 1.00371 0.99534 0.92918 1.21118 0.95697 1.02066 0.98095 0.93136 0.88592 0.89125 0.90061 0.90464 0.85995 0.85829 0.80090 0.78893 0.82864 0.87137 0.83966 0.83411 0.84559 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.79 13.63 21.45 0.29 -59.50 16 2 C -0.02 -1.26 5.45 84.66 0.46 -0.80 16 3 Si 1.10 54.23 29.91 68.60 2.05 56.28 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.56 -32.01 6.40 25.60 0.16 -31.84 16 8 H 0.04 2.13 7.82 -2.91 -0.02 2.11 16 9 C 0.08 3.82 1.31 -12.29 -0.02 3.81 16 10 H 0.01 0.64 6.24 -2.39 -0.01 0.63 16 11 C -0.11 -4.55 2.78 29.85 0.08 -4.46 16 12 C 0.52 22.67 7.56 87.66 0.66 23.33 16 13 O -0.53 -27.95 15.30 -3.05 -0.05 -28.00 16 14 N -0.56 -18.89 3.13 -629.21 -1.97 -20.85 16 15 C 0.09 2.36 7.07 86.63 0.61 2.97 16 16 C -0.07 -1.10 6.93 30.19 0.21 -0.89 16 17 C -0.10 -2.03 6.29 -19.65 -0.12 -2.15 16 18 C -0.11 -1.65 10.11 22.31 0.23 -1.43 16 19 C 0.06 1.15 11.20 84.71 0.95 2.10 16 20 N -0.48 -12.63 10.33 -194.85 -2.01 -14.64 16 21 C 0.04 1.33 10.09 85.03 0.86 2.19 16 22 C 0.08 2.22 6.60 38.33 0.25 2.48 16 23 C -0.06 -2.60 4.77 -19.87 -0.09 -2.69 16 24 C -0.12 -5.08 8.88 22.27 0.20 -4.88 16 25 C -0.12 -4.17 10.05 22.27 0.22 -3.95 16 26 C -0.14 -4.51 10.05 22.27 0.22 -4.29 16 27 C -0.12 -4.37 10.05 22.27 0.22 -4.15 16 28 C -0.15 -6.55 9.67 22.27 0.22 -6.33 16 29 H 0.26 16.60 6.68 -92.71 -0.62 15.98 16 30 H 0.10 3.82 6.67 -2.39 -0.02 3.80 16 31 H 0.09 3.42 6.94 -2.38 -0.02 3.41 16 32 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 37 H 0.19 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.15 4.85 4.33 -2.91 -0.01 4.84 16 39 H 0.11 4.50 7.80 -2.91 -0.02 4.48 16 40 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 41 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 42 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 43 H 0.10 4.29 7.95 -2.91 -0.02 4.27 16 Total: -1.00 -79.95 356.15 4.82 -75.12 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 1.18 Total: 22.60 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 5.33 Total: -31.01 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -3.69 Total: -95.00 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 54.23 SS G_CDS: 2.05 Total: 56.28 kcal Total: -79.95 4.82 -75.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530289990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.586 kcal (2) G-P(sol) polarization free energy of solvation -79.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds