Wall clock time and date at job start Tue Mar 31 2020 13:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 120.00058 * 2 1 4 4 H 1.48501 * 109.46911 * 240.00299 * 3 2 1 5 5 H 1.48496 * 109.47123 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46987 * 120.00571 * 3 2 1 7 7 C 1.40031 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00052 * 202.36835 * 7 2 1 9 9 C 1.41542 * 120.00096 * 22.36815 * 7 2 1 10 10 C 1.41173 * 120.99756 * 17.80496 * 9 7 2 11 11 C 1.37594 * 119.01837 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10575 * 359.74533 * 11 10 9 13 13 C 1.32466 * 122.22890 * 0.53096 * 12 11 10 14 14 N 1.39471 * 119.57748 * 179.74441 * 13 12 11 15 15 C 1.34772 * 120.00418 * 200.12944 * 14 13 12 16 16 O 1.21275 * 119.99729 * 353.81877 * 15 14 13 17 17 C 1.50703 * 120.00190 * 173.81714 * 15 14 13 18 18 C 1.53004 * 115.54736 * 85.56091 * 17 15 14 19 19 C 1.50701 * 109.47455 * 39.88259 * 18 17 15 20 20 C 1.38235 * 119.99875 * 265.59592 * 19 18 17 21 21 C 1.38237 * 119.99971 * 179.78742 * 20 19 18 22 22 C 1.38236 * 119.99720 * 0.43686 * 21 20 19 23 23 C 1.38230 * 119.99963 * 359.81166 * 22 21 20 24 24 C 1.38233 * 120.00522 * 359.97438 * 23 22 21 25 25 C 1.52993 * 117.50080 * 299.89160 * 17 15 14 26 26 C 1.53003 * 60.03379 * 252.47280 * 25 17 15 27 27 C 1.38599 * 120.84750 * 359.46869 * 13 12 11 28 28 H 0.96998 * 119.99565 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.49233 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.44692 * 180.02562 * 11 10 9 31 31 H 0.97008 * 119.99976 * 20.13988 * 14 13 12 32 32 H 1.09003 * 109.47245 * 159.88046 * 18 17 15 33 33 H 1.08998 * 109.47030 * 279.87862 * 18 17 15 34 34 H 1.07997 * 119.99989 * 359.97438 * 20 19 18 35 35 H 1.07999 * 120.00161 * 180.26640 * 21 20 19 36 36 H 1.08001 * 119.99937 * 179.83458 * 22 21 20 37 37 H 1.08005 * 119.99781 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.00319 * 179.97438 * 24 23 22 39 39 H 1.09005 * 117.50099 * 359.97199 * 25 17 15 40 40 H 1.08996 * 117.49989 * 144.97434 * 25 17 15 41 41 H 1.09002 * 117.50084 * 107.49626 * 26 25 17 42 42 H 1.08997 * 117.49769 * 252.52197 * 26 25 17 43 43 H 1.07995 * 120.60778 * 180.23462 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2126 5 1 1.2765 2.7464 -0.0006 6 1 3.0953 1.6963 1.2124 7 6 2.0076 -1.2127 -0.0005 8 1 3.0266 -1.2481 0.3554 9 6 1.3797 -2.3922 -0.4675 10 6 0.2189 -2.3296 -1.2686 11 6 -0.3585 -3.5017 -1.6998 12 7 0.1582 -4.6747 -1.3806 13 6 1.2423 -4.7878 -0.6278 14 7 1.7377 -6.0548 -0.3202 15 6 2.5576 -6.2195 0.7366 16 8 2.9545 -5.2532 1.3525 17 6 2.9811 -7.6046 1.1531 18 6 4.2005 -8.1695 0.4218 19 6 5.2233 -7.0789 0.2334 20 6 5.2516 -6.3536 -0.9431 21 6 6.1869 -5.3502 -1.1142 22 6 7.0997 -5.0781 -0.1123 23 6 7.0747 -5.8068 1.0620 24 6 6.1366 -6.8073 1.2349 25 6 1.8811 -8.5883 1.5568 26 6 2.7988 -7.9881 2.6238 27 6 1.8939 -3.6632 -0.1466 28 1 -0.4849 0.8401 0.0004 29 1 -0.2096 -1.3758 -1.5389 30 1 -1.2464 -3.4619 -2.3132 31 1 1.4922 -6.8175 -0.8671 32 1 4.6352 -8.9774 1.0104 33 1 3.8949 -8.5531 -0.5516 34 1 4.5410 -6.5689 -1.7274 35 1 6.2063 -4.7807 -2.0316 36 1 7.8322 -4.2960 -0.2470 37 1 7.7882 -5.5945 1.8446 38 1 6.1173 -7.3769 2.1523 39 1 0.8510 -8.2336 1.5216 40 1 2.0259 -9.6379 1.3011 41 1 2.3726 -7.2384 3.2905 42 1 3.5476 -8.6427 3.0697 43 1 2.7796 -3.7599 0.4637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:26 Heat of formation + Delta-G solvation = 33.007058 kcal Electronic energy + Delta-G solvation = -26713.746624 eV Core-core repulsion = 23109.685154 eV Total energy + Delta-G solvation = -3604.061470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.80058 -40.27455 -39.53720 -37.78808 -36.38994 -35.23787 -33.28701 -32.62678 -31.74292 -30.46303 -28.14510 -27.92372 -25.34283 -23.67127 -23.56203 -23.24335 -22.81739 -22.31274 -20.44077 -19.68578 -18.28576 -17.76202 -17.43826 -17.01264 -16.67649 -16.27418 -16.24341 -16.05030 -15.73686 -15.41139 -15.02089 -14.79205 -14.34701 -14.28399 -14.10303 -13.98756 -13.81722 -13.33698 -13.26052 -13.23787 -12.99269 -12.85947 -12.41320 -12.20731 -12.13906 -11.99238 -11.89611 -11.54459 -11.41082 -11.10640 -10.98775 -10.45722 -10.01332 -9.94286 -9.77509 -9.56211 -8.91476 -8.77703 -6.59100 0.47256 0.54067 0.77267 0.90576 1.33077 1.44661 1.49484 1.75739 1.98449 2.15023 2.67032 2.68988 2.90400 3.54425 3.66245 3.74040 3.86009 3.94882 4.03041 4.15136 4.15509 4.24192 4.31721 4.55870 4.65222 4.75091 4.78455 4.78997 4.85957 4.87256 4.95731 4.98380 5.01141 5.14425 5.18414 5.21252 5.21961 5.22892 5.52695 5.58484 5.59346 5.64482 5.71177 5.98596 6.15843 6.17170 6.37339 6.58561 6.77639 6.80963 7.27640 7.64807 8.15855 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.004373 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.265931 B = 6401.746028 C = 7743.760242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.043 3.957 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.256 1.256 6 H -0.261 1.261 7 C -0.483 4.483 8 H 0.069 0.931 9 C 0.105 3.895 10 C -0.259 4.259 11 C 0.107 3.893 12 N -0.604 5.604 13 C 0.341 3.659 14 N -0.638 5.638 15 C 0.546 3.454 16 O -0.546 6.546 17 C -0.159 4.159 18 C -0.027 4.027 19 C -0.092 4.092 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.136 4.136 23 C -0.130 4.130 24 C -0.114 4.114 25 C -0.140 4.140 26 C -0.143 4.143 27 C -0.309 4.309 28 H 0.296 0.704 29 H 0.121 0.879 30 H 0.157 0.843 31 H 0.417 0.583 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.088 0.912 40 H 0.145 0.855 41 H 0.074 0.926 42 H 0.138 0.862 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.787 -15.467 1.287 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.176 4.176 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.180 1.180 6 H -0.186 1.186 7 C -0.513 4.513 8 H 0.087 0.913 9 C 0.097 3.903 10 C -0.282 4.282 11 C -0.044 4.044 12 N -0.326 5.326 13 C 0.115 3.885 14 N -0.283 5.283 15 C 0.335 3.665 16 O -0.422 6.422 17 C -0.162 4.162 18 C -0.064 4.064 19 C -0.092 4.092 20 C -0.147 4.147 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.132 4.132 25 C -0.177 4.177 26 C -0.180 4.180 27 C -0.334 4.334 28 H 0.107 0.893 29 H 0.139 0.861 30 H 0.174 0.826 31 H 0.254 0.746 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.106 0.894 40 H 0.163 0.837 41 H 0.093 0.907 42 H 0.156 0.844 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.438 -15.470 1.465 17.682 hybrid contribution 0.262 1.869 -0.096 1.890 sum 8.699 -13.601 1.370 16.203 Atomic orbital electron populations 1.69817 1.09181 1.31474 1.31964 1.26872 0.95496 1.04678 0.90540 0.85211 0.79021 0.75080 0.80188 1.18256 1.17977 1.18561 1.19790 1.00092 0.93109 1.38340 0.91260 1.18189 0.91227 0.92766 0.88142 1.22193 1.01656 0.99015 1.05371 1.22126 0.98109 0.86975 0.97185 1.66800 1.13764 1.29044 1.22966 1.18154 0.90966 0.84873 0.94479 1.43125 1.46985 1.08076 1.30142 1.20373 0.76686 0.91165 0.78318 1.90601 1.54432 1.42253 1.54873 1.21335 1.01497 0.91342 1.02030 1.20185 0.89179 0.95123 1.01928 1.20017 0.97088 0.98238 0.93831 1.21166 0.98569 0.96790 0.98183 1.21322 0.96353 0.97961 0.99979 1.21374 0.99565 1.00141 0.94327 1.21438 0.99607 0.96105 0.97616 1.21286 0.94841 0.98280 0.98804 1.23307 0.94338 0.99489 1.00534 1.23199 1.03304 1.02458 0.89068 1.22463 1.07051 0.91773 1.12158 0.89266 0.86094 0.82609 0.74602 0.86263 0.88616 0.86817 0.86344 0.85035 0.84205 0.83994 0.89370 0.83667 0.90735 0.84354 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.88 10.88 21.84 0.24 -41.65 16 2 C 0.04 2.22 5.14 85.29 0.44 2.66 16 3 Si 0.99 38.79 29.61 68.60 2.03 40.82 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.48 -27.95 9.10 23.52 0.21 -27.73 16 8 H 0.07 4.01 7.94 -2.91 -0.02 3.99 16 9 C 0.10 6.17 5.65 -21.11 -0.12 6.05 16 10 C -0.26 -14.22 8.85 22.84 0.20 -14.02 16 11 C 0.11 5.29 11.15 84.50 0.94 6.23 16 12 N -0.60 -29.52 10.36 -193.53 -2.01 -31.53 16 13 C 0.34 16.85 7.52 132.75 1.00 17.85 16 14 N -0.64 -24.43 5.42 -308.66 -1.67 -26.11 16 15 C 0.55 20.06 5.40 87.66 0.47 20.54 16 16 O -0.55 -25.84 13.63 -3.01 -0.04 -25.88 16 17 C -0.16 -3.73 2.16 -52.90 -0.11 -3.84 16 18 C -0.03 -0.50 5.48 29.85 0.16 -0.34 16 19 C -0.09 -2.38 4.27 -19.87 -0.08 -2.47 16 20 C -0.13 -3.88 9.16 22.27 0.20 -3.68 16 21 C -0.14 -4.27 10.05 22.27 0.22 -4.05 16 22 C -0.14 -3.85 10.05 22.27 0.22 -3.63 16 23 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 24 C -0.11 -2.86 9.72 22.27 0.22 -2.64 16 25 C -0.14 -2.36 9.95 30.59 0.30 -2.05 16 26 C -0.14 -2.83 9.86 30.62 0.30 -2.53 16 27 C -0.31 -17.47 8.71 22.99 0.20 -17.27 16 28 H 0.30 13.71 8.29 -92.71 -0.77 12.95 16 29 H 0.12 6.69 5.98 -2.91 -0.02 6.67 16 30 H 0.16 6.45 8.06 -2.91 -0.02 6.42 16 31 H 0.42 12.92 8.83 -92.70 -0.82 12.10 16 32 H 0.12 1.39 7.92 -2.39 -0.02 1.38 16 33 H 0.10 1.48 8.06 -2.39 -0.02 1.46 16 34 H 0.11 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.12 3.47 8.06 -2.91 -0.02 3.44 16 36 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.14 1.76 8.08 -2.39 -0.02 1.74 16 43 H 0.13 7.60 5.07 -16.32 -0.08 7.52 16 Total: -1.00 -74.72 366.43 3.71 -71.01 By element: Atomic # 1 Polarization: 47.23 SS G_CDS: 0.15 Total: 47.38 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 5.01 Total: -34.05 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -3.44 Total: -99.28 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.04 Total: -25.88 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -74.72 3.71 -71.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.014 kcal (2) G-P(sol) polarization free energy of solvation -74.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds