Wall clock time and date at job start Tue Mar 31 2020 13:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48501 * 109.46911 * 240.00299 * 3 2 1 5 5 H 1.48496 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46987 * 120.00571 * 3 2 1 7 7 C 1.40031 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00052 * 202.36835 * 7 2 1 9 9 C 1.41542 * 120.00096 * 22.36815 * 7 2 1 10 10 C 1.41173 * 120.99756 * 17.80496 * 9 7 2 11 11 C 1.37594 * 119.01837 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10575 * 359.74533 * 11 10 9 13 13 C 1.32466 * 122.22890 * 0.53096 * 12 11 10 14 14 N 1.39471 * 119.57748 * 179.74441 * 13 12 11 15 15 C 1.34772 * 120.00418 * 200.12944 * 14 13 12 16 16 O 1.21275 * 119.99729 * 353.81877 * 15 14 13 17 17 C 1.50703 * 120.00190 * 173.81714 * 15 14 13 18 18 C 1.53004 * 115.54736 * 85.56091 * 17 15 14 19 19 C 1.50701 * 109.47455 * 39.88259 * 18 17 15 20 20 C 1.38235 * 119.99875 * 265.59592 * 19 18 17 21 21 C 1.38237 * 119.99971 * 179.78742 * 20 19 18 22 22 C 1.38236 * 119.99720 * 0.43686 * 21 20 19 23 23 C 1.38230 * 119.99963 * 359.81166 * 22 21 20 24 24 C 1.38233 * 120.00522 * 359.97438 * 23 22 21 25 25 C 1.52993 * 117.50080 * 299.89160 * 17 15 14 26 26 C 1.53003 * 60.03379 * 252.47280 * 25 17 15 27 27 C 1.38599 * 120.84750 * 359.46869 * 13 12 11 28 28 H 0.96998 * 119.99565 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.49233 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.44692 * 180.02562 * 11 10 9 31 31 H 0.97008 * 119.99976 * 20.13988 * 14 13 12 32 32 H 1.09003 * 109.47245 * 159.88046 * 18 17 15 33 33 H 1.08998 * 109.47030 * 279.87862 * 18 17 15 34 34 H 1.07997 * 119.99989 * 359.97438 * 20 19 18 35 35 H 1.07999 * 120.00161 * 180.26640 * 21 20 19 36 36 H 1.08001 * 119.99937 * 179.83458 * 22 21 20 37 37 H 1.08005 * 119.99781 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.00319 * 179.97438 * 24 23 22 39 39 H 1.09005 * 117.50099 * 359.97199 * 25 17 15 40 40 H 1.08996 * 117.49989 * 144.97434 * 25 17 15 41 41 H 1.09002 * 117.50084 * 107.49626 * 26 25 17 42 42 H 1.08997 * 117.49769 * 252.52197 * 26 25 17 43 43 H 1.07995 * 120.60778 * 180.23462 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2126 5 1 1.2765 2.7464 -0.0006 6 1 3.0953 1.6963 1.2124 7 6 2.0076 -1.2127 -0.0005 8 1 3.0266 -1.2481 0.3554 9 6 1.3797 -2.3922 -0.4675 10 6 0.2189 -2.3296 -1.2686 11 6 -0.3585 -3.5017 -1.6998 12 7 0.1582 -4.6747 -1.3806 13 6 1.2423 -4.7878 -0.6278 14 7 1.7377 -6.0548 -0.3202 15 6 2.5576 -6.2195 0.7366 16 8 2.9545 -5.2532 1.3525 17 6 2.9811 -7.6046 1.1531 18 6 4.2005 -8.1695 0.4218 19 6 5.2233 -7.0789 0.2334 20 6 5.2516 -6.3536 -0.9431 21 6 6.1869 -5.3502 -1.1142 22 6 7.0997 -5.0781 -0.1123 23 6 7.0747 -5.8068 1.0620 24 6 6.1366 -6.8073 1.2349 25 6 1.8811 -8.5883 1.5568 26 6 2.7988 -7.9881 2.6238 27 6 1.8939 -3.6632 -0.1466 28 1 -0.4849 0.8401 0.0004 29 1 -0.2096 -1.3758 -1.5389 30 1 -1.2464 -3.4619 -2.3132 31 1 1.4922 -6.8175 -0.8671 32 1 4.6352 -8.9774 1.0104 33 1 3.8949 -8.5531 -0.5516 34 1 4.5410 -6.5689 -1.7274 35 1 6.2063 -4.7807 -2.0316 36 1 7.8322 -4.2960 -0.2470 37 1 7.7882 -5.5945 1.8446 38 1 6.1173 -7.3769 2.1523 39 1 0.8510 -8.2336 1.5216 40 1 2.0259 -9.6379 1.3011 41 1 2.3726 -7.2384 3.2905 42 1 3.5476 -8.6427 3.0697 43 1 2.7796 -3.7599 0.4637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:27 Heat of formation + Delta-G solvation = 50.347027 kcal Electronic energy + Delta-G solvation = -26712.994706 eV Core-core repulsion = 23109.685154 eV Total energy + Delta-G solvation = -3603.309552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.39157 -38.94319 -37.99683 -36.55075 -34.51171 -33.43836 -32.32600 -30.70386 -30.61236 -28.60069 -27.15909 -25.90981 -23.88167 -22.63772 -22.28825 -21.78914 -21.38558 -20.84104 -19.03188 -17.81895 -17.02925 -16.27904 -15.86652 -15.51395 -15.32318 -15.03240 -14.91174 -14.40904 -14.31238 -13.94101 -13.45024 -13.27725 -13.14039 -12.96547 -12.68265 -12.48183 -12.40952 -12.19475 -12.03935 -11.61000 -11.40920 -11.22696 -11.17650 -11.04070 -10.88579 -10.51600 -10.39582 -10.14105 -10.01614 -9.72419 -9.22444 -8.77546 -8.70745 -8.51640 -7.98913 -7.96392 -6.99950 -6.84034 -4.51033 1.51622 1.61141 2.59433 2.82107 3.03646 3.06705 3.16869 3.34527 3.45218 3.67204 3.88600 3.94660 4.55013 4.64315 4.70274 4.83818 4.89589 5.02405 5.17272 5.23427 5.30022 5.46530 5.52338 5.58128 5.66664 5.74930 5.80558 5.82487 5.87119 5.99369 6.04728 6.18536 6.21312 6.63043 6.63444 6.70333 6.75017 6.80724 6.95881 7.10158 7.18954 7.24683 7.51037 7.55557 7.95265 8.04637 8.19157 8.57415 8.72245 8.85353 8.88850 9.62081 10.06383 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.004373 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.265931 B = 6401.746028 C = 7743.760242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.080 3.920 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.446 4.446 8 H 0.082 0.918 9 C 0.133 3.867 10 C -0.236 4.236 11 C 0.105 3.895 12 N -0.606 5.606 13 C 0.333 3.667 14 N -0.646 5.646 15 C 0.548 3.452 16 O -0.497 6.497 17 C -0.147 4.147 18 C -0.033 4.033 19 C -0.084 4.084 20 C -0.107 4.107 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.104 4.104 25 C -0.166 4.166 26 C -0.143 4.143 27 C -0.278 4.278 28 H 0.283 0.717 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.400 0.600 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.653 -13.605 0.778 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.100 0.900 9 C 0.124 3.876 10 C -0.260 4.260 11 C -0.047 4.047 12 N -0.327 5.327 13 C 0.109 3.891 14 N -0.290 5.290 15 C 0.333 3.667 16 O -0.370 6.370 17 C -0.151 4.151 18 C -0.071 4.071 19 C -0.084 4.084 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.138 4.138 24 C -0.123 4.123 25 C -0.203 4.203 26 C -0.180 4.180 27 C -0.303 4.303 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.234 0.766 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.319 -13.552 0.966 15.932 hybrid contribution 0.341 1.332 0.018 1.375 sum 8.661 -12.221 0.983 15.011 Atomic orbital electron populations 1.69812 1.07877 1.29686 1.32766 1.26007 0.94648 1.01643 0.91760 0.86341 0.80291 0.79776 0.80258 1.18606 1.20183 1.18757 1.19589 1.00145 0.91481 1.36393 0.90026 1.17792 0.90305 0.91969 0.87505 1.22203 1.01248 0.98408 1.04115 1.21609 0.97610 0.87538 0.97905 1.66582 1.13877 1.29359 1.22921 1.17935 0.91740 0.83333 0.96069 1.43102 1.47058 1.09445 1.29410 1.19274 0.78456 0.89184 0.79755 1.90626 1.53032 1.39736 1.53621 1.21431 0.99187 0.94122 1.00348 1.20064 0.90980 0.95454 1.00578 1.19652 0.96477 0.97808 0.94488 1.20994 0.98279 0.96038 0.97183 1.21101 0.95384 0.97245 0.99315 1.21103 0.99246 0.99405 0.94053 1.21056 0.99058 0.96282 0.97403 1.20881 0.95205 0.98179 0.97985 1.23154 0.95913 0.98260 1.02950 1.23042 1.02184 1.02617 0.90202 1.22475 1.06482 0.90818 1.10544 0.90548 0.85462 0.86055 0.76591 0.89949 0.90209 0.86546 0.86243 0.86409 0.86432 0.86511 0.88086 0.87805 0.88067 0.87889 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.03 10.88 55.55 0.60 -19.42 16 2 C 0.08 2.03 5.14 -17.34 -0.09 1.94 16 3 Si 0.91 18.75 29.61 -169.99 -5.03 13.71 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.45 -12.24 9.10 -37.65 -0.34 -12.59 16 8 H 0.08 2.21 7.94 -52.48 -0.42 1.79 16 9 C 0.13 3.71 5.65 -106.55 -0.60 3.11 16 10 C -0.24 -6.29 8.85 -38.70 -0.34 -6.63 16 11 C 0.10 2.57 11.15 -17.68 -0.20 2.37 16 12 N -0.61 -14.78 10.36 -12.52 -0.13 -14.91 16 13 C 0.33 8.04 7.52 -154.70 -1.16 6.88 16 14 N -0.65 -12.34 5.42 -11.49 -0.06 -12.40 16 15 C 0.55 10.03 5.40 -10.99 -0.06 9.97 16 16 O -0.50 -11.30 13.63 5.56 0.08 -11.23 16 17 C -0.15 -1.90 2.16 -155.62 -0.34 -2.24 16 18 C -0.03 -0.36 5.48 -27.88 -0.15 -0.52 16 19 C -0.08 -1.14 4.27 -104.62 -0.45 -1.59 16 20 C -0.11 -1.57 9.16 -39.58 -0.36 -1.93 16 21 C -0.11 -1.65 10.05 -39.58 -0.40 -2.05 16 22 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 23 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 24 C -0.10 -1.38 9.72 -39.58 -0.38 -1.77 16 25 C -0.17 -1.71 9.95 -26.73 -0.27 -1.98 16 26 C -0.14 -1.62 9.86 -26.69 -0.26 -1.89 16 27 C -0.28 -7.45 8.71 -38.48 -0.34 -7.79 16 28 H 0.28 6.58 8.29 -40.82 -0.34 6.25 16 29 H 0.13 3.41 5.98 -52.48 -0.31 3.10 16 30 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 31 H 0.40 6.41 8.83 -40.82 -0.36 6.05 16 32 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 33 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 34 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.14 3.99 5.07 -53.34 -0.27 3.72 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -32.11 366.43 -11.11 -43.22 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -5.55 Total: 16.23 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -6.54 Total: -20.72 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.41 Total: -46.74 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.11 -11.11 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.564 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds