Wall clock time and date at job start Tue Mar 31 2020 13:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00067 * 2 1 4 4 H 1.48504 * 109.47015 * 239.99628 * 3 2 1 5 5 H 1.48502 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47350 * 119.99822 * 3 2 1 7 7 C 1.37881 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99994 * 184.96490 * 7 2 1 9 9 C 1.50701 * 120.00071 * 4.97281 * 7 2 1 10 10 H 1.09004 * 109.47068 * 329.55079 * 9 7 2 11 11 C 1.52995 * 109.47223 * 209.54859 * 9 7 2 12 12 C 1.50702 * 109.47118 * 64.99849 * 11 9 7 13 13 O 1.21281 * 119.99828 * 0.02562 * 12 11 9 14 14 N 1.34775 * 119.99836 * 179.72713 * 12 11 9 15 15 C 1.46613 * 124.98017 * 180.27730 * 14 12 11 16 16 C 1.53823 * 105.21361 * 179.97438 * 15 14 12 17 17 C 1.50902 * 104.54580 * 0.02562 * 16 15 14 18 18 C 1.38307 * 132.11946 * 180.02562 * 17 16 15 19 19 C 1.38329 * 119.05614 * 179.18497 * 18 17 16 20 20 N 1.31891 * 120.59232 * 0.74374 * 19 18 17 21 21 C 1.31613 * 122.09223 * 359.52477 * 20 19 18 22 22 C 1.38802 * 108.66100 * 359.73390 * 17 16 15 23 23 C 1.50705 * 109.46937 * 89.54762 * 9 7 2 24 24 C 1.38235 * 119.99922 * 56.74814 * 23 9 7 25 25 C 1.38235 * 120.00047 * 179.80591 * 24 23 9 26 26 C 1.38243 * 119.99510 * 0.39960 * 25 24 23 27 27 C 1.38227 * 120.00278 * 359.85353 * 26 25 24 28 28 C 1.38232 * 120.00009 * 237.01575 * 23 9 7 29 29 H 0.96998 * 119.99650 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47119 * 305.00110 * 11 9 7 31 31 H 1.08995 * 109.47227 * 185.00421 * 11 9 7 32 32 H 1.09000 * 110.29604 * 298.93130 * 15 14 12 33 33 H 1.08999 * 110.29378 * 60.96408 * 15 14 12 34 34 H 1.09003 * 110.41769 * 118.76491 * 16 15 14 35 35 H 1.08995 * 110.42260 * 241.23304 * 16 15 14 36 36 H 1.07998 * 120.46927 * 359.97355 * 18 17 16 37 37 H 1.08001 * 119.70628 * 180.26802 * 19 18 17 38 38 H 1.08000 * 119.59529 * 180.02562 * 21 20 19 39 39 H 1.07995 * 120.00011 * 359.97438 * 24 23 9 40 40 H 1.07995 * 120.00422 * 180.23154 * 25 24 23 41 41 H 1.08003 * 119.99456 * 179.83489 * 26 25 24 42 42 H 1.08005 * 120.00320 * 179.97438 * 27 26 25 43 43 H 1.08006 * 120.00195 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1959 0.0815 9 6 1.2552 -2.4968 -0.1120 10 1 0.2697 -2.3894 0.3411 11 6 2.0329 -3.5968 0.6133 12 6 2.0798 -3.2899 2.0880 13 8 1.5436 -2.2901 2.5167 14 7 2.7125 -4.1297 2.9312 15 6 2.8198 -3.9418 4.3812 16 6 3.6232 -5.1522 4.8867 17 6 3.9184 -5.9567 3.6446 18 6 4.6010 -7.1435 3.4485 19 6 4.6973 -7.6596 2.1687 20 7 4.1595 -7.0234 1.1462 21 6 3.5075 -5.8895 1.2927 22 6 3.3573 -5.3094 2.5525 23 6 1.1024 -2.8644 -1.5655 24 6 2.2209 -2.9890 -2.3682 25 6 2.0811 -3.3301 -3.7005 26 6 0.8221 -3.5386 -4.2320 27 6 -0.2967 -3.4090 -3.4306 28 6 -0.1565 -3.0717 -2.0974 29 1 -0.4849 0.8401 -0.0004 30 1 3.0482 -3.6439 0.2195 31 1 1.5378 -4.5551 0.4571 32 1 3.3499 -3.0159 4.6043 33 1 1.8288 -3.9281 4.8350 34 1 4.5506 -4.8239 5.3561 35 1 3.0280 -5.7381 5.5872 36 1 5.0415 -7.6664 4.2845 37 1 5.2242 -8.5879 2.0043 38 1 3.0827 -5.4029 0.4272 39 1 3.2042 -2.8224 -1.9538 40 1 2.9551 -3.4311 -4.3267 41 1 0.7127 -3.8025 -5.2736 42 1 -1.2803 -3.5715 -3.8460 43 1 -1.0307 -2.9705 -1.4712 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530289991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:49 Heat of formation + Delta-G solvation = 39.836182 kcal Electronic energy + Delta-G solvation = -26804.416288 eV Core-core repulsion = 23200.650952 eV Total energy + Delta-G solvation = -3603.765336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.30029 -39.00633 -38.27247 -36.76029 -34.13258 -33.08751 -31.49524 -30.28371 -30.00843 -29.91163 -28.72459 -25.87233 -23.87487 -23.70552 -22.68413 -21.73652 -21.50976 -19.96570 -19.34305 -17.20317 -16.74017 -16.63498 -16.14158 -15.84847 -15.79069 -14.88829 -14.62070 -14.26802 -14.10665 -14.03175 -13.76173 -13.61296 -13.43212 -12.96120 -12.66034 -12.46533 -12.28327 -12.09784 -12.02237 -11.72924 -11.64164 -11.54335 -10.89273 -10.80643 -10.62515 -10.60041 -10.28246 -10.08648 -9.58988 -9.51714 -9.43272 -9.30456 -9.06680 -8.39256 -8.04633 -7.79982 -7.64576 -5.98118 -3.98620 1.10323 1.19140 2.28606 2.32766 2.96135 3.19632 3.35813 3.39325 3.41904 3.84123 4.23456 4.34305 4.47235 4.58689 4.72987 4.82888 4.85098 4.95563 5.16669 5.28631 5.40816 5.55656 5.61438 5.66973 5.70131 5.71266 5.74758 5.81962 5.91487 5.93442 6.00632 6.10509 6.21939 6.27016 6.40509 6.48231 6.70967 6.73005 6.88883 7.01591 7.31128 7.40632 7.48232 7.66380 7.82471 7.91952 8.01171 8.01665 8.31121 8.61143 9.00577 9.63092 11.11682 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.004898 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.653734 B = 5715.383932 C = 7494.928871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.078 3.922 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.498 4.498 8 H 0.051 0.949 9 C 0.079 3.921 10 H 0.074 0.926 11 C -0.126 4.126 12 C 0.522 3.478 13 O -0.460 6.460 14 N -0.561 5.561 15 C 0.104 3.896 16 C -0.085 4.085 17 C -0.111 4.111 18 C -0.125 4.125 19 C 0.056 3.944 20 N -0.451 5.451 21 C 0.061 3.939 22 C 0.118 3.882 23 C -0.025 4.025 24 C -0.114 4.114 25 C -0.130 4.130 26 C -0.153 4.153 27 C -0.128 4.128 28 C -0.118 4.118 29 H 0.260 0.740 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.580 -13.845 5.561 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.125 4.125 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.535 4.535 8 H 0.069 0.931 9 C 0.060 3.940 10 H 0.092 0.908 11 C -0.166 4.166 12 C 0.312 3.688 13 O -0.327 6.327 14 N -0.287 5.287 15 C -0.018 4.018 16 C -0.122 4.122 17 C -0.122 4.122 18 C -0.146 4.146 19 C -0.102 4.102 20 N -0.159 5.159 21 C -0.100 4.100 22 C 0.018 3.982 23 C -0.026 4.026 24 C -0.132 4.132 25 C -0.148 4.148 26 C -0.171 4.171 27 C -0.146 4.146 28 C -0.136 4.136 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.152 0.848 37 H 0.174 0.826 38 H 0.189 0.811 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.046 -13.269 4.947 15.397 hybrid contribution 0.469 1.446 0.817 1.726 sum 6.515 -11.823 5.765 14.679 Atomic orbital electron populations 1.69887 1.05892 1.26612 1.49185 1.24811 0.94683 0.98865 0.94168 0.86764 0.79797 0.83629 0.78444 1.20284 1.21309 1.20392 1.20647 0.92382 0.89631 1.50865 0.93116 1.17860 0.98659 0.91179 0.86278 0.90778 1.22141 1.02974 1.01376 0.90062 1.21090 0.77019 0.81881 0.88790 1.90813 1.40616 1.23770 1.77538 1.46469 1.52876 1.20980 1.08342 1.22016 1.01257 0.98661 0.79846 1.21112 1.01051 0.94711 0.95340 1.20347 1.00265 0.96404 0.95218 1.21388 0.99413 0.94821 0.98946 1.22595 0.99523 1.00059 0.88026 1.67584 1.07102 1.06972 1.34272 1.23066 0.98995 0.92746 0.95228 1.19518 0.94621 0.88244 0.95831 1.20671 0.91854 0.91094 0.98959 1.20951 0.98956 1.00024 0.93241 1.20983 0.96586 1.01609 0.95671 1.20812 0.93094 1.04437 0.98764 1.20982 0.97618 1.01498 0.94515 1.21082 0.97642 1.00040 0.94844 0.92975 0.89585 0.90677 0.89916 0.89986 0.88926 0.88918 0.84822 0.82581 0.81098 0.86849 0.87562 0.87744 0.87600 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 12.85 55.43 0.71 -24.76 16 2 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.50 -13.18 6.38 -34.44 -0.22 -13.40 16 8 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 9 C 0.08 1.86 1.68 -92.92 -0.16 1.71 16 10 H 0.07 1.99 6.95 -51.93 -0.36 1.63 16 11 C -0.13 -2.44 2.79 -27.88 -0.08 -2.52 16 12 C 0.52 10.54 7.55 -10.99 -0.08 10.46 16 13 O -0.46 -11.26 15.27 5.56 0.08 -11.18 16 14 N -0.56 -9.15 3.13 -112.81 -0.35 -9.50 16 15 C 0.10 1.35 7.07 -3.55 -0.03 1.33 16 16 C -0.08 -0.81 6.93 -27.36 -0.19 -1.00 16 17 C -0.11 -1.31 6.29 -104.29 -0.66 -1.97 16 18 C -0.13 -1.24 10.11 -39.52 -0.40 -1.64 16 19 C 0.06 0.61 11.20 -17.49 -0.20 0.41 16 20 N -0.45 -6.32 10.33 -12.94 -0.13 -6.45 16 21 C 0.06 0.90 10.09 -17.17 -0.17 0.72 16 22 C 0.12 1.73 6.60 -83.60 -0.55 1.17 16 23 C -0.03 -0.55 4.77 -104.62 -0.50 -1.05 16 24 C -0.11 -2.28 8.86 -39.58 -0.35 -2.63 16 25 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 26 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 27 C -0.13 -2.35 10.05 -39.59 -0.40 -2.74 16 28 C -0.12 -2.46 9.67 -39.58 -0.38 -2.85 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.09 1.57 6.59 -51.93 -0.34 1.22 16 31 H 0.08 1.30 6.93 -51.93 -0.36 0.94 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.17 2.54 4.32 -52.49 -0.23 2.31 16 39 H 0.11 2.20 7.75 -52.49 -0.41 1.79 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.10 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 43 H 0.11 2.40 7.95 -52.48 -0.42 1.98 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -32.39 357.50 -10.04 -42.42 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.46 Total: 4.88 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -5.25 Total: -17.69 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.23 Total: -40.71 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.39 -10.04 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530289991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.260 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds