Wall clock time and date at job start Tue Mar 31 2020 13:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46853 * 239.99704 * 3 2 1 5 5 H 1.48497 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46905 * 119.99757 * 3 2 1 7 7 C 1.40033 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00198 * 170.18467 * 7 2 1 9 9 C 1.41540 * 120.00022 * 350.18062 * 7 2 1 10 10 C 1.41174 * 120.99519 * 151.67685 * 9 7 2 11 11 C 1.37589 * 119.01462 * 180.02562 * 10 9 7 12 12 N 1.32078 * 121.11364 * 359.74626 * 11 10 9 13 13 C 1.32474 * 122.22698 * 0.52595 * 12 11 10 14 14 N 1.39470 * 119.58116 * 179.74760 * 13 12 11 15 15 C 1.34783 * 119.99477 * 5.09840 * 14 13 12 16 16 O 1.21265 * 120.00389 * 354.97216 * 15 14 13 17 17 C 1.50706 * 119.99239 * 174.97654 * 15 14 13 18 18 C 1.50700 * 109.46654 * 179.97438 * 17 15 14 19 19 C 1.38256 * 120.03437 * 269.97823 * 18 17 15 20 20 C 1.38100 * 119.93514 * 180.02562 * 19 18 17 21 21 C 1.38500 * 120.21927 * 0.02562 * 20 19 18 22 22 C 1.38222 * 119.84488 * 359.67385 * 21 20 19 23 23 C 1.38100 * 120.03332 * 89.99647 * 18 17 15 24 24 C 1.51375 * 109.75600 * 179.81303 * 22 21 20 25 25 C 1.54348 * 105.23976 * 343.23723 * 24 22 21 26 26 C 1.51366 * 130.39266 * 179.97438 * 21 20 19 27 27 C 1.38601 * 120.84146 * 359.47479 * 13 12 11 28 28 H 0.97000 * 120.00482 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.49200 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.44127 * 179.97438 * 11 10 9 31 31 H 0.96999 * 120.00058 * 185.09366 * 14 13 12 32 32 H 1.08996 * 109.47255 * 60.00210 * 17 15 14 33 33 H 1.08999 * 109.47060 * 299.99160 * 17 15 14 34 34 H 1.08000 * 120.03250 * 0.04413 * 19 18 17 35 35 H 1.08005 * 119.89099 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.89117 * 359.97438 * 23 18 17 37 37 H 1.08997 * 110.46327 * 224.18163 * 24 22 21 38 38 H 1.09001 * 110.15040 * 102.12168 * 24 22 21 39 39 H 1.09005 * 110.81310 * 267.88423 * 25 24 22 40 40 H 1.08997 * 110.99250 * 144.41490 * 25 24 22 41 41 H 1.08996 * 110.30359 * 316.10204 * 26 21 20 42 42 H 1.09003 * 110.30482 * 78.25457 * 26 21 20 43 43 H 1.07993 * 120.60509 * 180.27607 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0757 -1.2197 -0.1589 9 6 1.3154 -2.4294 0.2101 10 6 1.7908 -3.6402 -0.3385 11 6 1.0854 -4.7991 -0.1096 12 7 -0.0188 -4.7941 0.6151 13 6 -0.5094 -3.6846 1.1474 14 7 -1.6829 -3.7421 1.8990 15 6 -2.2541 -4.9332 2.1664 16 8 -1.8006 -5.9465 1.6785 17 6 -3.4567 -5.0057 3.0719 18 6 -3.8987 -6.4401 3.2059 19 6 -4.8226 -6.9650 2.3214 20 6 -5.2267 -8.2797 2.4464 21 6 -4.7098 -9.0748 3.4558 22 6 -3.7815 -8.5519 4.3362 23 6 -3.3817 -7.2316 4.2126 24 6 -3.3772 -9.6092 5.3413 25 6 -4.4674 -10.6976 5.2458 26 6 -4.9850 -10.5224 3.8023 27 6 0.1316 -2.4684 0.9717 28 1 -0.4851 0.8400 -0.0004 29 1 2.6948 -3.6565 -0.9292 30 1 1.4427 -5.7292 -0.5264 31 1 -2.0878 -2.9249 2.2293 32 1 -4.2676 -4.4142 2.6470 33 1 -3.1959 -4.6122 4.0544 34 1 -5.2277 -6.3477 1.5333 35 1 -5.9488 -8.6889 1.7553 36 1 -2.6599 -6.8209 4.9031 37 1 -3.3495 -9.1886 6.3465 38 1 -2.4042 -10.0244 5.0787 39 1 -5.2631 -10.5133 5.9677 40 1 -4.0410 -11.6908 5.3867 41 1 -6.0550 -10.7253 3.7569 42 1 -4.4449 -11.1830 3.1241 43 1 -0.2694 -1.5670 1.4111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:29 Heat of formation + Delta-G solvation = 15.360942 kcal Electronic energy + Delta-G solvation = -25330.119236 eV Core-core repulsion = 21725.292574 eV Total energy + Delta-G solvation = -3604.826662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.28140 -39.40887 -37.82518 -35.93399 -34.27398 -33.68435 -32.03459 -30.70008 -30.44672 -28.73148 -27.76245 -26.24158 -25.95305 -22.70614 -22.01858 -21.73669 -20.89179 -20.26383 -19.43581 -17.65329 -16.86742 -16.17498 -15.92226 -15.75784 -15.25349 -15.19703 -14.78318 -14.36529 -14.20823 -14.00885 -13.53364 -13.22956 -13.08427 -12.96658 -12.81969 -12.61827 -12.49545 -12.39165 -11.81151 -11.67392 -11.39771 -11.35263 -11.22659 -11.20285 -10.95800 -10.91163 -10.71154 -10.29503 -10.16661 -9.70719 -9.38107 -9.36583 -8.67967 -8.34318 -7.96262 -7.71586 -7.03455 -6.75871 -4.62962 1.37302 1.48327 2.56331 2.80326 3.00589 3.03649 3.20015 3.48247 3.55490 3.85457 3.95622 4.29869 4.46524 4.68865 4.77397 4.81296 4.97134 5.04491 5.16384 5.23172 5.39423 5.50693 5.53303 5.55904 5.57184 5.63891 5.66476 5.69093 5.80026 5.97693 5.99734 6.12298 6.22717 6.45685 6.58350 6.64870 6.66110 6.68234 6.79606 6.95488 7.06983 7.11372 7.37933 7.46612 7.78557 7.95066 8.22198 8.42773 8.70195 8.75197 8.91771 9.68343 10.10717 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.002348 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.713744 B =11924.549103 C =12257.682319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.143 3.857 10 C -0.281 4.281 11 C 0.117 3.883 12 N -0.551 5.551 13 C 0.336 3.664 14 N -0.661 5.661 15 C 0.497 3.503 16 O -0.471 6.471 17 C -0.103 4.103 18 C -0.057 4.057 19 C -0.103 4.103 20 C -0.107 4.107 21 C -0.104 4.104 22 C -0.098 4.098 23 C -0.091 4.091 24 C -0.082 4.082 25 C -0.120 4.120 26 C -0.081 4.081 27 C -0.237 4.237 28 H 0.281 0.719 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.408 0.592 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -10.342 9.826 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.135 3.865 10 C -0.305 4.305 11 C -0.038 4.038 12 N -0.270 5.270 13 C 0.111 3.889 14 N -0.307 5.307 15 C 0.281 3.719 16 O -0.340 6.340 17 C -0.143 4.143 18 C -0.057 4.057 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.104 4.104 22 C -0.098 4.098 23 C -0.109 4.109 24 C -0.119 4.119 25 C -0.157 4.157 26 C -0.118 4.118 27 C -0.263 4.263 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.242 0.758 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.589 -11.775 9.652 19.135 hybrid contribution 0.652 2.236 -0.215 2.339 sum -10.938 -9.539 9.437 17.312 Atomic orbital electron populations 1.69736 1.07541 1.29298 1.35774 1.25931 0.94879 1.01366 0.92028 0.86263 0.79980 0.79839 0.80022 1.18929 1.20284 1.18800 1.19523 0.95797 0.90004 1.43579 0.90118 1.17586 0.90250 0.92254 0.86427 1.21945 1.04508 0.94618 1.09415 1.21773 0.90804 0.96507 0.94691 1.67233 1.15480 1.28182 1.16137 1.18224 0.86825 0.90889 0.92957 1.43480 1.25031 1.09135 1.53072 1.20512 0.84887 0.83967 0.82518 1.90800 1.61354 1.33665 1.48228 1.20712 0.97488 0.95037 1.01108 1.19138 0.96617 0.94555 0.95440 1.20856 0.97702 0.95325 0.98271 1.20508 1.00658 0.93561 0.97743 1.20520 0.97910 0.95736 0.96218 1.20463 0.97614 0.93995 0.97758 1.20409 0.99289 0.92668 0.98531 1.21028 0.99207 0.93846 0.97801 1.22282 0.98215 0.98781 0.96447 1.21023 1.01344 0.92735 0.96681 1.21604 1.01446 0.95457 1.07761 0.90776 0.87954 0.85923 0.75758 0.88197 0.88225 0.86042 0.86461 0.86497 0.90880 0.90280 0.91117 0.90700 0.90996 0.90372 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.64 10.83 55.55 0.60 -19.04 16 2 C 0.08 1.83 5.30 -17.34 -0.09 1.74 16 3 Si 0.91 17.98 29.57 -169.99 -5.03 12.95 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.78 9.13 -37.65 -0.34 -12.12 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 9 C 0.14 3.78 5.58 -106.55 -0.59 3.19 16 10 C -0.28 -6.96 9.90 -38.70 -0.38 -7.35 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.65 16 12 N -0.55 -14.26 7.85 -12.52 -0.10 -14.36 16 13 C 0.34 8.17 7.42 -154.70 -1.15 7.03 16 14 N -0.66 -12.84 5.39 -11.49 -0.06 -12.90 16 15 C 0.50 9.30 7.78 -10.98 -0.09 9.22 16 16 O -0.47 -10.99 14.29 5.57 0.08 -10.91 16 17 C -0.10 -1.35 5.83 -29.03 -0.17 -1.52 16 18 C -0.06 -0.81 4.37 -104.67 -0.46 -1.26 16 19 C -0.10 -1.40 9.70 -39.63 -0.38 -1.79 16 20 C -0.11 -1.34 10.04 -39.54 -0.40 -1.74 16 21 C -0.10 -1.28 6.14 -104.20 -0.64 -1.92 16 22 C -0.10 -1.26 6.14 -104.20 -0.64 -1.90 16 23 C -0.09 -1.26 9.70 -39.54 -0.38 -1.64 16 24 C -0.08 -0.81 6.77 -26.85 -0.18 -0.99 16 25 C -0.12 -0.96 7.08 -25.32 -0.18 -1.14 16 26 C -0.08 -0.75 6.77 -26.85 -0.18 -0.93 16 27 C -0.24 -6.02 8.59 -38.48 -0.33 -6.35 16 28 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 29 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 31 H 0.41 6.39 8.70 -40.82 -0.36 6.04 16 32 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.13 3.23 6.27 -52.49 -0.33 2.90 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -32.60 363.07 -11.54 -44.14 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -5.72 Total: 11.47 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -6.79 Total: -16.83 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.44 Total: -46.30 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.60 -11.54 -44.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.503 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds